Wall clock time and date at job start Tue Mar 31 2020 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 C 1.52999 * 109.47117 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47117 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00072 * 270.00302 * 5 4 3 7 7 H 1.07994 * 120.00003 * 323.02074 * 6 5 4 8 8 C 1.38817 * 119.99614 * 143.02324 * 6 5 4 9 9 N 1.31619 * 119.99894 * 332.86375 * 8 6 5 10 10 Si 1.86800 * 119.99694 * 152.86725 * 8 6 5 11 11 H 1.48499 * 109.47193 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47275 * 120.00025 * 10 8 6 13 13 H 1.48498 * 109.46912 * 239.99777 * 10 8 6 14 14 C 1.46499 * 119.99654 * 90.00557 * 5 4 3 15 15 C 1.52994 * 109.47364 * 83.76181 * 14 5 4 16 16 H 1.09003 * 109.49907 * 305.49409 * 15 14 5 17 17 C 1.53044 * 109.49904 * 185.43328 * 15 14 5 18 18 C 1.53036 * 109.54078 * 178.68377 * 17 15 14 19 19 C 1.53198 * 109.31382 * 61.36292 * 18 17 15 20 20 N 1.46932 * 108.77517 * 305.36523 * 19 18 17 21 21 C 1.34771 * 120.63308 * 233.61019 * 20 19 18 22 22 C 1.50701 * 119.99722 * 359.97438 * 21 20 19 23 23 O 1.21280 * 119.99989 * 179.97438 * 21 20 19 24 24 C 1.46943 * 118.75957 * 53.58497 * 20 19 18 25 25 H 1.08997 * 109.47420 * 59.99701 * 1 2 3 26 26 H 1.09003 * 109.47626 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47265 * 300.00053 * 1 2 3 28 28 H 1.09005 * 109.47265 * 239.99947 * 2 1 3 29 29 H 1.08997 * 109.47420 * 120.00299 * 2 1 3 30 30 H 1.09005 * 109.46936 * 60.00343 * 3 2 1 31 31 H 1.08997 * 109.47138 * 300.00472 * 3 2 1 32 32 H 1.09005 * 109.46780 * 60.00440 * 4 3 2 33 33 H 1.08997 * 109.47659 * 300.00345 * 4 3 2 34 34 H 0.97002 * 119.99816 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46928 * 323.76065 * 14 5 4 36 36 H 1.08998 * 109.47200 * 203.76306 * 14 5 4 37 37 H 1.09003 * 109.45569 * 298.70208 * 17 15 14 38 38 H 1.08997 * 109.46296 * 58.66202 * 17 15 14 39 39 H 1.08998 * 109.50186 * 181.31417 * 18 17 15 40 40 H 1.08999 * 109.49911 * 301.41725 * 18 17 15 41 41 H 1.08998 * 109.58646 * 65.15242 * 19 18 17 42 42 H 1.09000 * 109.59048 * 185.57975 * 19 18 17 43 43 H 1.09002 * 109.46835 * 60.00570 * 22 21 20 44 44 H 1.09006 * 109.46550 * 179.97438 * 22 21 20 45 45 H 1.08997 * 109.47631 * 299.99971 * 22 21 20 46 46 H 1.09000 * 109.61071 * 186.63899 * 24 20 19 47 47 H 1.08999 * 109.55693 * 66.22051 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2870 3.4685 -1.1861 7 1 4.6921 2.9250 -2.0269 8 6 3.9983 4.8209 -1.3078 9 7 3.0621 5.3639 -0.5587 10 14 4.9382 5.8698 -2.5348 11 1 5.9307 5.0269 -3.2487 12 1 3.9889 6.4553 -3.5152 13 1 5.6427 6.9614 -1.8155 14 6 4.3021 3.5149 1.2685 15 6 5.6935 3.1497 1.7892 16 1 5.7851 2.0654 1.8530 17 6 5.8965 3.7618 3.1771 18 6 7.2754 3.3698 3.7129 19 6 8.3573 3.9206 2.7785 20 7 8.0853 3.4529 1.4124 21 6 9.0357 2.8113 0.7043 22 6 10.3930 2.5679 1.3123 23 8 8.7986 2.4297 -0.4222 24 6 6.7574 3.6972 0.8327 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9563 -0.8899 32 1 3.9336 0.9285 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 2.8601 6.3088 -0.6440 35 1 3.5503 3.2123 1.9975 36 1 4.2438 4.5921 1.1123 37 1 5.8288 4.8476 3.1085 38 1 5.1257 3.3922 3.8534 39 1 7.4100 3.7866 4.7109 40 1 7.3526 2.2835 3.7583 41 1 8.3402 5.0102 2.8019 42 1 9.3350 3.5614 3.0998 43 1 10.2844 1.9651 2.2139 44 1 11.0225 2.0397 0.5961 45 1 10.8536 3.5225 1.5668 46 1 6.6793 3.1908 -0.1293 47 1 6.6101 4.7687 0.6969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208981762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:58 Heat of formation + Delta-G solvation = -42.816305 kcal Electronic energy + Delta-G solvation = -23879.662020 eV Core-core repulsion = 20675.971251 eV Total energy + Delta-G solvation = -3203.690769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75682 -37.39394 -36.01064 -34.10561 -32.72717 -31.35978 -30.83854 -29.52129 -27.68097 -25.55945 -24.71914 -23.69367 -22.14086 -20.85204 -20.30644 -19.36121 -18.59264 -16.81485 -16.46949 -15.52186 -15.14897 -14.77107 -14.61785 -14.26097 -14.02118 -13.70256 -13.43114 -13.30737 -12.99240 -12.86137 -12.62093 -12.41520 -12.05119 -11.93716 -11.79962 -11.77887 -11.30431 -11.05613 -10.93842 -10.75334 -10.62864 -10.49857 -10.38275 -10.25061 -10.17707 -9.87160 -9.70224 -9.69780 -9.49074 -9.38522 -8.38998 -8.18015 -6.52600 -5.77850 -3.24901 2.96863 3.38453 3.41446 3.48997 3.57426 4.54683 4.80008 4.92610 5.09560 5.19168 5.26044 5.33356 5.39915 5.42323 5.51705 5.58196 5.59114 5.67583 5.72559 5.84126 5.87743 6.02111 6.08799 6.13487 6.26271 6.26536 6.31961 6.40401 6.42988 6.48355 6.54460 6.57685 6.73610 6.79587 6.86519 6.93189 6.99579 7.14832 7.18044 7.37370 7.61623 7.83601 7.91855 8.55372 8.56966 9.24519 9.87826 10.48012 11.23926 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.006280 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.535270 B = 4457.210699 C = 5461.074595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.583 5.583 6 C -0.255 4.255 7 H 0.060 0.940 8 C 0.018 3.982 9 N -0.880 5.880 10 Si 0.877 3.123 11 H -0.273 1.273 12 H -0.291 1.291 13 H -0.288 1.288 14 C 0.163 3.837 15 C -0.117 4.117 16 H 0.056 0.944 17 C -0.115 4.115 18 C -0.132 4.132 19 C 0.107 3.893 20 N -0.614 5.614 21 C 0.503 3.497 22 C -0.172 4.172 23 O -0.544 6.544 24 C 0.128 3.872 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.252 0.748 35 H 0.025 0.975 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.110 0.890 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.392 -4.517 10.266 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.022 3.978 5 N -0.303 5.303 6 C -0.385 4.385 7 H 0.078 0.922 8 C -0.182 4.182 9 N -0.522 5.522 10 Si 0.706 3.294 11 H -0.197 1.197 12 H -0.218 1.218 13 H -0.215 1.215 14 C 0.036 3.964 15 C -0.138 4.138 16 H 0.075 0.925 17 C -0.153 4.153 18 C -0.170 4.170 19 C -0.017 4.017 20 N -0.347 5.347 21 C 0.291 3.709 22 C -0.232 4.232 23 O -0.421 6.421 24 C 0.007 3.993 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.204 -4.553 9.642 12.868 hybrid contribution 0.342 0.791 -0.406 0.952 sum 7.546 -3.762 9.236 12.506 Atomic orbital electron populations 1.21757 0.96888 1.00289 1.01638 1.21536 0.95008 0.98817 1.00772 1.22153 0.99299 0.93709 1.02045 1.20901 0.91234 0.87662 0.97961 1.43828 1.74402 1.09961 1.02073 1.19003 1.35837 0.92144 0.91523 0.92233 1.25021 0.96296 0.99159 0.97758 1.70163 1.27601 1.11918 1.42518 0.86622 0.80461 0.80845 0.81452 1.19710 1.21777 1.21489 1.20737 0.89349 1.00015 0.86314 1.22184 0.99203 0.99373 0.93072 0.92502 1.21551 0.95487 1.00934 0.97328 1.21901 0.95925 1.01140 0.98053 1.21702 0.98667 0.99149 0.82134 1.48406 1.14343 1.57030 1.14969 1.20699 0.86478 0.77657 0.86017 1.21930 0.94919 1.03510 1.02808 1.90738 1.81453 1.50896 1.19028 1.21725 0.78237 1.00574 0.98779 0.92951 0.93809 0.93173 0.92760 0.93107 0.93227 0.91840 0.94123 0.95255 0.93838 0.95621 0.89681 0.92012 0.92174 0.91392 0.91909 0.91645 0.90371 0.89850 0.89465 0.89889 0.87226 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.15 0.37 -1.76 16 2 C -0.12 -1.97 5.93 -26.74 -0.16 -2.13 16 3 C -0.13 -2.64 5.54 -26.73 -0.15 -2.79 16 4 C 0.15 3.18 5.69 -4.04 -0.02 3.15 16 5 N -0.58 -14.08 2.23 -173.24 -0.39 -14.46 16 6 C -0.26 -6.89 8.04 -15.06 -0.12 -7.01 16 7 H 0.06 1.68 7.96 -52.49 -0.42 1.27 16 8 C 0.02 0.50 4.72 -17.43 -0.08 0.42 16 9 N -0.88 -24.79 11.93 55.49 0.66 -24.13 16 10 Si 0.88 21.85 29.63 -169.99 -5.04 16.81 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.16 3.62 4.70 -4.05 -0.02 3.60 16 15 C -0.12 -2.17 2.53 -90.51 -0.23 -2.40 16 16 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 17 C -0.11 -1.70 5.17 -26.69 -0.14 -1.83 16 18 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 19 C 0.11 1.27 6.34 -3.70 -0.02 1.25 16 20 N -0.61 -10.10 2.97 -172.75 -0.51 -10.62 16 21 C 0.50 8.58 7.81 -10.99 -0.09 8.49 16 22 C -0.17 -1.89 8.67 36.01 0.31 -1.58 16 23 O -0.54 -12.06 16.50 5.56 0.09 -11.97 16 24 C 0.13 2.57 5.20 -3.71 -0.02 2.55 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.04 0.88 8.04 -51.93 -0.42 0.47 16 33 H 0.03 0.58 7.98 -51.93 -0.41 0.16 16 34 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.09 2.13 5.80 -51.93 -0.30 1.83 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 43 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 44 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 45 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 46 H 0.11 2.66 5.95 -51.93 -0.31 2.35 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -30.88 366.65 -9.06 -39.93 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.87 Total: 0.65 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.53 Total: -1.74 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.24 Total: -49.21 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.88 -9.06 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208981762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.881 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds