Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 C 1.53005 * 109.47269 * 185.20883 * 3 2 1 5 5 H 1.09000 * 109.46981 * 54.62754 * 4 3 2 6 6 C 1.52995 * 109.47015 * 294.62865 * 4 3 2 7 7 C 1.53005 * 109.47210 * 304.39227 * 6 4 3 8 8 C 1.50694 * 109.47030 * 174.62807 * 4 3 2 9 9 O 1.21282 * 120.00267 * 9.69931 * 8 4 3 10 10 N 1.34777 * 119.99969 * 189.70078 * 8 4 3 11 11 C 1.46925 * 120.63008 * 354.67536 * 10 8 4 12 12 C 1.52767 * 109.01011 * 233.58591 * 11 10 8 13 13 C 1.53038 * 109.38027 * 305.58708 * 12 11 10 14 14 C 1.53038 * 109.53999 * 61.23792 * 13 12 11 15 15 H 1.09001 * 109.49982 * 58.58657 * 14 13 12 16 16 N 1.46506 * 109.52522 * 178.66930 * 14 13 12 17 17 C 1.36939 * 119.99795 * 274.85722 * 16 14 13 18 18 H 1.08006 * 119.99941 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00167 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99404 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47154 * 89.99873 * 21 19 17 23 23 H 1.48507 * 109.47053 * 209.99640 * 21 19 17 24 24 H 1.48495 * 109.47192 * 329.99720 * 21 19 17 25 25 C 1.46927 * 120.63491 * 174.95208 * 10 8 4 26 26 H 1.09004 * 109.47292 * 300.00048 * 1 2 3 27 27 H 1.08998 * 109.47250 * 60.00493 * 1 2 3 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47180 * 239.99813 * 2 1 3 30 30 H 1.09002 * 109.47024 * 119.99956 * 2 1 3 31 31 H 1.09002 * 109.47595 * 65.20441 * 3 2 1 32 32 H 1.09001 * 109.47278 * 305.20621 * 3 2 1 33 33 H 1.09003 * 109.47190 * 64.38973 * 6 4 3 34 34 H 1.08995 * 109.47453 * 184.39301 * 6 4 3 35 35 H 1.09009 * 109.46813 * 65.55129 * 7 6 4 36 36 H 1.09001 * 109.47216 * 185.54788 * 7 6 4 37 37 H 1.08998 * 109.47100 * 305.55580 * 7 6 4 38 38 H 1.09003 * 109.58533 * 353.41331 * 11 10 8 39 39 H 1.08995 * 109.59283 * 113.84272 * 11 10 8 40 40 H 1.08996 * 109.56571 * 185.54976 * 12 11 10 41 41 H 1.09004 * 109.38640 * 65.51231 * 12 11 10 42 42 H 1.09000 * 109.45882 * 301.21830 * 13 12 11 43 43 H 1.08995 * 109.44809 * 181.25557 * 13 12 11 44 44 H 0.96994 * 120.00384 * 94.85206 * 16 14 13 45 45 H 0.97006 * 119.99195 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58919 * 246.15525 * 25 10 8 47 47 H 1.08999 * 109.58305 * 6.44270 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5643 1.4445 -0.1310 5 1 3.8539 0.8757 -1.0146 6 6 4.1839 0.8047 1.1130 7 6 3.6899 1.5363 2.3627 8 6 4.0552 2.8631 -0.2636 9 8 3.2930 3.7883 -0.0793 10 7 5.3412 3.1037 -0.5871 11 6 6.3040 1.9996 -0.6995 12 6 7.5104 2.2989 0.1887 13 6 8.0816 3.6710 -0.1760 14 6 7.0216 4.7478 0.0669 15 1 6.7143 4.7265 1.1125 16 7 7.5791 6.0645 -0.2522 17 6 8.2980 6.7503 0.6902 18 1 8.4536 6.3207 1.6688 19 6 8.8258 7.9981 0.3881 20 7 8.6356 8.5218 -0.8044 21 14 9.8058 8.9339 1.6738 22 1 11.2420 8.5741 1.5600 23 1 9.6423 10.3936 1.4551 24 1 9.3121 8.5779 3.0283 25 6 5.8085 4.4756 -0.8282 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7547 1.9287 0.9329 32 1 1.6024 1.9825 -0.8397 33 1 3.8911 -0.2440 1.1664 34 1 5.2700 0.8761 1.0558 35 1 2.6165 1.3819 2.4736 36 1 4.2056 1.1459 3.2400 37 1 3.8953 2.6022 2.2647 38 1 5.8346 1.0709 -0.3749 39 1 6.6310 1.9037 -1.7349 40 1 8.2733 1.5353 0.0376 41 1 7.1990 2.3004 1.2333 42 1 8.3704 3.6764 -1.2271 43 1 8.9558 3.8761 0.4418 44 1 7.4391 6.4505 -1.1310 45 1 9.0048 9.3937 -1.0156 46 1 6.0942 4.5859 -1.8743 47 1 5.0113 5.1801 -0.5909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210370173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = -47.473700 kcal Electronic energy + Delta-G solvation = -23506.000583 eV Core-core repulsion = 20302.107854 eV Total energy + Delta-G solvation = -3203.892729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43506 -37.66285 -36.32846 -34.52208 -33.07417 -32.07928 -31.21149 -29.10013 -28.27044 -25.72286 -24.86542 -23.65749 -22.70728 -22.00125 -20.71318 -19.72781 -18.42015 -17.17777 -16.86959 -16.04666 -15.83167 -15.20574 -14.70413 -14.25661 -14.16198 -13.99764 -13.71574 -13.56889 -13.31089 -13.14089 -12.93321 -12.61252 -12.49073 -12.33976 -12.06525 -11.87818 -11.38840 -11.17470 -11.08938 -10.99968 -10.90286 -10.88016 -10.74399 -10.59652 -10.51079 -10.39002 -10.30867 -10.05737 -9.71362 -9.37853 -8.90371 -8.33762 -6.97921 -5.77110 -3.06536 2.82373 3.18068 3.43653 3.49063 3.50784 4.43480 4.55217 4.59314 4.71426 4.89554 4.96332 4.98816 5.05475 5.14582 5.18500 5.34112 5.40907 5.47469 5.49307 5.56160 5.59464 5.64197 5.66126 5.72625 5.77390 5.78522 5.83684 5.88491 5.94436 6.01013 6.06946 6.13821 6.16587 6.18407 6.28610 6.35071 6.41220 6.57058 6.75070 6.90451 7.06303 7.65752 7.69791 8.38951 8.42199 9.52113 10.07764 10.42865 11.45471 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.003614 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.738447 B = 7745.205686 C = 7923.783652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.124 4.124 7 C -0.156 4.156 8 C 0.518 3.482 9 O -0.541 6.541 10 N -0.605 5.605 11 C 0.098 3.902 12 C -0.134 4.134 13 C -0.136 4.136 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.105 3.895 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.166 -21.145 0.754 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.128 4.128 5 H 0.109 0.891 6 C -0.161 4.161 7 C -0.213 4.213 8 C 0.306 3.694 9 O -0.418 6.418 10 N -0.339 5.339 11 C -0.024 4.024 12 C -0.173 4.173 13 C -0.177 4.177 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.018 4.018 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.499 -20.537 0.998 23.086 hybrid contribution 0.788 0.689 0.274 1.082 sum -9.711 -19.848 1.273 22.133 Atomic orbital electron populations 1.21764 0.95886 1.01319 1.02002 1.21571 0.95882 0.96807 1.01894 1.21493 0.92399 0.96482 1.03748 1.21403 0.97584 0.93742 1.00112 0.89085 1.21756 1.00932 0.99783 0.93648 1.21854 1.01344 1.01210 0.96942 1.20571 0.81599 0.91247 0.76022 1.90690 1.55022 1.46129 1.50004 1.48099 1.08564 1.08181 1.69009 1.21895 0.90454 0.89747 1.00340 1.21864 0.96726 0.98988 0.99691 1.22269 1.00517 0.93490 1.01432 1.20464 0.90287 0.86557 0.96861 0.93299 1.42316 1.62985 1.15525 1.15414 1.19206 1.25042 0.98606 0.94052 0.91194 1.24748 1.01511 0.97695 0.96926 1.69667 1.50078 1.18316 1.19968 0.86185 0.79915 0.79287 0.80781 1.21732 1.21741 1.20747 1.21979 0.98348 0.81908 0.99521 0.92705 0.92728 0.92946 0.92170 0.91827 0.90598 0.91478 0.90866 0.90532 0.92224 0.92667 0.92209 0.89362 0.91660 0.91363 0.91878 0.92521 0.91630 0.78219 0.93474 0.91875 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.15 0.37 -0.77 16 2 C -0.12 -0.97 5.57 -26.74 -0.15 -1.12 16 3 C -0.10 -1.08 3.68 -26.73 -0.10 -1.18 16 4 C -0.11 -1.13 1.66 -91.77 -0.15 -1.29 16 5 H 0.09 0.81 7.68 -51.93 -0.40 0.41 16 6 C -0.12 -1.12 4.91 -26.73 -0.13 -1.25 16 7 C -0.16 -1.64 9.15 37.16 0.34 -1.30 16 8 C 0.52 7.80 5.86 -10.99 -0.06 7.74 16 9 O -0.54 -10.36 15.44 5.56 0.09 -10.27 16 10 N -0.61 -8.98 2.98 -173.03 -0.52 -9.50 16 11 C 0.10 1.13 5.53 -3.93 -0.02 1.10 16 12 C -0.13 -1.69 5.97 -26.83 -0.16 -1.85 16 13 C -0.14 -2.33 5.47 -26.69 -0.15 -2.48 16 14 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 15 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 16 N -0.72 -18.21 5.12 -53.30 -0.27 -18.48 16 17 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.11 1.91 5.92 -3.71 -0.02 1.89 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 6.94 -51.93 -0.36 0.09 16 31 H 0.08 0.88 6.16 -51.93 -0.32 0.56 16 32 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.07 0.52 6.92 -51.93 -0.36 0.16 16 34 H 0.08 0.69 5.29 -51.93 -0.27 0.41 16 35 H 0.06 0.58 6.57 -51.92 -0.34 0.24 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.81 7.19 -51.93 -0.37 0.44 16 38 H 0.09 0.78 4.08 -51.93 -0.21 0.57 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.90 7.00 -51.93 -0.36 1.53 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -31.81 356.94 -8.66 -40.47 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -8.36 Total: 6.97 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.68 Total: -4.53 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.06 Total: -55.56 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.81 -8.66 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210370173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.004 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds