Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47437 * 2 1 4 4 C 1.53005 * 109.47537 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46639 * 54.99447 * 4 3 2 6 6 C 1.53007 * 109.46875 * 294.99978 * 4 3 2 7 7 C 1.52996 * 109.47338 * 175.00224 * 4 3 2 8 8 C 1.50700 * 109.46981 * 184.99955 * 7 4 3 9 9 O 1.21283 * 120.00281 * 359.97438 * 8 7 4 10 10 N 1.34773 * 119.99929 * 179.97438 * 8 7 4 11 11 C 1.46931 * 120.63029 * 359.97438 * 10 8 7 12 12 C 1.53200 * 108.77279 * 126.41292 * 11 10 8 13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10 14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11 15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12 16 16 N 1.46501 * 109.49630 * 181.31171 * 14 13 12 17 17 C 1.36937 * 120.00201 * 85.00078 * 16 14 13 18 18 H 1.07998 * 119.99752 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99989 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99714 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00156 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46949 * 90.00092 * 21 19 17 23 23 H 1.48495 * 109.47004 * 209.99769 * 21 19 17 24 24 H 1.48493 * 109.46905 * 330.00118 * 21 19 17 25 25 C 1.46928 * 120.63179 * 180.02562 * 10 8 7 26 26 H 1.08999 * 109.47316 * 300.00456 * 1 2 3 27 27 H 1.09007 * 109.47157 * 60.00481 * 1 2 3 28 28 H 1.09005 * 109.47796 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47316 * 239.99544 * 2 1 3 30 30 H 1.09006 * 109.46906 * 120.00005 * 2 1 3 31 31 H 1.08999 * 109.47240 * 59.99497 * 3 2 1 32 32 H 1.09006 * 109.47076 * 299.99900 * 3 2 1 33 33 H 1.08998 * 109.46904 * 59.99886 * 6 4 3 34 34 H 1.08995 * 109.46992 * 179.97438 * 6 4 3 35 35 H 1.09001 * 109.47070 * 300.00119 * 6 4 3 36 36 H 1.09000 * 109.47400 * 64.99645 * 7 4 3 37 37 H 1.09001 * 109.46877 * 304.99611 * 7 4 3 38 38 H 1.08998 * 109.58425 * 6.63242 * 11 10 8 39 39 H 1.08995 * 109.70793 * 246.26860 * 11 10 8 40 40 H 1.08997 * 109.49280 * 294.68615 * 12 11 10 41 41 H 1.08996 * 109.52417 * 174.60413 * 12 11 10 42 42 H 1.09002 * 109.46050 * 58.65698 * 13 12 11 43 43 H 1.09004 * 109.46034 * 178.62914 * 13 12 11 44 44 H 0.96996 * 119.99546 * 264.99835 * 16 14 13 45 45 H 0.97004 * 119.99547 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58766 * 353.37877 * 25 10 8 47 47 H 1.09002 * 109.58364 * 113.65972 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8528 -0.8409 6 6 4.0794 0.8330 1.3084 7 6 4.0801 2.8794 -0.1250 8 6 5.5820 2.8703 -0.2479 9 8 6.1852 1.8182 -0.2356 10 7 6.2551 4.0314 -0.3714 11 6 5.5384 5.3140 -0.3884 12 6 6.1412 6.2299 0.6815 13 6 7.6498 6.3497 0.4536 14 6 8.2975 4.9687 0.5788 15 1 8.0908 4.5583 1.5672 16 7 9.7455 5.0889 0.3915 17 6 10.5482 5.4162 1.4516 18 1 10.1137 5.5861 2.4256 19 6 11.9202 5.5296 1.2742 20 7 12.6916 5.8446 2.2930 21 14 12.6715 5.2364 -0.4107 22 1 12.7191 6.5170 -1.1611 23 1 14.0487 4.7039 -0.2527 24 1 11.8441 4.2554 -1.1577 25 6 7.7193 4.0387 -0.4927 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3635 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7160 -0.1907 1.3979 34 1 5.1694 0.8326 1.3087 35 1 3.7157 1.4226 2.1499 36 1 3.7913 3.4462 0.7601 37 1 3.6459 3.3429 -1.0109 38 1 4.4832 5.1458 -0.1730 39 1 5.6416 5.7797 -1.3684 40 1 5.9549 5.8075 1.6689 41 1 5.6838 7.2170 0.6158 42 1 7.8358 6.7490 -0.5435 43 1 8.0776 7.0203 1.1989 44 1 10.1355 4.9367 -0.4834 45 1 13.6504 5.9242 2.1690 46 1 8.1032 3.0291 -0.3463 47 1 8.0022 4.3972 -1.4824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207645442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = -51.440434 kcal Electronic energy + Delta-G solvation = -22884.425788 eV Core-core repulsion = 19680.361049 eV Total energy + Delta-G solvation = -3204.064740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21771 -37.86315 -36.59963 -34.64108 -32.91681 -32.20562 -31.39243 -29.34846 -27.76139 -26.76115 -25.02482 -23.65063 -22.18222 -21.91774 -20.47099 -19.86746 -18.76011 -17.64485 -17.05552 -16.01484 -15.49208 -15.35138 -14.78354 -14.48586 -14.26834 -13.96947 -13.77547 -13.68398 -13.59635 -13.14797 -12.84071 -12.74096 -12.49136 -12.41098 -12.09936 -11.83010 -11.70374 -11.39454 -11.15347 -11.09603 -11.00857 -10.84991 -10.76742 -10.65289 -10.57983 -10.49416 -10.37291 -10.08967 -9.61501 -9.50979 -8.94346 -8.43950 -7.30161 -5.78231 -3.14773 2.74651 3.08689 3.37628 3.40764 3.45642 4.40441 4.55802 4.58271 4.66311 4.83156 4.89232 4.92257 5.04420 5.10049 5.23790 5.26059 5.33857 5.39678 5.45844 5.48363 5.49751 5.53706 5.57511 5.65618 5.67538 5.72200 5.72719 5.79773 5.91543 5.96147 5.97919 6.04434 6.08572 6.11797 6.28591 6.30717 6.43281 6.46576 6.63125 6.79475 6.94240 7.55234 7.96698 8.31929 8.40269 9.17861 9.90318 10.09272 11.39860 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.003257 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.972297 B = 8595.646235 C = 8944.636140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.135 4.135 8 C 0.512 3.488 9 O -0.539 6.539 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.138 4.138 14 C 0.173 3.827 15 H 0.058 0.942 16 N -0.746 5.746 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.276 1.276 25 C 0.103 3.897 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.093 0.907 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.713 -5.005 -6.620 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.175 4.175 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.063 3.937 15 H 0.076 0.924 16 N -0.388 5.388 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.020 4.020 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.271 -5.521 -6.375 25.695 hybrid contribution 0.701 0.114 -1.150 1.351 sum -23.570 -5.407 -7.525 25.326 Atomic orbital electron populations 1.21782 0.96117 1.01445 1.01646 1.21572 0.95471 0.97036 1.02328 1.21681 0.94790 0.96923 1.01847 1.20912 0.94280 0.94336 0.99945 0.90495 1.21998 1.03368 1.00040 0.95766 1.21782 0.92385 0.99534 1.03812 1.20670 0.90044 0.83271 0.75981 1.90664 1.70305 1.30515 1.50139 1.48132 1.07585 1.06018 1.72411 1.21771 0.95943 0.84089 0.99764 1.21931 0.97623 0.98940 0.98753 1.22242 0.92859 1.00672 1.02021 1.20451 0.84234 0.92237 0.96784 0.92405 1.42680 1.01368 1.85234 1.09524 1.19028 0.88555 1.39458 0.90227 0.89193 1.24670 0.95944 1.01542 0.96896 1.69703 1.04297 1.54644 1.29388 0.86548 0.78840 0.78005 0.85161 1.21087 1.21695 1.20232 1.21977 0.78261 1.02546 0.99217 0.92829 0.92905 0.92938 0.92073 0.91631 0.91952 0.92121 0.92858 0.90536 0.93444 0.88999 0.89240 0.90153 0.91485 0.91681 0.91205 0.92598 0.91087 0.80604 0.93024 0.88903 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.60 16 2 C -0.13 -0.94 5.69 -26.74 -0.15 -1.09 16 3 C -0.11 -0.87 4.68 -26.73 -0.13 -1.00 16 4 C -0.08 -0.75 2.04 -90.62 -0.18 -0.93 16 5 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 6 C -0.15 -1.72 8.69 37.16 0.32 -1.39 16 7 C -0.14 -1.31 3.52 -27.88 -0.10 -1.41 16 8 C 0.51 7.22 7.42 -10.99 -0.08 7.14 16 9 O -0.54 -9.61 13.38 5.56 0.07 -9.54 16 10 N -0.61 -8.45 2.97 -172.75 -0.51 -8.97 16 11 C 0.11 1.13 6.34 -3.70 -0.02 1.11 16 12 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 13 C -0.14 -2.24 5.47 -26.69 -0.15 -2.39 16 14 C 0.17 3.33 2.92 -67.80 -0.20 3.13 16 15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 16 N -0.75 -17.59 4.93 -53.30 -0.26 -17.85 16 17 C -0.24 -6.83 10.41 -15.06 -0.16 -6.99 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16 21 Si 0.88 22.19 27.74 -169.99 -4.71 17.47 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C 0.10 1.74 5.90 -3.70 -0.02 1.72 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 6.56 -51.93 -0.34 0.17 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.54 6.56 -51.93 -0.34 0.19 16 34 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 37 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 38 H 0.08 0.62 5.93 -51.93 -0.31 0.32 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.36 8.38 5.66 -40.82 -0.23 8.14 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.09 1.78 7.01 -51.93 -0.36 1.42 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -32.40 359.85 -8.60 -41.00 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.63 Total: 5.43 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.75 Total: -4.40 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.00 Total: -55.38 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.40 -8.60 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207645442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.441 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds