Wall clock time and date at job start Tue Mar 31 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 C 1.53005 * 109.47269 * 185.20883 * 3 2 1 5 5 H 1.09000 * 109.46981 * 54.62754 * 4 3 2 6 6 C 1.52995 * 109.47015 * 294.62865 * 4 3 2 7 7 C 1.53005 * 109.47210 * 304.39227 * 6 4 3 8 8 C 1.50694 * 109.47030 * 174.62807 * 4 3 2 9 9 O 1.21282 * 120.00267 * 9.69931 * 8 4 3 10 10 N 1.34777 * 119.99969 * 189.70078 * 8 4 3 11 11 C 1.46925 * 120.63008 * 354.67536 * 10 8 4 12 12 C 1.52767 * 109.01011 * 233.58591 * 11 10 8 13 13 C 1.53038 * 109.38027 * 305.58708 * 12 11 10 14 14 C 1.53038 * 109.53999 * 61.23792 * 13 12 11 15 15 H 1.09001 * 109.49982 * 58.58657 * 14 13 12 16 16 N 1.46506 * 109.52522 * 178.66930 * 14 13 12 17 17 C 1.36939 * 119.99795 * 274.85722 * 16 14 13 18 18 H 1.08006 * 119.99941 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00167 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99404 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47154 * 89.99873 * 21 19 17 23 23 H 1.48507 * 109.47053 * 209.99640 * 21 19 17 24 24 H 1.48495 * 109.47192 * 329.99720 * 21 19 17 25 25 C 1.46927 * 120.63491 * 174.95208 * 10 8 4 26 26 H 1.09004 * 109.47292 * 300.00048 * 1 2 3 27 27 H 1.08998 * 109.47250 * 60.00493 * 1 2 3 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47180 * 239.99813 * 2 1 3 30 30 H 1.09002 * 109.47024 * 119.99956 * 2 1 3 31 31 H 1.09002 * 109.47595 * 65.20441 * 3 2 1 32 32 H 1.09001 * 109.47278 * 305.20621 * 3 2 1 33 33 H 1.09003 * 109.47190 * 64.38973 * 6 4 3 34 34 H 1.08995 * 109.47453 * 184.39301 * 6 4 3 35 35 H 1.09009 * 109.46813 * 65.55129 * 7 6 4 36 36 H 1.09001 * 109.47216 * 185.54788 * 7 6 4 37 37 H 1.08998 * 109.47100 * 305.55580 * 7 6 4 38 38 H 1.09003 * 109.58533 * 353.41331 * 11 10 8 39 39 H 1.08995 * 109.59283 * 113.84272 * 11 10 8 40 40 H 1.08996 * 109.56571 * 185.54976 * 12 11 10 41 41 H 1.09004 * 109.38640 * 65.51231 * 12 11 10 42 42 H 1.09000 * 109.45882 * 301.21830 * 13 12 11 43 43 H 1.08995 * 109.44809 * 181.25557 * 13 12 11 44 44 H 0.96994 * 120.00384 * 94.85206 * 16 14 13 45 45 H 0.97006 * 119.99195 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.58919 * 246.15525 * 25 10 8 47 47 H 1.08999 * 109.58305 * 6.44270 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5643 1.4445 -0.1310 5 1 3.8539 0.8757 -1.0146 6 6 4.1839 0.8047 1.1130 7 6 3.6899 1.5363 2.3627 8 6 4.0552 2.8631 -0.2636 9 8 3.2930 3.7883 -0.0793 10 7 5.3412 3.1037 -0.5871 11 6 6.3040 1.9996 -0.6995 12 6 7.5104 2.2989 0.1887 13 6 8.0816 3.6710 -0.1760 14 6 7.0216 4.7478 0.0669 15 1 6.7143 4.7265 1.1125 16 7 7.5791 6.0645 -0.2522 17 6 8.2980 6.7503 0.6902 18 1 8.4536 6.3207 1.6688 19 6 8.8258 7.9981 0.3881 20 7 8.6356 8.5218 -0.8044 21 14 9.8058 8.9339 1.6738 22 1 11.2420 8.5741 1.5600 23 1 9.6423 10.3936 1.4551 24 1 9.3121 8.5779 3.0283 25 6 5.8085 4.4756 -0.8282 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7547 1.9287 0.9329 32 1 1.6024 1.9825 -0.8397 33 1 3.8911 -0.2440 1.1664 34 1 5.2700 0.8761 1.0558 35 1 2.6165 1.3819 2.4736 36 1 4.2056 1.1459 3.2400 37 1 3.8953 2.6022 2.2647 38 1 5.8346 1.0709 -0.3749 39 1 6.6310 1.9037 -1.7349 40 1 8.2733 1.5353 0.0376 41 1 7.1990 2.3004 1.2333 42 1 8.3704 3.6764 -1.2271 43 1 8.9558 3.8761 0.4418 44 1 7.4391 6.4505 -1.1310 45 1 9.0048 9.3937 -1.0156 46 1 6.0942 4.5859 -1.8743 47 1 5.0113 5.1801 -0.5909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210370173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:31 Heat of formation + Delta-G solvation = -67.241876 kcal Electronic energy + Delta-G solvation = -23506.857796 eV Core-core repulsion = 20302.107854 eV Total energy + Delta-G solvation = -3204.749942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59891 -38.96751 -37.33439 -36.23472 -34.10226 -33.44780 -32.76965 -30.35636 -29.57346 -26.80476 -26.19892 -25.29750 -23.54697 -23.32680 -21.84214 -20.93873 -19.64069 -19.10968 -18.00611 -17.04595 -16.85500 -16.78791 -16.08046 -15.75630 -15.39088 -15.16664 -14.97150 -14.70289 -14.59555 -14.47375 -14.02579 -13.76725 -13.64556 -13.48522 -13.03229 -12.87475 -12.83136 -12.66350 -12.37230 -12.25464 -12.15990 -11.97595 -11.86796 -11.85506 -11.77425 -11.72921 -11.63748 -11.38358 -11.27984 -10.93126 -10.55762 -9.64760 -9.05271 -7.98122 -5.27842 1.44082 1.46385 1.54676 1.65528 1.99191 2.54173 3.34578 3.48412 3.76988 3.79419 3.91113 4.01522 4.06797 4.11844 4.24177 4.25191 4.31996 4.35198 4.40864 4.44115 4.58675 4.67352 4.73159 4.78436 4.78874 4.83489 4.87412 4.96731 5.02225 5.05813 5.12042 5.16755 5.18813 5.23672 5.29634 5.37619 5.42073 5.42818 5.46898 5.52711 5.57635 5.61875 6.23657 6.49627 7.21432 7.29262 8.02083 8.26706 9.25302 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.003614 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.738447 B = 7745.205686 C = 7923.783652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.102 4.102 4 C -0.098 4.098 5 H 0.123 0.877 6 C -0.119 4.119 7 C -0.156 4.156 8 C 0.510 3.490 9 O -0.594 6.594 10 N -0.605 5.605 11 C 0.095 3.905 12 C -0.125 4.125 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.027 0.973 16 N -0.736 5.736 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.283 1.283 23 H -0.295 1.295 24 H -0.272 1.272 25 C 0.117 3.883 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.018 0.982 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.067 0.933 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 -25.045 1.166 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.140 4.140 4 C -0.119 4.119 5 H 0.141 0.859 6 C -0.156 4.156 7 C -0.214 4.214 8 C 0.300 3.700 9 O -0.474 6.474 10 N -0.337 5.337 11 C -0.026 4.026 12 C -0.163 4.163 13 C -0.167 4.167 14 C 0.059 3.941 15 H 0.045 0.955 16 N -0.376 5.376 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.803 3.197 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.197 1.197 25 C -0.007 4.007 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.205 0.795 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.983 -24.518 1.431 26.511 hybrid contribution 0.553 1.888 0.167 1.974 sum -9.430 -22.630 1.598 24.568 Atomic orbital electron populations 1.21789 0.95999 1.02094 1.01372 1.21539 0.95790 0.94662 1.03356 1.21461 0.92446 0.98204 1.01839 1.21491 0.97499 0.90525 1.02393 0.85902 1.21809 1.01128 1.01171 0.91489 1.21848 1.01970 0.98861 0.98691 1.21569 0.81023 0.92909 0.74512 1.90667 1.56389 1.48232 1.52119 1.48207 1.09454 1.07408 1.68664 1.22236 0.89362 0.89647 1.01382 1.21832 0.98005 0.96686 0.99795 1.22057 0.98499 0.95109 1.01066 1.20615 0.91923 0.85607 0.95910 0.95525 1.42501 1.63181 1.17452 1.14502 1.19538 1.24340 0.98837 0.94461 0.91003 1.25573 1.03294 0.98827 0.99005 1.69824 1.51672 1.18536 1.21892 0.85136 0.78586 0.77378 0.78647 1.20942 1.22168 1.19715 1.21536 0.96230 0.83885 0.99045 0.93420 0.93436 0.91400 0.90540 0.90314 0.92617 0.93592 0.87213 0.89780 0.91888 0.91288 0.96313 0.85527 0.89879 0.87643 0.92050 0.92513 0.93616 0.79526 0.93938 0.91481 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.43 5.57 30.59 0.17 -1.26 16 3 C -0.10 -1.98 3.68 30.59 0.11 -1.87 16 4 C -0.10 -1.81 1.66 -11.54 -0.02 -1.83 16 5 H 0.12 1.57 7.68 -2.39 -0.02 1.55 16 6 C -0.12 -1.69 4.91 30.59 0.15 -1.53 16 7 C -0.16 -3.04 9.15 71.98 0.66 -2.38 16 8 C 0.51 15.22 5.86 87.66 0.51 15.73 16 9 O -0.59 -23.94 15.44 -3.04 -0.05 -23.98 16 10 N -0.60 -17.44 2.98 -819.73 -2.44 -19.88 16 11 C 0.09 1.81 5.53 86.22 0.48 2.29 16 12 C -0.12 -2.74 5.97 30.53 0.18 -2.56 16 13 C -0.13 -4.25 5.47 30.62 0.17 -4.08 16 14 C 0.17 7.02 2.92 45.07 0.13 7.15 16 15 H 0.03 1.21 8.08 -2.39 -0.02 1.20 16 16 N -0.74 -38.66 5.12 -322.55 -1.65 -40.31 16 17 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 20 N -0.97 -60.56 13.06 21.65 0.28 -60.27 16 21 Si 0.97 47.18 29.55 68.60 2.03 49.20 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 25 C 0.12 4.42 5.92 86.36 0.51 4.94 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.77 6.94 -2.39 -0.02 0.75 16 31 H 0.06 1.30 6.16 -2.39 -0.01 1.29 16 32 H 0.05 1.08 8.09 -2.39 -0.02 1.06 16 33 H 0.11 0.88 6.92 -2.39 -0.02 0.86 16 34 H 0.08 1.09 5.29 -2.39 -0.01 1.08 16 35 H 0.06 1.16 6.57 -2.38 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.02 0.50 7.19 -2.39 -0.02 0.48 16 38 H 0.13 1.52 4.08 -2.39 -0.01 1.51 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.37 20.91 7.80 -92.71 -0.72 20.19 16 45 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 46 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.06 2.50 7.00 -2.39 -0.02 2.48 16 Total: -1.00 -74.18 356.94 3.45 -70.73 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.21 Total: 28.07 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 5.07 Total: -3.56 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -3.81 Total: -120.47 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -74.18 3.45 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210370173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.486 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds