Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46622 * 2 1 4 4 C 1.53008 * 109.46622 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46921 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46924 * 305.00285 * 5 4 3 7 7 C 1.53002 * 109.46932 * 64.99605 * 5 4 3 8 8 C 1.50697 * 109.47055 * 184.99824 * 5 4 3 9 9 O 1.21283 * 119.99865 * 344.78260 * 8 5 4 10 10 N 1.34776 * 119.99945 * 164.50402 * 8 5 4 11 11 C 1.46927 * 120.63095 * 354.99976 * 10 8 5 12 12 C 1.53192 * 108.77629 * 233.58765 * 11 10 8 13 13 C 1.53037 * 109.31242 * 305.36560 * 12 11 10 14 14 C 1.53044 * 109.54019 * 61.36340 * 13 12 11 15 15 H 1.09003 * 109.49523 * 58.59128 * 14 13 12 16 16 N 1.46497 * 109.49593 * 178.65079 * 14 13 12 17 17 C 1.36940 * 120.00393 * 274.99899 * 16 14 13 18 18 H 1.08003 * 119.99397 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00036 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99782 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47225 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47365 * 119.99738 * 21 19 17 24 24 H 1.48508 * 109.47075 * 239.99883 * 21 19 17 25 25 C 1.46929 * 120.63019 * 174.72560 * 10 8 5 26 26 H 1.08997 * 109.46754 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47214 * 300.00010 * 1 2 3 28 28 H 1.08995 * 109.46698 * 60.00615 * 1 2 3 29 29 H 1.08994 * 109.47330 * 239.99627 * 2 1 3 30 30 H 1.08997 * 109.47186 * 119.99243 * 2 1 3 31 31 H 1.08994 * 109.47573 * 59.99776 * 3 2 1 32 32 H 1.08995 * 109.47082 * 299.99149 * 3 2 1 33 33 H 1.09001 * 109.47214 * 59.99989 * 4 3 2 34 34 H 1.08997 * 109.47186 * 299.99243 * 4 3 2 35 35 H 1.08991 * 109.47467 * 293.60735 * 7 5 4 36 36 H 1.09002 * 109.46943 * 53.61008 * 7 5 4 37 37 H 1.09000 * 109.47048 * 173.60373 * 7 5 4 38 38 H 1.09005 * 109.58464 * 353.36953 * 11 10 8 39 39 H 1.08993 * 109.59110 * 113.79932 * 11 10 8 40 40 H 1.09007 * 109.49793 * 65.31184 * 12 11 10 41 41 H 1.08995 * 109.49681 * 185.37696 * 12 11 10 42 42 H 1.09000 * 109.46170 * 181.38385 * 13 12 11 43 43 H 1.09001 * 109.45757 * 301.34182 * 13 12 11 44 44 H 0.96998 * 119.99844 * 95.00595 * 16 14 13 45 45 H 0.97004 * 119.99428 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.57784 * 246.20012 * 25 10 8 47 47 H 1.08998 * 109.58692 * 6.62227 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6457 3.4236 -0.8423 7 6 3.6746 3.5699 1.3068 8 6 5.5819 2.8869 -0.1232 9 8 6.2077 1.8666 0.0731 10 7 6.2294 4.0209 -0.4569 11 6 5.4802 5.2344 -0.8101 12 6 5.9662 5.7345 -2.1741 13 6 7.4844 5.9229 -2.1324 14 6 8.1591 4.5803 -1.8417 15 1 7.8835 3.8603 -2.6123 16 7 9.6135 4.7555 -1.8339 17 6 10.3157 4.7046 -3.0085 18 1 9.7971 4.5357 -3.9407 19 6 11.6939 4.8701 -3.0009 20 7 12.3258 5.0755 -1.8648 21 14 12.6515 4.8014 -4.6033 22 1 11.7147 4.5600 -5.7300 23 1 13.3577 6.0906 -4.8137 24 1 13.6436 3.6981 -4.5400 25 6 7.6978 4.0687 -0.4686 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9286 -0.8891 34 1 3.9330 0.9290 0.8909 35 1 2.5899 3.6703 1.3430 36 1 4.0124 2.9696 2.1515 37 1 4.1328 4.5577 1.3567 38 1 4.4160 5.0043 -0.8634 39 1 5.6527 6.0027 -0.0566 40 1 5.7114 5.0036 -2.9416 41 1 5.4872 6.6860 -2.4045 42 1 7.8298 6.3022 -3.0941 43 1 7.7405 6.6354 -1.3482 44 1 10.0792 4.9076 -0.9967 45 1 13.2888 5.1915 -1.8597 46 1 8.0475 4.7439 0.3123 47 1 8.0974 3.0693 -0.2964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207977851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -56.243766 kcal Electronic energy + Delta-G solvation = -22877.447106 eV Core-core repulsion = 19673.174078 eV Total energy + Delta-G solvation = -3204.273028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22956 -37.58319 -36.33191 -34.54155 -33.49732 -32.08841 -31.19774 -29.04222 -28.12224 -25.80948 -24.77559 -23.87351 -22.17876 -22.01476 -21.02062 -19.74476 -18.58681 -17.18189 -17.09570 -15.88562 -15.71136 -15.22838 -14.62533 -14.24351 -14.14304 -13.99351 -13.77133 -13.60851 -13.28994 -13.19285 -12.91990 -12.87405 -12.53512 -12.32544 -12.15871 -11.89129 -11.52920 -11.21241 -11.16001 -11.02083 -10.92717 -10.90962 -10.79349 -10.66902 -10.56773 -10.39662 -10.32345 -10.03700 -9.72084 -9.41013 -8.91105 -8.35106 -6.97979 -5.77413 -3.06799 2.81017 3.15921 3.43397 3.49191 3.51244 4.42074 4.53032 4.59065 4.69195 4.85612 4.90430 4.94711 4.97668 5.16772 5.22941 5.26139 5.31449 5.43602 5.50624 5.53052 5.55743 5.57518 5.65369 5.68827 5.74295 5.76248 5.79547 5.82633 5.86608 5.95615 6.01246 6.05562 6.17467 6.17789 6.24374 6.28017 6.40363 6.56548 6.74147 6.89641 7.05975 7.64044 7.70221 8.37661 8.41450 9.51896 10.07536 10.42608 11.45215 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028447 B = 0.003158 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.061493 B = 8865.289367 C = 9131.018322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.111 4.111 6 H 0.093 0.907 7 C -0.143 4.143 8 C 0.515 3.485 9 O -0.542 6.542 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.105 3.895 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.064 0.936 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.973 -2.105 5.120 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.139 4.139 5 C -0.132 4.132 6 H 0.111 0.889 7 C -0.200 4.200 8 C 0.303 3.697 9 O -0.419 6.419 10 N -0.339 5.339 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.017 4.017 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.544 -2.681 5.050 24.228 hybrid contribution 0.825 0.271 -0.680 1.103 sum -22.718 -2.410 4.370 23.260 Atomic orbital electron populations 1.21778 0.96051 1.01469 1.01666 1.21531 0.95584 0.97029 1.02233 1.21675 0.95224 0.96823 1.02013 1.21440 0.94598 0.94309 1.03568 1.21341 0.92401 0.99081 1.00360 0.88943 1.21800 1.01767 1.00557 0.95907 1.20630 0.89904 0.82818 0.76374 1.90691 1.68917 1.31781 1.50518 1.48124 1.07401 1.11060 1.67316 1.21813 0.95714 0.86916 0.97163 1.21944 0.98205 1.00848 0.96290 1.22278 0.92421 1.00640 1.02414 1.20555 0.85770 0.93904 0.93954 0.93256 1.42325 0.99950 1.86285 1.07704 1.19252 0.89529 1.41347 0.86700 0.91134 1.24751 0.96522 1.02744 0.96912 1.69673 1.08149 1.56062 1.24121 0.86116 0.80047 0.77176 0.82840 1.20561 1.21871 1.21825 1.22072 0.77789 1.03200 0.98674 0.92921 0.92856 0.92824 0.91977 0.91979 0.91765 0.92071 0.91440 0.91022 0.91421 0.91985 0.92066 0.90122 0.91502 0.91901 0.91376 0.91609 0.92506 0.78222 0.93524 0.91810 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -0.94 4.97 -26.73 -0.13 -1.07 16 4 C -0.10 -1.05 4.01 -26.72 -0.11 -1.16 16 5 C -0.11 -1.16 1.87 -91.77 -0.17 -1.34 16 6 H 0.09 0.83 6.58 -51.93 -0.34 0.48 16 7 C -0.14 -1.23 8.54 37.16 0.32 -0.91 16 8 C 0.51 7.83 6.89 -10.99 -0.08 7.75 16 9 O -0.54 -10.52 15.51 5.56 0.09 -10.43 16 10 N -0.61 -9.01 2.97 -172.51 -0.51 -9.52 16 11 C 0.11 1.22 5.38 -3.71 -0.02 1.20 16 12 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 13 C -0.14 -2.35 5.46 -26.69 -0.15 -2.49 16 14 C 0.17 3.42 2.93 -67.59 -0.20 3.22 16 15 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 16 N -0.72 -18.22 5.13 -53.09 -0.27 -18.50 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C 0.11 1.92 5.94 -3.49 -0.02 1.89 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.45 6.71 -51.93 -0.35 0.10 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.07 0.44 6.89 -51.93 -0.36 0.09 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.51 7.06 -51.93 -0.37 0.15 16 38 H 0.08 0.70 5.31 -51.93 -0.28 0.43 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.38 10.26 7.80 -40.82 -0.32 9.94 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.90 7.00 -51.93 -0.36 1.54 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -32.02 364.53 -8.93 -40.95 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -8.68 Total: 5.77 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.75 Total: -3.76 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.06 Total: -55.58 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.02 -8.93 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207977851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.291 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds