Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 C 1.52999 * 109.47124 * 180.90730 * 3 2 1 5 5 H 1.09000 * 109.46912 * 54.75320 * 4 3 2 6 6 C 1.53000 * 109.47093 * 294.75413 * 4 3 2 7 7 C 1.53004 * 109.46583 * 301.22900 * 6 4 3 8 8 C 1.50693 * 109.47080 * 174.75043 * 4 3 2 9 9 O 1.21289 * 120.00327 * 359.97438 * 8 4 3 10 10 N 1.34773 * 120.00293 * 180.02562 * 8 4 3 11 11 C 1.46499 * 120.00564 * 180.02562 * 10 8 4 12 12 H 1.08999 * 110.88499 * 37.42037 * 11 10 8 13 13 C 1.54910 * 111.00116 * 273.54507 * 11 10 8 14 14 N 1.47428 * 104.83406 * 204.87391 * 13 11 10 15 15 C 1.36930 * 125.65093 * 203.86154 * 14 13 11 16 16 H 1.08002 * 119.99820 * 180.02562 * 15 14 13 17 17 C 1.38814 * 120.00088 * 0.02665 * 15 14 13 18 18 N 1.31617 * 120.00020 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99815 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47170 * 60.00001 * 19 17 15 21 21 H 1.48506 * 109.46966 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47143 * 299.99637 * 19 17 15 23 23 C 1.47029 * 108.70089 * 24.12938 * 14 13 11 24 24 C 1.54324 * 107.26748 * 358.94044 * 23 14 13 25 25 H 1.08996 * 110.72156 * 96.17561 * 24 23 14 26 26 C 1.53004 * 110.86974 * 219.37247 * 24 23 14 27 27 H 1.09001 * 109.47206 * 300.00222 * 1 2 3 28 28 H 1.08998 * 109.47066 * 60.00573 * 1 2 3 29 29 H 1.09007 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47206 * 239.99778 * 2 1 3 31 31 H 1.09000 * 109.46718 * 119.99838 * 2 1 3 32 32 H 1.08996 * 109.47234 * 60.90233 * 3 2 1 33 33 H 1.09009 * 109.46729 * 300.90785 * 3 2 1 34 34 H 1.08992 * 109.47374 * 61.22451 * 6 4 3 35 35 H 1.08998 * 109.46864 * 181.23266 * 6 4 3 36 36 H 1.09007 * 109.46692 * 185.89035 * 7 6 4 37 37 H 1.09002 * 109.47236 * 305.88471 * 7 6 4 38 38 H 1.08991 * 109.47496 * 65.89092 * 7 6 4 39 39 H 0.97003 * 120.00039 * 359.97438 * 10 8 4 40 40 H 1.09001 * 110.36767 * 86.03936 * 13 11 10 41 41 H 1.09004 * 110.36723 * 323.71226 * 13 11 10 42 42 H 0.96991 * 120.00053 * 179.97438 * 18 17 15 43 43 H 1.08993 * 109.88134 * 118.35862 * 23 14 13 44 44 H 1.08994 * 109.88093 * 239.52550 * 23 14 13 45 45 H 1.08997 * 109.47268 * 173.61263 * 26 24 23 46 46 H 1.09005 * 109.47095 * 293.61152 * 26 24 23 47 47 H 1.08994 * 109.47306 * 53.61316 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5698 1.4426 -0.0228 5 1 3.9205 0.8539 -0.8706 6 6 4.0993 0.8317 1.2761 7 6 3.5818 1.6399 2.4677 8 6 4.0702 2.8580 -0.1528 9 8 3.2809 3.7765 -0.2210 10 7 5.3947 3.1035 -0.1944 11 6 5.8812 4.4796 -0.3202 12 1 5.2570 5.1662 0.2516 13 6 5.9591 4.9072 -1.8071 14 7 6.9767 5.9734 -1.8405 15 6 7.0741 6.9542 -2.7910 16 1 7.8596 7.6926 -2.7264 17 6 6.1634 6.9993 -3.8376 18 7 5.2065 6.0991 -3.9166 19 14 6.2960 8.3378 -5.1339 20 1 7.6148 8.2434 -5.8098 21 1 5.2126 8.1663 -6.1351 22 1 6.1653 9.6681 -4.4870 23 6 7.8735 5.8053 -0.6876 24 6 7.3672 4.5869 0.1129 25 1 7.9160 3.6874 -0.1656 26 6 7.4754 4.8404 1.6179 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6900 1.9516 0.8979 33 1 1.6634 1.9610 -0.8818 34 1 3.7553 -0.1992 1.3595 35 1 5.1891 0.8517 1.2693 36 1 4.0413 1.2703 3.3845 37 1 3.8365 2.6911 2.3319 38 1 2.4992 1.5342 2.5358 39 1 6.0260 2.3690 -0.1402 40 1 4.9957 5.2917 -2.1422 41 1 6.2697 4.0667 -2.4278 42 1 4.5699 6.1309 -4.6477 43 1 8.8914 5.6250 -1.0330 44 1 7.8446 6.6976 -0.0623 45 1 7.0094 4.0171 2.1594 46 1 8.5259 4.9121 1.8997 47 1 6.9680 5.7723 1.8669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209799098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = -62.775776 kcal Electronic energy + Delta-G solvation = -23519.325864 eV Core-core repulsion = 20314.769587 eV Total energy + Delta-G solvation = -3204.556277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23535 -39.38508 -37.24264 -35.64804 -34.40610 -33.53723 -32.17149 -30.02038 -29.28201 -27.43089 -26.14663 -25.11373 -23.80297 -22.44379 -21.59621 -21.31846 -19.99813 -18.94393 -17.71563 -17.41986 -17.02742 -16.80731 -16.03479 -15.67631 -15.42228 -14.77564 -14.54096 -14.49386 -14.41022 -14.19898 -13.98333 -13.82496 -13.52983 -13.38066 -13.06655 -12.86924 -12.82989 -12.70280 -12.59094 -12.27649 -12.12379 -12.00375 -11.85203 -11.81701 -11.80143 -11.66925 -11.47613 -11.37740 -11.26380 -10.77806 -10.60326 -9.93406 -8.92293 -7.78808 -5.26031 1.42518 1.47267 1.53690 1.78010 2.25200 2.48902 3.30307 3.62534 3.68161 3.79331 3.88138 3.94237 4.03289 4.10898 4.25839 4.30906 4.41058 4.46178 4.53724 4.61912 4.65827 4.69545 4.78638 4.84449 4.87822 4.94788 5.02954 5.04173 5.07983 5.13408 5.19290 5.22234 5.23153 5.29037 5.34333 5.41554 5.44057 5.46189 5.48743 5.60067 5.67832 5.81177 6.26652 6.70366 7.05166 7.42745 7.75060 8.37736 9.21512 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.004561 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.521851 B = 6138.156545 C = 7425.181569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.101 4.101 4 C -0.101 4.101 5 H 0.111 0.889 6 C -0.106 4.106 7 C -0.156 4.156 8 C 0.510 3.490 9 O -0.591 6.591 10 N -0.702 5.702 11 C 0.139 3.861 12 H 0.059 0.941 13 C 0.158 3.842 14 N -0.628 5.628 15 C -0.244 4.244 16 H 0.086 0.914 17 C -0.070 4.070 18 N -0.950 5.950 19 Si 0.983 3.017 20 H -0.272 1.272 21 H -0.296 1.296 22 H -0.276 1.276 23 C 0.132 3.868 24 C -0.092 4.092 25 H 0.098 0.902 26 C -0.128 4.128 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.058 0.942 41 H -0.011 1.011 42 H 0.244 0.756 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -16.090 13.774 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.139 4.139 4 C -0.122 4.122 5 H 0.129 0.871 6 C -0.144 4.144 7 C -0.213 4.213 8 C 0.298 3.702 9 O -0.471 6.471 10 N -0.354 5.354 11 C 0.032 3.968 12 H 0.078 0.922 13 C 0.031 3.969 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.104 0.896 17 C -0.263 4.263 18 N -0.600 5.600 19 Si 0.811 3.189 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.202 1.202 23 C 0.007 3.993 24 C -0.112 4.112 25 H 0.116 0.884 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.006 0.994 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.162 -15.358 13.560 20.521 hybrid contribution 0.019 0.961 -1.313 1.628 sum -1.143 -14.397 12.247 18.936 Atomic orbital electron populations 1.21785 0.95864 1.02146 1.01386 1.21552 0.95941 0.94685 1.03208 1.21437 0.92751 0.98110 1.01651 1.21481 0.97585 0.90866 1.02312 0.87058 1.21562 1.01386 1.00603 0.90838 1.21854 1.01673 0.98942 0.98849 1.21443 0.81993 0.92516 0.74232 1.90703 1.56439 1.48551 1.51381 1.45718 1.07231 1.08358 1.74044 1.22072 0.94903 0.83293 0.96538 0.92248 1.21859 0.94306 0.88919 0.91771 1.44712 1.32098 1.31334 1.27264 1.19482 1.11059 1.04998 1.01709 0.89598 1.25746 0.97742 1.01393 1.01389 1.70139 1.19035 1.37685 1.33094 0.85082 0.77085 0.78542 0.78217 1.19793 1.22195 1.20169 1.21610 0.93432 0.96132 0.88114 1.22361 0.93259 0.98665 0.96877 0.88384 1.21685 1.02954 1.01705 0.92227 0.92930 0.93922 0.91233 0.91343 0.89728 0.92116 0.94458 0.87944 0.90022 0.90689 0.95517 0.92419 0.75041 0.92406 0.99355 0.94632 0.94890 0.95259 0.91008 0.90264 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.12 -1.95 5.67 30.59 0.17 -1.77 16 3 C -0.10 -2.48 3.80 30.59 0.12 -2.36 16 4 C -0.10 -2.33 2.50 -11.54 -0.03 -2.36 16 5 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 6 C -0.11 -1.64 5.36 30.60 0.16 -1.48 16 7 C -0.16 -2.86 9.22 71.98 0.66 -2.20 16 8 C 0.51 17.51 5.85 87.66 0.51 18.02 16 9 O -0.59 -27.29 15.66 -3.06 -0.05 -27.33 16 10 N -0.70 -22.27 5.12 -435.98 -2.23 -24.50 16 11 C 0.14 5.57 2.76 46.38 0.13 5.70 16 12 H 0.06 2.74 7.64 -2.39 -0.02 2.72 16 13 C 0.16 8.42 5.57 86.85 0.48 8.90 16 14 N -0.63 -33.99 3.39 -691.97 -2.35 -36.34 16 15 C -0.24 -14.30 10.27 84.04 0.86 -13.44 16 16 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 17 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 18 N -0.95 -60.99 10.09 21.65 0.22 -60.77 16 19 Si 0.98 47.78 29.55 68.60 2.03 49.81 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C 0.13 5.46 6.84 86.73 0.59 6.06 16 24 C -0.09 -2.96 3.16 -9.61 -0.03 -2.99 16 25 H 0.10 2.69 8.00 -2.39 -0.02 2.68 16 26 C -0.13 -3.13 9.17 71.98 0.66 -2.47 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.06 6.64 -2.39 -0.02 1.05 16 32 H 0.06 1.59 6.26 -2.39 -0.01 1.58 16 33 H 0.04 1.15 7.95 -2.38 -0.02 1.13 16 34 H 0.10 1.07 6.65 -2.39 -0.02 1.05 16 35 H 0.08 1.03 7.53 -2.39 -0.02 1.01 16 36 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.03 0.65 7.06 -2.39 -0.02 0.63 16 38 H 0.06 1.07 6.62 -2.39 -0.02 1.05 16 39 H 0.41 9.59 7.92 -92.71 -0.73 8.86 16 40 H 0.06 3.72 5.89 -2.39 -0.01 3.71 16 41 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 42 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.03 1.20 7.78 -2.39 -0.02 1.18 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.04 1.19 8.07 -2.39 -0.02 1.17 16 Total: -1.00 -78.70 362.29 3.29 -75.41 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.19 Total: 19.75 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 5.48 Total: 3.99 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -4.36 Total: -121.61 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.33 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -78.70 3.29 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209799098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.632 kcal (2) G-P(sol) polarization free energy of solvation -78.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds