Wall clock time and date at job start Tue Mar 31 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 C 1.52998 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46774 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47044 * 54.99958 * 5 4 3 7 7 C 1.52993 * 109.47265 * 294.99799 * 5 4 3 8 8 C 1.50702 * 109.46439 * 174.99636 * 5 4 3 9 9 O 1.21274 * 120.00331 * 34.69477 * 8 5 4 10 10 N 1.34786 * 119.99675 * 214.68589 * 8 5 4 11 11 C 1.46923 * 120.62965 * 354.58877 * 10 8 5 12 12 C 1.53194 * 108.77436 * 233.58333 * 11 10 8 13 13 C 1.53032 * 109.31251 * 305.36547 * 12 11 10 14 14 C 1.53040 * 109.53738 * 61.36886 * 13 12 11 15 15 H 1.08997 * 109.50150 * 58.58600 * 14 13 12 16 16 N 1.46503 * 109.52787 * 178.66703 * 14 13 12 17 17 C 1.36942 * 119.99836 * 274.85816 * 16 14 13 18 18 H 1.07998 * 119.99938 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99977 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00316 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00032 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47280 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47052 * 119.99781 * 21 19 17 24 24 H 1.48504 * 109.47426 * 239.99960 * 21 19 17 25 25 C 1.46926 * 120.62707 * 174.56355 * 10 8 5 26 26 H 1.08998 * 109.47498 * 299.99953 * 1 2 3 27 27 H 1.09000 * 109.46877 * 60.00235 * 1 2 3 28 28 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47200 * 239.99615 * 2 1 3 30 30 H 1.09000 * 109.46877 * 119.99764 * 2 1 3 31 31 H 1.08998 * 109.46828 * 59.99636 * 3 2 1 32 32 H 1.09004 * 109.46351 * 300.00048 * 3 2 1 33 33 H 1.08995 * 109.47200 * 59.99615 * 4 3 2 34 34 H 1.09000 * 109.46877 * 299.99764 * 4 3 2 35 35 H 1.09001 * 109.47282 * 305.05556 * 7 5 4 36 36 H 1.09001 * 109.47327 * 65.04806 * 7 5 4 37 37 H 1.08996 * 109.47205 * 185.05309 * 7 5 4 38 38 H 1.09000 * 109.58599 * 353.37138 * 11 10 8 39 39 H 1.09006 * 109.58585 * 113.79848 * 11 10 8 40 40 H 1.08995 * 109.49294 * 65.31834 * 12 11 10 41 41 H 1.08997 * 109.49482 * 185.41694 * 12 11 10 42 42 H 1.09002 * 109.46649 * 301.34900 * 13 12 11 43 43 H 1.08997 * 109.44908 * 181.37385 * 13 12 11 44 44 H 0.97005 * 120.00288 * 94.84767 * 16 14 13 45 45 H 0.96999 * 120.00357 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58623 * 246.20041 * 25 10 8 47 47 H 1.08999 * 109.58529 * 6.48884 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4246 0.8413 7 6 3.6758 3.5683 -1.3079 8 6 5.5818 2.8869 0.1246 9 8 6.2345 2.0067 -0.3952 10 7 6.1997 3.8668 0.8135 11 6 5.4358 5.0025 1.3477 12 6 6.0805 6.3036 0.8597 13 6 7.5626 6.3080 1.2410 14 6 8.2697 5.1337 0.5603 15 1 8.1519 5.2149 -0.5202 16 7 9.6946 5.1567 0.8999 17 6 10.5602 5.9264 0.1695 18 1 10.1925 6.5162 -0.6572 19 6 11.9102 5.9486 0.4915 20 7 12.3583 5.2302 1.4993 21 14 13.0911 6.9979 -0.5053 22 1 12.3428 7.7038 -1.5764 23 1 13.7403 7.9939 0.3846 24 1 14.1292 6.1299 -1.1171 25 6 7.6498 3.8193 1.0450 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9562 -0.8901 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 4.0350 2.9792 -2.1517 36 1 2.5897 3.6472 -1.3561 37 1 4.1146 4.5652 -1.3477 38 1 4.4063 4.9494 0.9934 39 1 5.4513 4.9732 2.4373 40 1 5.9833 6.3737 -0.2236 41 1 5.5824 7.1536 1.3260 42 1 7.6598 6.2129 2.3225 43 1 8.0181 7.2435 0.9163 44 1 10.0249 4.6268 1.6423 45 1 13.3017 5.2459 1.7246 46 1 7.8459 3.6935 2.1098 47 1 8.0807 2.9841 0.4928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207977853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:37 Heat of formation + Delta-G solvation = -55.749899 kcal Electronic energy + Delta-G solvation = -22870.478267 eV Core-core repulsion = 19666.226655 eV Total energy + Delta-G solvation = -3204.251612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22267 -37.60133 -36.35202 -34.51677 -33.49158 -32.09662 -31.20754 -29.02751 -28.19929 -25.80602 -24.78331 -23.87261 -22.17295 -22.03764 -21.03132 -19.81862 -18.45154 -17.24496 -17.17250 -15.86150 -15.62068 -15.18897 -14.68438 -14.28986 -14.15189 -14.02724 -13.77310 -13.54722 -13.36746 -13.17550 -12.91496 -12.87507 -12.52898 -12.35448 -12.10354 -11.90629 -11.54841 -11.24412 -11.20766 -11.03016 -10.91687 -10.89988 -10.80592 -10.68156 -10.55279 -10.39634 -10.32666 -10.04019 -9.72129 -9.39575 -8.91207 -8.35311 -6.98103 -5.77412 -3.06909 2.80194 3.15739 3.43320 3.49099 3.51161 4.41381 4.52995 4.58985 4.67340 4.84746 4.88624 4.94027 4.99536 5.16510 5.23351 5.26079 5.31230 5.43097 5.50269 5.53073 5.54924 5.59010 5.64970 5.68307 5.72720 5.76440 5.79157 5.81869 5.85649 5.97131 5.98340 6.05779 6.16013 6.17503 6.21401 6.27422 6.40373 6.56485 6.73964 6.89710 7.05829 7.63873 7.70129 8.37569 8.41390 9.51803 10.07370 10.42458 11.45188 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035365 B = 0.003077 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.553252 B = 9096.861722 C = 9365.710158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.111 4.111 6 H 0.090 0.910 7 C -0.141 4.141 8 C 0.516 3.484 9 O -0.542 6.542 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.105 3.895 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.386 -4.087 -0.578 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.141 4.141 5 C -0.132 4.132 6 H 0.108 0.892 7 C -0.199 4.199 8 C 0.304 3.696 9 O -0.419 6.419 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.018 4.018 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.915 -4.458 -0.983 24.347 hybrid contribution 0.900 0.606 -0.099 1.089 sum -23.016 -3.852 -1.082 23.361 Atomic orbital electron populations 1.21776 0.96016 1.01481 1.01696 1.21532 0.95633 0.97009 1.02207 1.21668 0.95073 0.96838 1.02107 1.21464 0.94902 0.94320 1.03396 1.21361 0.92331 0.98976 1.00525 0.89204 1.21763 1.01626 1.00575 0.95930 1.20633 0.90045 0.81267 0.77699 1.90686 1.67233 1.37391 1.46585 1.48154 1.08891 1.22491 1.54413 1.21810 0.95167 0.86064 0.98676 1.21930 0.97794 0.96088 1.01359 1.22277 0.92841 1.01732 1.00924 1.20469 0.85476 0.90956 0.97303 0.93275 1.42327 1.00802 1.54997 1.38126 1.19250 0.88641 1.19314 1.09609 0.91130 1.24753 0.97013 1.00476 0.98698 1.69673 1.14100 1.44149 1.30091 0.86116 0.81255 0.79597 0.79204 1.20566 1.21870 1.21825 1.21984 0.78235 1.00591 1.00945 0.92828 0.92815 0.92912 0.91937 0.92038 0.92061 0.91639 0.90738 0.91784 0.91753 0.91436 0.92179 0.90063 0.91522 0.91899 0.91365 0.92493 0.91596 0.78215 0.93521 0.91828 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.91 4.97 -26.73 -0.13 -1.04 16 4 C -0.10 -1.04 4.26 -26.73 -0.11 -1.16 16 5 C -0.11 -1.17 1.92 -91.77 -0.18 -1.35 16 6 H 0.09 0.78 6.19 -51.93 -0.32 0.45 16 7 C -0.14 -1.33 8.70 37.15 0.32 -1.00 16 8 C 0.52 7.87 6.69 -10.98 -0.07 7.80 16 9 O -0.54 -10.54 15.78 5.56 0.09 -10.46 16 10 N -0.61 -9.08 2.97 -172.76 -0.51 -9.59 16 11 C 0.11 1.21 6.15 -3.71 -0.02 1.19 16 12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 13 C -0.14 -2.35 5.47 -26.69 -0.15 -2.50 16 14 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 15 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 16 N -0.72 -18.23 5.12 -53.31 -0.27 -18.50 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C 0.11 1.92 5.91 -3.71 -0.02 1.90 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.46 6.68 -51.93 -0.35 0.12 16 33 H 0.07 0.86 8.01 -51.93 -0.42 0.45 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.48 6.82 -51.93 -0.35 0.12 16 37 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 38 H 0.08 0.71 5.51 -51.93 -0.29 0.43 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.91 7.00 -51.93 -0.36 1.54 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -32.05 366.48 -8.95 -40.99 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.71 Total: 5.76 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.76 Total: -3.71 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.06 Total: -55.67 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.05 -8.95 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207977853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.757 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds