Wall clock time and date at job start Tue Mar 31 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 C 1.52999 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47336 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47510 * 305.00870 * 5 4 3 7 7 C 1.53006 * 109.46642 * 65.00389 * 5 4 3 8 8 C 1.50697 * 109.47465 * 185.00368 * 5 4 3 9 9 O 1.21281 * 119.99527 * 333.54626 * 8 5 4 10 10 N 1.34770 * 120.00195 * 153.55461 * 8 5 4 11 11 C 1.46921 * 120.63083 * 184.84462 * 10 8 5 12 12 C 1.53628 * 108.54702 * 126.36480 * 11 10 8 13 13 C 1.53042 * 109.23999 * 54.85249 * 12 11 10 14 14 C 1.53036 * 109.53820 * 298.51035 * 13 12 11 15 15 H 1.08999 * 109.52804 * 301.40114 * 14 13 12 16 16 N 1.46501 * 109.49888 * 181.31590 * 14 13 12 17 17 C 1.36936 * 119.99878 * 85.15880 * 16 14 13 18 18 H 1.08004 * 119.99653 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00130 * 180.02562 * 17 16 14 20 20 N 1.31614 * 119.99829 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47061 * 90.00327 * 21 19 17 23 23 H 1.48499 * 109.47308 * 210.00102 * 21 19 17 24 24 H 1.48503 * 109.47250 * 330.00561 * 21 19 17 25 25 C 1.46931 * 120.63148 * 5.11324 * 10 8 5 26 26 H 1.08997 * 109.47604 * 59.99626 * 1 2 3 27 27 H 1.09006 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47118 * 299.99381 * 1 2 3 29 29 H 1.08997 * 109.47604 * 120.00373 * 2 1 3 30 30 H 1.09004 * 109.46564 * 240.00238 * 2 1 3 31 31 H 1.08996 * 109.47212 * 300.00038 * 3 2 1 32 32 H 1.08997 * 109.46678 * 60.00350 * 3 2 1 33 33 H 1.08997 * 109.47604 * 300.00373 * 4 3 2 34 34 H 1.09012 * 109.46863 * 60.00181 * 4 3 2 35 35 H 1.08997 * 109.47154 * 54.89065 * 7 5 4 36 36 H 1.08996 * 109.47239 * 174.89192 * 7 5 4 37 37 H 1.09006 * 109.47133 * 294.88870 * 7 5 4 38 38 H 1.09002 * 109.58471 * 246.19240 * 11 10 8 39 39 H 1.08997 * 109.59015 * 6.62164 * 11 10 8 40 40 H 1.09003 * 109.62966 * 294.86145 * 12 11 10 41 41 H 1.08997 * 109.43138 * 174.72295 * 12 11 10 42 42 H 1.08997 * 109.45712 * 178.49339 * 13 12 11 43 43 H 1.08999 * 109.44742 * 58.53127 * 13 12 11 44 44 H 0.96999 * 120.00226 * 265.16855 * 16 14 13 45 45 H 0.96998 * 120.00012 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.58399 * 353.38307 * 25 10 8 47 47 H 1.08996 * 109.58043 * 113.65845 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 -0.8422 7 6 3.6747 3.5697 1.3069 8 6 5.5819 2.8867 -0.1233 9 8 6.2234 1.9341 0.2665 10 7 6.2123 3.9469 -0.6665 11 6 7.6640 3.9205 -0.8906 12 6 7.9376 4.2648 -2.3626 13 6 7.2741 5.6022 -2.6994 14 6 5.7606 5.4859 -2.5055 15 1 5.3711 4.6938 -3.1451 16 7 5.1233 6.7570 -2.8582 17 6 4.8002 7.0223 -4.1622 18 1 5.0148 6.2942 -4.9306 19 6 4.1968 8.2269 -4.4965 20 7 3.9357 9.1143 -3.5602 21 14 3.7554 8.5885 -6.2753 22 1 2.3779 8.1072 -6.5511 23 1 3.8256 10.0523 -6.5150 24 1 4.7118 7.8933 -7.1738 25 6 5.4616 5.1534 -1.0404 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9562 0.8900 33 1 3.9330 0.9288 0.8908 34 1 3.9337 0.9285 -0.8892 35 1 4.0324 2.9810 2.1516 36 1 4.1144 4.5663 1.3465 37 1 2.5886 3.6497 1.3536 38 1 8.1468 4.6543 -0.2451 39 1 8.0500 2.9256 -0.6689 40 1 7.5281 3.4839 -3.0035 41 1 9.0129 4.3414 -2.5233 42 1 7.4885 5.8630 -3.7358 43 1 7.6661 6.3777 -2.0413 44 1 4.9303 7.4107 -2.1681 45 1 3.5144 9.9562 -3.7939 46 1 4.3938 4.9721 -0.9173 47 1 5.7665 5.9849 -0.4051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207977852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:33 Heat of formation + Delta-G solvation = -57.370880 kcal Electronic energy + Delta-G solvation = -23142.121187 eV Core-core repulsion = 19937.799284 eV Total energy + Delta-G solvation = -3204.321903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21853 -37.57958 -36.30006 -34.30888 -33.61044 -32.12739 -31.27768 -28.72748 -28.23895 -25.81812 -24.67365 -23.82335 -22.70438 -21.52226 -20.80417 -19.82589 -18.60550 -17.24404 -17.06703 -15.76041 -15.66769 -15.16722 -14.62457 -14.27656 -14.12124 -13.95490 -13.72738 -13.60540 -13.29607 -13.17194 -12.84648 -12.74345 -12.52862 -12.19627 -12.10260 -11.76115 -11.40606 -11.19053 -11.07152 -11.00479 -10.92833 -10.92305 -10.73482 -10.58731 -10.49140 -10.43105 -10.37342 -10.12225 -9.74243 -9.41996 -8.95901 -8.38217 -7.05452 -5.84037 -3.13841 2.79700 3.16986 3.39289 3.45334 3.46354 4.45921 4.58581 4.67031 4.81484 5.00048 5.02313 5.11609 5.14136 5.26933 5.31393 5.37978 5.41924 5.47080 5.54205 5.58156 5.61158 5.65973 5.71080 5.78698 5.80551 5.85282 5.87203 5.89577 5.95498 6.00226 6.09850 6.11520 6.13115 6.30269 6.32970 6.35792 6.37258 6.43962 6.74107 6.81071 6.99308 7.60336 7.65031 8.33133 8.36047 9.45512 9.99700 10.34937 11.38330 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.004506 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.271222 B = 6212.358515 C = 7684.254869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.098 4.098 5 C -0.115 4.115 6 H 0.098 0.902 7 C -0.141 4.141 8 C 0.522 3.478 9 O -0.554 6.554 10 N -0.605 5.605 11 C 0.112 3.888 12 C -0.132 4.132 13 C -0.137 4.137 14 C 0.167 3.833 15 H 0.051 0.949 16 N -0.722 5.722 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.098 3.902 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.088 0.912 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -13.478 8.670 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.136 4.136 5 C -0.136 4.136 6 H 0.116 0.884 7 C -0.199 4.199 8 C 0.310 3.690 9 O -0.433 6.433 10 N -0.338 5.338 11 C -0.010 4.010 12 C -0.171 4.171 13 C -0.178 4.178 14 C 0.056 3.944 15 H 0.069 0.931 16 N -0.363 5.363 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.025 4.025 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.309 -13.954 8.686 16.439 hybrid contribution -0.235 0.735 -0.908 1.192 sum -0.543 -13.219 7.778 15.347 Atomic orbital electron populations 1.21781 0.96015 1.01362 1.01873 1.21517 0.95666 0.97038 1.01969 1.21689 0.95074 0.96771 1.02436 1.21416 0.94926 0.94217 1.03072 1.21381 0.92079 0.99128 1.00992 0.88412 1.21770 1.02136 1.00436 0.95525 1.20660 0.90196 0.81613 0.76525 1.90633 1.68142 1.35050 1.49438 1.48144 1.08446 1.15914 1.61249 1.21677 0.80339 1.02500 0.96524 1.22003 1.00483 0.99117 0.95472 1.22270 0.98315 0.95085 1.02083 1.20494 0.91514 0.90408 0.91980 0.93107 1.42318 1.71469 1.15319 1.07188 1.19202 1.32676 1.00366 0.84915 0.91148 1.24730 1.01549 0.96820 0.97535 1.69651 1.48166 1.08718 1.31423 0.86207 0.78304 0.77228 0.84545 1.21654 1.21741 1.20741 1.22216 0.96630 0.86063 0.97615 0.92667 0.93013 0.92812 0.92139 0.92092 0.91718 0.91643 0.91096 0.91813 0.92148 0.92066 0.91195 0.91835 0.89614 0.91980 0.91494 0.91599 0.92504 0.78207 0.93428 0.89376 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.20 4.97 -26.73 -0.13 -1.33 16 4 C -0.10 -1.15 4.14 -26.73 -0.11 -1.26 16 5 C -0.11 -1.44 1.87 -91.77 -0.17 -1.61 16 6 H 0.10 1.25 6.40 -51.93 -0.33 0.92 16 7 C -0.14 -1.55 8.61 37.16 0.32 -1.23 16 8 C 0.52 8.00 6.78 -10.99 -0.07 7.92 16 9 O -0.55 -9.94 15.65 5.56 0.09 -9.85 16 10 N -0.60 -9.06 2.97 -172.50 -0.51 -9.57 16 11 C 0.11 1.58 6.45 -3.49 -0.02 1.55 16 12 C -0.13 -1.86 6.10 -26.38 -0.16 -2.02 16 13 C -0.14 -2.34 5.46 -26.69 -0.15 -2.49 16 14 C 0.17 3.12 2.92 -67.81 -0.20 2.92 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 N -0.72 -16.94 5.12 -53.31 -0.27 -17.22 16 17 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.10 1.53 5.38 -3.71 -0.02 1.51 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.60 6.68 -51.93 -0.35 0.25 16 33 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.69 7.59 -51.93 -0.39 0.29 16 37 H 0.07 0.66 6.82 -51.93 -0.35 0.31 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.24 7.04 -51.93 -0.37 0.87 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.38 9.53 7.80 -40.82 -0.32 9.21 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.09 1.32 5.20 -51.93 -0.27 1.05 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -29.68 365.40 -8.93 -38.61 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -8.68 Total: 7.21 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.75 Total: -5.08 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.06 Total: -53.12 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.68 -8.93 -38.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207977852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.763 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds