Wall clock time and date at job start Tue Mar 31 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 C 1.53001 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47117 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47064 * 55.00551 * 5 4 3 7 7 C 1.53000 * 109.47462 * 295.00087 * 5 4 3 8 8 C 1.50699 * 109.47380 * 174.99945 * 5 4 3 9 9 O 1.21287 * 119.99687 * 95.34111 * 8 5 4 10 10 N 1.34773 * 120.00464 * 275.34601 * 8 5 4 11 11 C 1.46929 * 120.62699 * 355.32088 * 10 8 5 12 12 C 1.53190 * 108.77722 * 126.37077 * 11 10 8 13 13 C 1.53041 * 109.31663 * 54.62920 * 12 11 10 14 14 C 1.53041 * 109.53891 * 298.64142 * 13 12 11 15 15 H 1.09004 * 109.49158 * 301.37594 * 14 13 12 16 16 N 1.46500 * 109.49842 * 181.31665 * 14 13 12 17 17 C 1.36933 * 120.00332 * 84.99777 * 16 14 13 18 18 H 1.08004 * 120.00019 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00126 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99792 * 359.71970 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47045 * 60.00014 * 21 19 17 23 23 H 1.48496 * 109.47238 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47255 * 299.99962 * 21 19 17 25 25 C 1.46923 * 120.63514 * 175.29487 * 10 8 5 26 26 H 1.09004 * 109.46546 * 299.99676 * 1 2 3 27 27 H 1.08993 * 109.47526 * 59.99663 * 1 2 3 28 28 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47055 * 240.00253 * 2 1 3 30 30 H 1.08993 * 109.47526 * 120.00337 * 2 1 3 31 31 H 1.09001 * 109.46722 * 60.00890 * 3 2 1 32 32 H 1.08993 * 109.47246 * 300.00509 * 3 2 1 33 33 H 1.09006 * 109.47055 * 60.00253 * 4 3 2 34 34 H 1.08999 * 109.47378 * 300.00768 * 4 3 2 35 35 H 1.08991 * 109.47121 * 305.11210 * 7 5 4 36 36 H 1.09001 * 109.46815 * 65.11020 * 7 5 4 37 37 H 1.09002 * 109.47437 * 185.10630 * 7 5 4 38 38 H 1.08998 * 109.58605 * 6.57577 * 11 10 8 39 39 H 1.09004 * 109.58490 * 246.15411 * 11 10 8 40 40 H 1.08999 * 109.49450 * 294.67817 * 12 11 10 41 41 H 1.08997 * 109.50030 * 174.58789 * 12 11 10 42 42 H 1.08995 * 109.46197 * 178.61789 * 13 12 11 43 43 H 1.09009 * 109.44700 * 58.64899 * 13 12 11 44 44 H 0.97000 * 119.99612 * 264.99497 * 16 14 13 45 45 H 0.97000 * 119.99736 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.59252 * 113.84243 * 25 10 8 47 47 H 1.09008 * 109.58287 * 353.41639 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6451 3.4237 0.8432 7 6 3.6758 3.5695 -1.3060 8 6 5.5818 2.8868 0.1258 9 8 6.2726 2.9552 -0.8688 10 7 6.1574 2.8124 1.3421 11 6 5.3369 2.8320 2.5609 12 6 5.6942 1.6118 3.4155 13 6 7.2027 1.5986 3.6734 14 6 7.9487 1.4907 2.3415 15 1 7.6409 0.5816 1.8248 16 7 9.3916 1.4464 2.5913 17 6 10.0005 0.2540 2.8784 18 1 9.4171 -0.6539 2.9210 19 6 11.3675 0.2122 3.1157 20 7 12.0794 1.3179 3.0593 21 14 12.1981 -1.4144 3.5080 22 1 12.0014 -2.3561 2.3768 23 1 13.6510 -1.1903 3.7179 24 1 11.6024 -1.9898 4.7405 25 6 7.6170 2.7095 1.4747 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.0340 2.9807 -2.1503 36 1 2.5898 3.6494 -1.3535 37 1 4.1155 4.5661 -1.3454 38 1 4.2815 2.7931 2.2915 39 1 5.5394 3.7437 3.1230 40 1 5.4073 0.7019 2.8884 41 1 5.1631 1.6651 4.3658 42 1 7.4562 0.7449 4.3018 43 1 7.4927 2.5201 4.1783 44 1 9.9156 2.2618 2.5534 45 1 13.0347 1.2886 3.2248 46 1 8.0054 3.6111 1.9482 47 1 8.0659 2.5897 0.4886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207977854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:41 Heat of formation + Delta-G solvation = -55.665833 kcal Electronic energy + Delta-G solvation = -23144.892910 eV Core-core repulsion = 19940.644943 eV Total energy + Delta-G solvation = -3204.247967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23969 -37.54020 -36.46977 -34.47330 -33.44314 -32.09977 -31.20561 -28.83970 -28.38759 -25.87195 -24.70118 -23.79099 -22.18648 -22.03811 -21.04060 -19.84447 -18.45049 -17.28619 -17.17666 -15.90456 -15.52444 -15.21727 -14.79018 -14.25747 -14.12826 -14.02543 -13.68780 -13.56860 -13.36221 -13.15030 -12.90350 -12.73671 -12.58271 -12.37238 -12.07214 -11.80957 -11.50472 -11.29153 -11.23168 -10.99939 -10.93110 -10.89007 -10.81851 -10.66584 -10.57129 -10.40795 -10.33342 -10.09774 -9.71427 -9.39153 -8.90517 -8.35496 -6.98520 -5.77280 -3.06941 2.78515 3.17778 3.44101 3.48623 3.49561 4.41208 4.57724 4.59122 4.64836 4.84010 4.87174 4.92627 5.05252 5.16432 5.23099 5.25093 5.31490 5.44871 5.50844 5.54085 5.57322 5.59452 5.67209 5.69400 5.75468 5.77424 5.81016 5.83572 5.86332 5.98055 6.02640 6.06177 6.16062 6.17087 6.20344 6.27169 6.40353 6.56224 6.73892 6.89350 7.05501 7.64056 7.68786 8.37755 8.41559 9.51749 10.07326 10.42435 11.45198 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.003668 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.888780 B = 7631.292718 C = 8125.839036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.110 4.110 5 C -0.110 4.110 6 H 0.091 0.909 7 C -0.133 4.133 8 C 0.515 3.485 9 O -0.543 6.543 10 N -0.605 5.605 11 C 0.105 3.895 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.106 3.894 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.546 2.902 -2.973 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.148 4.148 5 C -0.132 4.132 6 H 0.109 0.891 7 C -0.191 4.191 8 C 0.303 3.697 9 O -0.420 6.420 10 N -0.338 5.338 11 C -0.018 4.018 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.017 4.017 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.076 2.767 -3.487 23.502 hybrid contribution 0.755 -0.619 0.490 1.093 sum -22.321 2.148 -2.997 22.624 Atomic orbital electron populations 1.21771 0.95981 1.01524 1.01681 1.21541 0.95698 0.96919 1.02278 1.21652 0.94656 0.96929 1.02253 1.21567 0.95720 0.94232 1.03284 1.21364 0.92344 0.98713 1.00760 0.89137 1.21662 1.00584 1.00675 0.96153 1.20634 0.90364 0.75935 0.82769 1.90687 1.64950 1.49806 1.36522 1.48136 1.07804 1.72331 1.05577 1.21825 0.94877 0.99108 0.85959 1.21935 0.98469 0.97591 0.99169 1.22281 0.92457 1.02232 1.00805 1.20470 0.86178 0.95209 0.92338 0.93324 1.42304 1.01277 1.08387 1.84247 1.19159 0.90969 0.86912 1.40031 0.91232 1.24748 0.96377 0.97057 1.02624 1.69654 1.06511 1.25813 1.56047 0.86261 0.78527 0.83185 0.78165 1.21228 1.21669 1.21261 1.21980 0.78347 0.99065 1.02301 0.92796 0.92851 0.92879 0.91974 0.91897 0.91908 0.91569 0.91132 0.91250 0.91625 0.92041 0.92479 0.90030 0.91500 0.91888 0.91412 0.91605 0.92506 0.78199 0.93402 0.91839 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.87 4.97 -26.73 -0.13 -1.00 16 4 C -0.11 -1.06 4.52 -26.73 -0.12 -1.18 16 5 C -0.11 -1.18 1.89 -91.77 -0.17 -1.35 16 6 H 0.09 0.78 6.29 -51.93 -0.33 0.46 16 7 C -0.13 -1.35 8.26 37.16 0.31 -1.05 16 8 C 0.52 7.88 6.80 -10.99 -0.07 7.80 16 9 O -0.54 -10.56 15.63 5.55 0.09 -10.47 16 10 N -0.61 -9.05 2.97 -172.77 -0.51 -9.56 16 11 C 0.11 1.21 6.25 -3.71 -0.02 1.18 16 12 C -0.13 -1.66 6.08 -26.61 -0.16 -1.83 16 13 C -0.14 -2.34 5.47 -26.69 -0.15 -2.48 16 14 C 0.17 3.40 2.92 -67.81 -0.20 3.20 16 15 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.72 -18.17 5.12 -53.31 -0.27 -18.44 16 17 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 21 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.11 1.93 5.89 -3.71 -0.02 1.91 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 6.68 -51.93 -0.35 0.12 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.04 -51.93 -0.42 0.34 16 36 H 0.06 0.47 6.82 -51.93 -0.35 0.12 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.72 5.27 -51.93 -0.27 0.44 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 44 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.09 1.89 7.03 -51.92 -0.37 1.53 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -31.89 366.13 -8.97 -40.85 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.70 Total: 5.94 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.78 Total: -3.76 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.06 Total: -55.56 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.89 -8.97 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207977854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.812 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds