Wall clock time and date at job start Tue Mar 31 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47005 * 2 1 4 4 C 1.53001 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47049 * 179.97438 * 4 3 2 6 6 C 1.36930 * 119.99975 * 275.37110 * 5 4 3 7 7 H 1.08000 * 120.00661 * 321.54180 * 6 5 4 8 8 C 1.38817 * 119.99889 * 141.54106 * 6 5 4 9 9 N 1.31620 * 119.99872 * 339.20193 * 8 6 5 10 10 Si 1.86797 * 120.00261 * 159.20544 * 8 6 5 11 11 H 1.48496 * 109.47545 * 89.99813 * 10 8 6 12 12 H 1.48499 * 109.47213 * 209.99949 * 10 8 6 13 13 H 1.48504 * 109.46919 * 329.99465 * 10 8 6 14 14 C 1.46504 * 119.99985 * 95.37756 * 5 4 3 15 15 C 1.53003 * 109.47244 * 89.99586 * 14 5 4 16 16 H 1.09007 * 109.49274 * 54.99741 * 15 14 5 17 17 C 1.53036 * 109.49867 * 175.06431 * 15 14 5 18 18 C 1.53031 * 109.53941 * 181.31836 * 17 15 14 19 19 C 1.53201 * 109.31376 * 298.63604 * 18 17 15 20 20 N 1.46921 * 108.77497 * 54.63512 * 19 18 17 21 21 C 1.34776 * 120.63431 * 126.39245 * 20 19 18 22 22 C 1.50700 * 119.99660 * 359.97438 * 21 20 19 23 23 O 1.21275 * 120.00075 * 180.02562 * 21 20 19 24 24 C 1.46940 * 118.76405 * 306.41220 * 20 19 18 25 25 H 1.08999 * 109.47207 * 300.00167 * 1 2 3 26 26 H 1.09005 * 109.46883 * 59.99923 * 1 2 3 27 27 H 1.08999 * 109.47515 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46984 * 119.99933 * 2 1 3 29 29 H 1.08999 * 109.47207 * 239.99833 * 2 1 3 30 30 H 1.08996 * 109.47194 * 299.99804 * 3 2 1 31 31 H 1.08999 * 109.47275 * 59.99874 * 3 2 1 32 32 H 1.09005 * 109.46883 * 300.00077 * 4 3 2 33 33 H 1.08999 * 109.47207 * 59.99833 * 4 3 2 34 34 H 0.96994 * 120.00000 * 180.02562 * 9 8 6 35 35 H 1.08990 * 109.47076 * 209.99721 * 14 5 4 36 36 H 1.09002 * 109.46575 * 329.99653 * 14 5 4 37 37 H 1.09004 * 109.45912 * 301.34039 * 17 15 14 38 38 H 1.09001 * 109.45760 * 61.30843 * 17 15 14 39 39 H 1.08998 * 109.50124 * 58.58519 * 18 17 15 40 40 H 1.09001 * 109.50440 * 178.68694 * 18 17 15 41 41 H 1.09005 * 109.58594 * 174.42296 * 19 18 17 42 42 H 1.08999 * 109.58284 * 294.84507 * 19 18 17 43 43 H 1.09000 * 109.47131 * 60.00310 * 22 21 20 44 44 H 1.08999 * 109.47209 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47352 * 300.00696 * 22 21 20 46 46 H 1.09000 * 109.56055 * 293.78664 * 24 20 19 47 47 H 1.09001 * 109.61444 * 173.35593 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1824 3.5055 -1.1810 7 1 4.5337 2.9946 -2.0652 8 6 3.8564 4.8535 -1.2417 9 7 3.0648 5.3808 -0.3320 10 14 4.5413 5.9191 -2.6146 11 1 3.6094 5.8966 -3.7706 12 1 4.6941 7.3142 -2.1292 13 1 5.8650 5.3938 -3.0356 14 6 4.4141 3.4755 1.2630 15 6 5.8920 3.2235 1.5684 16 1 6.4988 3.5513 0.7243 17 6 6.2951 4.0045 2.8212 18 6 7.7811 3.7793 3.1087 19 6 8.0270 2.2894 3.3677 20 7 7.5094 1.5197 2.2283 21 6 8.2973 0.6397 1.5792 22 6 9.7243 0.4383 2.0201 23 8 7.8583 0.0108 0.6399 24 6 6.1165 1.7273 1.8090 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9329 0.9288 0.8909 33 1 3.9337 0.9285 -0.8891 34 1 2.8368 6.3226 -0.3746 35 1 4.2378 4.5479 1.1806 36 1 3.8021 3.0673 2.0674 37 1 6.1132 5.0672 2.6608 38 1 5.7047 3.6591 3.6700 39 1 8.3707 4.1014 2.2504 40 1 8.0730 4.3542 3.9875 41 1 9.0966 2.1089 3.4750 42 1 7.5101 1.9867 4.2783 43 1 9.7398 0.0931 3.0539 44 1 10.2004 -0.3054 1.3811 45 1 10.2647 1.3818 1.9441 46 1 5.4437 1.3782 2.5924 47 1 5.9255 1.1764 0.8881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208981764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:03 Heat of formation + Delta-G solvation = -42.959141 kcal Electronic energy + Delta-G solvation = -23829.015437 eV Core-core repulsion = 20625.318474 eV Total energy + Delta-G solvation = -3203.696963 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86760 -37.45292 -36.01969 -34.08240 -32.74477 -31.55281 -30.70144 -29.58833 -27.72537 -25.47626 -24.78721 -23.88294 -22.03556 -20.84344 -20.21400 -19.58448 -18.63109 -16.86170 -16.47559 -15.64337 -15.19922 -14.76674 -14.69974 -14.26930 -14.12294 -13.57610 -13.45528 -13.33929 -13.04309 -12.87816 -12.66664 -12.47899 -12.11988 -12.03591 -11.91367 -11.58983 -11.32055 -11.08171 -10.87040 -10.74558 -10.65795 -10.52763 -10.33638 -10.27134 -10.10282 -10.03271 -9.73045 -9.64888 -9.52823 -9.38104 -8.44125 -8.29237 -6.46770 -5.72826 -3.29898 2.86018 3.29629 3.38033 3.45515 3.50416 4.52886 4.72336 4.89635 5.09083 5.18903 5.21447 5.34497 5.36486 5.41107 5.54218 5.54685 5.58116 5.67231 5.75031 5.80852 5.86798 5.91366 6.06013 6.15047 6.21187 6.28552 6.29716 6.39296 6.45582 6.49019 6.54801 6.57697 6.63603 6.74735 6.82452 6.83508 7.01540 7.20097 7.25909 7.39952 7.67479 7.72222 7.89807 8.43243 8.60300 9.26697 9.88586 10.48205 11.26986 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.006444 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.534909 B = 4344.041738 C = 5684.120236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.132 4.132 4 C 0.146 3.854 5 N -0.583 5.583 6 C -0.252 4.252 7 H 0.058 0.942 8 C 0.013 3.987 9 N -0.888 5.888 10 Si 0.891 3.109 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.158 3.842 15 C -0.118 4.118 16 H 0.071 0.929 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.108 3.892 20 N -0.612 5.612 21 C 0.506 3.494 22 C -0.172 4.172 23 O -0.547 6.547 24 C 0.120 3.880 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.252 0.748 35 H 0.096 0.904 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.834 -5.848 9.979 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.172 4.172 4 C 0.020 3.980 5 N -0.302 5.302 6 C -0.382 4.382 7 H 0.075 0.925 8 C -0.187 4.187 9 N -0.531 5.531 10 Si 0.721 3.279 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.204 1.204 14 C 0.030 3.970 15 C -0.140 4.140 16 H 0.090 0.910 17 C -0.151 4.151 18 C -0.172 4.172 19 C -0.015 4.015 20 N -0.345 5.345 21 C 0.294 3.706 22 C -0.232 4.232 23 O -0.424 6.424 24 C -0.001 4.001 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.537 -6.026 9.487 13.532 hybrid contribution 0.285 0.820 -0.577 1.042 sum 7.822 -5.206 8.910 12.949 Atomic orbital electron populations 1.21756 0.96885 1.00282 1.01617 1.21543 0.95002 0.98815 1.00838 1.22143 0.99242 0.93679 1.02093 1.21012 0.91354 0.87577 0.98091 1.43786 1.73438 1.09826 1.03194 1.18996 1.37519 0.92314 0.89370 0.92483 1.25145 0.96945 0.99067 0.97540 1.69990 1.34081 1.12537 1.36504 0.86486 0.79381 0.79871 0.82188 1.21332 1.21616 1.20418 1.20871 0.88169 1.01569 0.86350 1.22218 1.02478 0.92777 0.96542 0.91007 1.21522 0.94188 1.00950 0.98435 1.21922 0.98511 0.95092 1.01711 1.21716 0.99130 0.91897 0.88736 1.48310 1.13581 1.40373 1.32254 1.20722 0.88117 0.79254 0.82515 1.21927 0.93821 1.04090 1.03340 1.90719 1.75751 1.47542 1.28427 1.21885 0.79236 0.98178 1.00808 0.93162 0.92980 0.93807 0.93067 0.92745 0.91908 0.93110 0.94675 0.94477 0.93755 0.88646 0.95931 0.91669 0.92470 0.91691 0.91343 0.90286 0.91657 0.89831 0.89386 0.89690 0.92827 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.68 5.51 -26.73 -0.15 -2.83 16 4 C 0.15 3.16 4.64 -4.04 -0.02 3.14 16 5 N -0.58 -14.25 2.27 -173.23 -0.39 -14.64 16 6 C -0.25 -6.88 9.45 -15.06 -0.14 -7.02 16 7 H 0.06 1.60 7.91 -52.49 -0.42 1.19 16 8 C 0.01 0.35 4.96 -17.43 -0.09 0.27 16 9 N -0.89 -25.11 11.50 55.49 0.64 -24.47 16 10 Si 0.89 21.72 29.60 -169.99 -5.03 16.68 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.16 3.53 4.76 -4.04 -0.02 3.51 16 15 C -0.12 -2.25 2.54 -90.50 -0.23 -2.48 16 16 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 17 C -0.11 -1.71 5.17 -26.70 -0.14 -1.84 16 18 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 19 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 20 N -0.61 -9.27 2.97 -172.75 -0.51 -9.78 16 21 C 0.51 8.03 7.81 -10.99 -0.09 7.95 16 22 C -0.17 -1.76 8.67 36.01 0.31 -1.45 16 23 O -0.55 -11.33 16.50 5.56 0.09 -11.23 16 24 C 0.12 2.15 4.45 -3.70 -0.02 2.14 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.71 6.29 -51.93 -0.33 0.38 16 33 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.10 2.44 5.56 -51.93 -0.29 2.15 16 36 H 0.02 0.48 8.07 -51.93 -0.42 0.07 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 44 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 45 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 46 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 47 H 0.10 2.10 5.35 -51.93 -0.28 1.82 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -30.99 363.60 -9.02 -40.01 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.74 Total: 1.16 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.55 Total: -3.21 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.27 Total: -48.89 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.99 -9.02 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208981764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.947 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds