Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47440 * 2 1 4 4 C 1.52992 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47052 * 304.99625 * 4 3 2 6 6 C 1.52997 * 109.47517 * 64.99792 * 4 3 2 7 7 C 1.53004 * 109.47250 * 184.99626 * 4 3 2 8 8 C 1.50702 * 109.46977 * 174.99636 * 7 4 3 9 9 O 1.21280 * 120.00299 * 0.02562 * 8 7 4 10 10 N 1.34783 * 119.99463 * 179.97438 * 8 7 4 11 11 C 1.47428 * 125.64363 * 180.02562 * 10 8 7 12 12 C 1.54905 * 104.83005 * 204.09303 * 11 10 8 13 13 H 1.09004 * 111.00717 * 81.06589 * 12 11 10 14 14 C 1.52998 * 111.00757 * 204.91596 * 12 11 10 15 15 C 1.55162 * 101.58494 * 322.99378 * 12 11 10 16 16 H 1.08995 * 110.86872 * 277.06330 * 15 12 11 17 17 N 1.46499 * 110.72136 * 153.86398 * 15 12 11 18 18 C 1.36931 * 120.00122 * 160.02424 * 17 15 12 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47017 * 125.65073 * 359.97438 * 10 8 7 27 27 H 1.08997 * 109.47259 * 300.00392 * 1 2 3 28 28 H 1.09000 * 109.46998 * 60.00248 * 1 2 3 29 29 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47259 * 239.99608 * 2 1 3 31 31 H 1.09008 * 109.46948 * 119.99504 * 2 1 3 32 32 H 1.08997 * 109.47215 * 59.99581 * 3 2 1 33 33 H 1.09000 * 109.46823 * 299.99859 * 3 2 1 34 34 H 1.08997 * 109.47775 * 180.02562 * 6 4 3 35 35 H 1.09005 * 109.47093 * 299.99982 * 6 4 3 36 36 H 1.09001 * 109.47537 * 59.99776 * 6 4 3 37 37 H 1.09000 * 109.46902 * 55.00139 * 7 4 3 38 38 H 1.08990 * 109.47268 * 294.99782 * 7 4 3 39 39 H 1.09001 * 110.36863 * 322.93452 * 11 10 8 40 40 H 1.09000 * 110.36244 * 85.14936 * 11 10 8 41 41 H 1.09000 * 109.47369 * 172.19661 * 14 12 11 42 42 H 1.08999 * 109.47009 * 292.20242 * 14 12 11 43 43 H 1.09002 * 109.46507 * 52.19707 * 14 12 11 44 44 H 0.97001 * 119.99790 * 340.01941 * 17 15 12 45 45 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88283 * 59.55899 * 26 10 8 47 47 H 1.09004 * 110.01221 * 298.46326 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8532 0.8428 6 6 4.0806 0.8326 -1.3063 7 6 4.0799 2.8796 0.1263 8 6 5.5818 2.8705 0.2505 9 8 6.1849 1.8184 0.2392 10 7 6.2547 4.0318 0.3732 11 6 7.7171 4.1679 0.5019 12 6 7.9276 5.5283 1.2123 13 1 7.7885 5.4325 2.2891 14 6 9.3061 6.1082 0.8891 15 6 6.8007 6.3875 0.5803 16 1 7.1137 6.7910 -0.3826 17 7 6.4013 7.4666 1.4871 18 6 5.7425 8.5630 0.9983 19 1 5.5170 8.6321 -0.0557 20 6 5.3644 9.5858 1.8573 21 7 5.6388 9.5014 3.1419 22 14 4.4589 11.0778 1.1917 23 1 4.1646 12.0156 2.3049 24 1 5.3057 11.7603 0.1804 25 1 3.1867 10.6439 0.5605 26 6 5.6523 5.3726 0.3997 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.1705 0.8322 -1.3057 35 1 3.7173 -0.1912 -1.3959 36 1 3.7176 1.4219 -2.1485 37 1 3.6449 3.3433 1.0116 38 1 3.7920 3.4460 -0.7593 39 1 8.1217 3.3570 1.1076 40 1 8.1854 4.1755 -0.4823 41 1 9.3758 7.1216 1.2845 42 1 10.0774 5.4868 1.3441 43 1 9.4470 6.1293 -0.1915 44 1 6.6034 7.4044 2.4337 45 1 5.3743 10.2159 3.7423 46 1 4.9552 5.4494 1.2341 47 1 5.1307 5.5658 -0.5378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214296883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -55.567061 kcal Electronic energy + Delta-G solvation = -22766.658375 eV Core-core repulsion = 19562.414691 eV Total energy + Delta-G solvation = -3204.243684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95491 -37.97792 -36.51365 -34.07482 -32.85070 -32.39647 -30.73819 -28.37336 -27.46993 -26.67572 -25.69223 -23.98919 -22.23715 -21.37091 -20.14583 -19.93931 -18.72731 -17.15217 -16.77450 -15.97546 -15.77710 -15.17874 -14.95227 -14.25970 -13.98762 -13.77888 -13.62512 -13.51527 -13.18766 -13.01355 -12.71996 -12.45142 -12.36660 -12.12854 -11.90764 -11.77919 -11.55752 -11.45676 -11.16213 -11.04423 -10.99079 -10.80123 -10.73188 -10.62937 -10.59783 -10.48589 -10.30249 -9.98533 -9.78250 -9.46418 -9.01828 -8.28744 -7.12439 -5.87850 -3.18860 2.89123 3.28039 3.37564 3.42827 3.43428 4.48267 4.59166 4.71660 4.78931 4.90930 5.04920 5.12029 5.14509 5.21058 5.23464 5.43760 5.50109 5.54022 5.60587 5.62559 5.64472 5.72691 5.76127 5.78733 5.81810 5.84988 5.90144 5.91899 5.98845 6.05624 6.08456 6.17741 6.19269 6.25463 6.37550 6.39963 6.46958 6.48397 6.57300 6.63404 6.86176 7.59653 7.85478 8.29419 8.43774 9.41503 9.95419 10.30412 11.33970 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014679 B = 0.003936 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.073666 B = 7112.764573 C = 8655.322829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.074 4.074 5 H 0.076 0.924 6 C -0.153 4.153 7 C -0.133 4.133 8 C 0.526 3.474 9 O -0.554 6.554 10 N -0.614 5.614 11 C 0.114 3.886 12 C -0.114 4.114 13 H 0.083 0.917 14 C -0.133 4.133 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.712 5.712 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.073 3.927 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.073 0.927 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 -14.739 -6.561 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.093 4.093 5 H 0.094 0.906 6 C -0.210 4.210 7 C -0.173 4.173 8 C 0.316 3.684 9 O -0.433 6.433 10 N -0.348 5.348 11 C -0.009 4.009 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.191 4.191 15 C 0.065 3.935 16 H 0.083 0.917 17 N -0.352 5.352 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.054 4.054 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.970 -15.177 -6.646 16.833 hybrid contribution -0.626 1.009 0.023 1.187 sum -3.595 -14.169 -6.623 16.048 Atomic orbital electron populations 1.21783 0.96121 1.01336 1.01783 1.21565 0.95492 0.97069 1.02133 1.21689 0.94791 0.96817 1.02125 1.20891 0.94348 0.94429 0.99660 0.90562 1.21985 1.03056 0.99926 0.96003 1.21724 0.92093 0.99182 1.04302 1.20365 0.89896 0.82241 0.75928 1.90618 1.70594 1.30385 1.51695 1.48605 1.08007 1.06649 1.71523 1.22232 0.80982 0.97721 1.00009 1.22616 0.96437 0.93765 1.00520 0.89870 1.21610 0.94812 1.01546 1.01146 1.21243 0.89935 0.87606 0.94746 0.91665 1.42353 1.68273 1.17658 1.06902 1.19192 1.29533 0.95990 0.93307 0.91041 1.24763 1.01369 0.98836 0.95456 1.69653 1.51633 1.34138 1.02240 0.86269 0.79681 0.82637 0.77574 1.21649 1.21154 1.21150 1.23319 0.99482 0.81187 1.01362 0.92789 0.92834 0.93014 0.91794 0.92108 0.91896 0.91930 0.90769 0.92966 0.93535 0.88953 0.89130 0.91092 0.91828 0.91342 0.93183 0.92865 0.77868 0.93276 0.90850 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.15 0.37 -0.84 16 2 C -0.13 -1.11 5.69 -26.73 -0.15 -1.26 16 3 C -0.12 -1.14 4.68 -26.73 -0.13 -1.26 16 4 C -0.07 -0.87 2.04 -90.62 -0.18 -1.05 16 5 H 0.08 0.99 7.96 -51.93 -0.41 0.57 16 6 C -0.15 -1.79 8.69 37.16 0.32 -1.46 16 7 C -0.13 -1.70 4.37 -27.88 -0.12 -1.82 16 8 C 0.53 8.35 7.57 -10.98 -0.08 8.27 16 9 O -0.55 -10.05 14.22 5.56 0.08 -9.97 16 10 N -0.61 -9.79 3.33 -170.52 -0.57 -10.36 16 11 C 0.11 1.70 6.37 -2.53 -0.02 1.69 16 12 C -0.11 -1.78 3.25 -88.47 -0.29 -2.07 16 13 H 0.08 1.39 8.00 -51.93 -0.42 0.97 16 14 C -0.13 -1.87 9.31 37.16 0.35 -1.52 16 15 C 0.18 3.23 3.06 -66.09 -0.20 3.03 16 16 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 17 N -0.71 -16.44 5.18 -51.65 -0.27 -16.71 16 18 C -0.25 -6.45 9.98 -15.06 -0.15 -6.60 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -26.77 13.06 55.49 0.72 -26.05 16 22 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.07 1.22 6.24 -3.07 -0.02 1.20 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 35 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 40 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.39 9.63 7.71 -40.82 -0.31 9.31 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -28.80 370.05 -8.72 -37.52 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.84 Total: 7.65 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.40 Total: -4.00 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.11 Total: -53.12 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.80 -8.72 -37.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214296883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.048 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds