Wall clock time and date at job start Tue Mar 31 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47045 * 2 1 4 4 C 1.53001 * 109.47045 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99719 * 269.99697 * 5 4 3 7 7 H 1.07999 * 120.00025 * 36.53078 * 6 5 4 8 8 C 1.38810 * 119.99870 * 216.52280 * 6 5 4 9 9 N 1.31620 * 119.99836 * 22.48344 * 8 6 5 10 10 Si 1.86799 * 120.00097 * 202.47803 * 8 6 5 11 11 H 1.48506 * 109.46899 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47452 * 120.00153 * 10 8 6 13 13 H 1.48507 * 109.47145 * 240.00452 * 10 8 6 14 14 C 1.46501 * 120.00388 * 89.99690 * 5 4 3 15 15 C 1.52999 * 109.47411 * 277.19307 * 14 5 4 16 16 C 1.53348 * 109.41763 * 294.97148 * 15 14 5 17 17 C 1.53194 * 109.15015 * 178.67396 * 16 15 14 18 18 N 1.46924 * 108.89229 * 54.57523 * 17 16 15 19 19 C 1.34778 * 120.62824 * 126.29575 * 18 17 16 20 20 C 1.50706 * 119.99727 * 174.60362 * 19 18 17 21 21 O 1.21276 * 120.00049 * 354.61319 * 19 18 17 22 22 C 1.46929 * 118.74108 * 306.32258 * 18 17 16 23 23 C 1.53035 * 109.46069 * 174.84454 * 15 14 5 24 24 H 1.09001 * 109.47295 * 299.99983 * 1 2 3 25 25 H 1.09002 * 109.46913 * 59.99699 * 1 2 3 26 26 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46982 * 240.00465 * 2 1 3 28 28 H 1.08993 * 109.47077 * 119.99716 * 2 1 3 29 29 H 1.09001 * 109.47061 * 59.99873 * 3 2 1 30 30 H 1.09003 * 109.46987 * 299.99984 * 3 2 1 31 31 H 1.08991 * 109.47121 * 59.99880 * 4 3 2 32 32 H 1.09002 * 109.46913 * 300.00300 * 4 3 2 33 33 H 0.97005 * 119.99585 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46957 * 157.19035 * 14 5 4 35 35 H 1.09000 * 109.46955 * 37.19589 * 14 5 4 36 36 H 1.08999 * 109.45982 * 54.86809 * 15 14 5 37 37 H 1.09005 * 109.68562 * 58.70672 * 16 15 14 38 38 H 1.08999 * 109.47302 * 298.51259 * 16 15 14 39 39 H 1.08998 * 109.58318 * 294.71488 * 17 16 15 40 40 H 1.09000 * 109.58616 * 174.43930 * 17 16 15 41 41 H 1.08998 * 109.46906 * 354.26450 * 20 19 18 42 42 H 1.08997 * 109.46459 * 114.26761 * 20 19 18 43 43 H 1.09001 * 109.46902 * 234.26051 * 20 19 18 44 44 H 1.09001 * 109.58668 * 173.39251 * 22 18 17 45 45 H 1.08997 * 109.58391 * 293.68011 * 22 18 17 46 46 H 1.08999 * 109.50094 * 61.43462 * 23 15 14 47 47 H 1.09005 * 109.52131 * 301.35214 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2861 3.4700 -1.1857 7 1 3.6339 3.2969 -2.0290 8 6 5.3551 4.3475 -1.3037 9 7 6.3832 4.2456 -0.4883 10 14 5.3346 5.6730 -2.6198 11 1 4.0749 5.5761 -3.4002 12 1 5.4170 7.0095 -1.9777 13 1 6.4953 5.4874 -3.5274 14 6 4.3030 3.5137 1.2690 15 6 2.9868 4.0834 1.8018 16 6 2.4748 5.1658 0.8437 17 6 1.1406 5.7085 1.3655 18 7 1.3211 6.1630 2.7509 19 6 0.9706 7.4125 3.1149 20 6 1.0474 7.8252 4.5623 21 8 0.5932 8.2046 2.2776 22 6 1.8914 5.2298 3.7320 23 6 3.2181 4.6915 3.1870 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9329 0.9289 -0.8908 32 1 3.9337 0.9285 0.8891 33 1 7.1304 4.8586 -0.5710 34 1 5.0125 4.3258 1.1101 35 1 4.7132 2.8091 1.9924 36 1 2.2484 3.2849 1.8744 37 1 2.3307 4.7391 -0.1490 38 1 3.2013 5.9766 0.7898 39 1 0.3883 4.9203 1.3345 40 1 0.8189 6.5452 0.7453 41 1 1.3062 6.9606 5.1734 42 1 1.8099 8.5951 4.6805 43 1 0.0817 8.2186 4.8797 44 1 2.0676 5.7512 4.6729 45 1 1.1993 4.4039 3.8959 46 1 3.9377 5.5066 3.1110 47 1 3.6045 3.9266 3.8607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208674148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:40 Heat of formation + Delta-G solvation = -36.595341 kcal Electronic energy + Delta-G solvation = -23946.607310 eV Core-core repulsion = 20743.186302 eV Total energy + Delta-G solvation = -3203.421008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90760 -37.60287 -36.02526 -34.18870 -32.65957 -31.32022 -31.06104 -29.26703 -27.98568 -26.49233 -24.19458 -22.97906 -22.59658 -21.06523 -20.17525 -19.78878 -18.56978 -16.97333 -16.66618 -15.64369 -15.25657 -14.90275 -14.79181 -14.10971 -13.83485 -13.64974 -13.58447 -13.36213 -13.19197 -12.89613 -12.74902 -12.55245 -12.22989 -12.00941 -11.84134 -11.62777 -11.26060 -11.10775 -10.93013 -10.83825 -10.71463 -10.56776 -10.37259 -10.29436 -10.18783 -10.03417 -9.85263 -9.68212 -9.42130 -9.30934 -8.39974 -8.38068 -6.53815 -5.78884 -3.31975 2.77021 3.23378 3.36435 3.46572 3.48486 4.48969 4.69096 4.87148 5.15014 5.18668 5.28465 5.34755 5.35920 5.39203 5.45677 5.53058 5.56807 5.61772 5.69611 5.83117 5.88282 5.93724 5.99568 6.08951 6.12894 6.22988 6.32143 6.36768 6.38369 6.40558 6.46802 6.60276 6.63953 6.69595 6.85269 6.96633 7.03442 7.05331 7.18206 7.27757 7.62393 7.70932 7.83644 8.33496 8.53412 9.22410 9.85563 10.43744 11.22450 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.006883 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.105205 B = 4067.156290 C = 5622.229153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.138 4.138 4 C 0.148 3.852 5 N -0.583 5.583 6 C -0.254 4.254 7 H 0.059 0.941 8 C 0.015 3.985 9 N -0.887 5.887 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.290 1.290 14 C 0.158 3.842 15 C -0.107 4.107 16 C -0.112 4.112 17 C 0.107 3.893 18 N -0.606 5.606 19 C 0.508 3.492 20 C -0.178 4.178 21 O -0.557 6.557 22 C 0.105 3.895 23 C -0.130 4.130 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.253 0.747 34 H 0.091 0.909 35 H 0.019 0.981 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -2.006 10.274 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.021 3.979 5 N -0.302 5.302 6 C -0.383 4.383 7 H 0.076 0.924 8 C -0.185 4.185 9 N -0.529 5.529 10 Si 0.715 3.285 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.217 1.217 14 C 0.031 3.969 15 C -0.127 4.127 16 C -0.150 4.150 17 C -0.015 4.015 18 N -0.340 5.340 19 C 0.297 3.703 20 C -0.238 4.238 21 O -0.436 6.436 22 C -0.018 4.018 23 C -0.168 4.168 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.308 -1.510 9.817 13.613 hybrid contribution 0.093 0.685 -0.582 0.904 sum -9.215 -0.824 9.235 13.072 Atomic orbital electron populations 1.21762 0.96839 1.00549 1.01458 1.21510 0.94912 0.98537 1.01179 1.22327 0.99730 0.94297 1.01460 1.20853 0.91030 0.87425 0.98605 1.43738 1.76195 1.08101 1.02203 1.18961 1.06866 1.21391 0.91110 0.92361 1.25080 0.94325 1.01394 0.97686 1.70057 1.05834 1.36962 1.40053 0.86506 0.77673 0.82571 0.81774 1.19988 1.21418 1.21744 1.20868 0.93131 0.97104 0.85761 1.21963 1.01539 0.96865 0.92371 1.21853 0.94277 0.98155 1.00693 1.21784 0.98905 0.99350 0.81423 1.48240 1.61895 1.12597 1.11253 1.20741 0.76873 0.81412 0.91280 1.22007 1.04812 1.03496 0.93448 1.90687 1.48336 1.51048 1.53522 1.21889 0.95712 0.92675 0.91493 1.21952 0.95840 1.00650 0.98401 0.93210 0.93046 0.93626 0.92577 0.92790 0.92700 0.92554 0.93798 0.95316 0.93741 0.89112 0.96300 0.92253 0.88832 0.92523 0.92216 0.89860 0.89967 0.89031 0.89146 0.89927 0.91706 0.91737 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.14 -2.32 5.39 -26.73 -0.14 -2.46 16 4 C 0.15 2.94 5.70 -4.04 -0.02 2.92 16 5 N -0.58 -13.43 2.20 -173.24 -0.38 -13.81 16 6 C -0.25 -6.54 7.94 -15.06 -0.12 -6.66 16 7 H 0.06 1.53 7.92 -52.49 -0.42 1.12 16 8 C 0.02 0.41 4.86 -17.43 -0.08 0.33 16 9 N -0.89 -24.88 11.58 55.49 0.64 -24.24 16 10 Si 0.89 21.43 29.61 -169.99 -5.03 16.39 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.16 3.41 4.69 -4.04 -0.02 3.39 16 15 C -0.11 -1.86 2.23 -90.42 -0.20 -2.06 16 16 C -0.11 -2.10 5.06 -26.45 -0.13 -2.23 16 17 C 0.11 1.77 6.43 -3.71 -0.02 1.74 16 18 N -0.61 -8.96 2.97 -172.77 -0.51 -9.47 16 19 C 0.51 7.76 7.80 -10.98 -0.09 7.67 16 20 C -0.18 -1.79 10.01 36.01 0.36 -1.43 16 21 O -0.56 -10.91 16.52 5.56 0.09 -10.81 16 22 C 0.11 1.25 6.25 -3.71 -0.02 1.22 16 23 C -0.13 -1.85 5.36 -26.61 -0.14 -2.00 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.92 5.74 -51.93 -0.30 0.62 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 32 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 33 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.09 2.29 5.59 -51.93 -0.29 2.00 16 35 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 36 H 0.06 1.01 5.69 -51.93 -0.30 0.72 16 37 H 0.09 1.96 6.67 -51.93 -0.35 1.61 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 41 H 0.08 0.63 5.31 -51.93 -0.28 0.36 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.76 5.25 -51.93 -0.27 0.48 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -29.98 359.10 -8.65 -38.62 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.43 Total: 0.77 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.43 Total: -2.87 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.25 Total: -47.52 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.98 -8.65 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208674148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.029 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds