Wall clock time and date at job start Tue Mar 31 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46649 * 2 1 4 4 C 1.52999 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47230 * 54.99882 * 4 3 2 6 6 C 1.53003 * 109.47253 * 294.99964 * 4 3 2 7 7 C 1.53004 * 109.47232 * 175.00277 * 4 3 2 8 8 C 1.50702 * 109.47122 * 184.99859 * 7 4 3 9 9 O 1.21290 * 119.99900 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00002 * 179.97438 * 8 7 4 11 11 C 1.47428 * 125.64881 * 179.97438 * 10 8 7 12 12 C 1.54900 * 104.83449 * 204.16728 * 11 10 8 13 13 H 1.09011 * 111.00318 * 81.06450 * 12 11 10 14 14 C 1.52996 * 111.00779 * 204.91826 * 12 11 10 15 15 C 1.55161 * 101.58443 * 322.99535 * 12 11 10 16 16 H 1.09001 * 110.86964 * 277.07237 * 15 12 11 17 17 N 1.46499 * 110.72445 * 153.86349 * 15 12 11 18 18 C 1.36935 * 119.99938 * 160.02467 * 17 15 12 19 19 H 1.07999 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99632 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99535 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 0.27829 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71949 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72145 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72253 * 22 20 18 26 26 C 1.47017 * 125.64596 * 0.03003 * 10 8 7 27 27 H 1.08998 * 109.47213 * 299.99516 * 1 2 3 28 28 H 1.08994 * 109.47443 * 60.00056 * 1 2 3 29 29 H 1.09004 * 109.47250 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46583 * 240.00186 * 2 1 3 31 31 H 1.08997 * 109.46940 * 120.00049 * 2 1 3 32 32 H 1.09004 * 109.47476 * 60.00733 * 3 2 1 33 33 H 1.09005 * 109.47637 * 299.99985 * 3 2 1 34 34 H 1.09009 * 109.46704 * 59.99988 * 6 4 3 35 35 H 1.08996 * 109.47497 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.47484 * 300.00631 * 6 4 3 37 37 H 1.08996 * 109.47324 * 65.00157 * 7 4 3 38 38 H 1.09001 * 109.47028 * 304.99692 * 7 4 3 39 39 H 1.09005 * 110.36611 * 323.01235 * 11 10 8 40 40 H 1.09004 * 110.36164 * 85.22009 * 11 10 8 41 41 H 1.08998 * 109.47394 * 172.19820 * 14 12 11 42 42 H 1.08996 * 109.46838 * 292.19667 * 14 12 11 43 43 H 1.09000 * 109.46980 * 52.19595 * 14 12 11 44 44 H 0.97004 * 119.99469 * 340.02536 * 17 15 12 45 45 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88548 * 59.48977 * 26 10 8 47 47 H 1.08995 * 110.01292 * 298.38677 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8328 1.3064 7 6 4.0798 2.8796 -0.1263 8 6 5.5817 2.8707 -0.2504 9 8 6.1848 1.8185 -0.2399 10 7 6.2546 4.0319 -0.3741 11 6 7.7169 4.1682 -0.5029 12 6 8.0281 5.5985 0.0036 13 1 8.0681 5.6273 1.0926 14 6 9.3294 6.1249 -0.6049 15 6 6.8048 6.3907 -0.5289 16 1 6.9520 6.6787 -1.5698 17 7 6.5490 7.5698 0.3021 18 6 5.8087 8.6095 -0.1940 19 1 5.4131 8.5601 -1.1977 20 6 5.5659 9.7264 0.5936 21 7 4.8548 10.7260 0.1166 22 14 6.2556 9.8146 2.3273 23 1 5.2714 9.2430 3.2812 24 1 7.5202 9.0394 2.3971 25 1 6.5234 11.2315 2.6822 26 6 5.6519 5.3726 -0.4018 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8900 34 1 3.7172 -0.1911 1.3959 35 1 5.1705 0.8324 1.3058 36 1 3.7175 1.4219 2.1485 37 1 3.7919 3.4461 0.7593 38 1 3.6448 3.3434 -1.0117 39 1 8.2229 3.4277 0.1167 40 1 8.0176 4.0591 -1.5449 41 1 9.4534 7.1759 -0.3443 42 1 10.1706 5.5522 -0.2145 43 1 9.2913 6.0214 -1.6893 44 1 6.9041 7.6139 1.2037 45 1 4.6854 11.5067 0.6668 46 1 5.1005 5.5504 0.5215 47 1 4.9819 5.4628 -1.2568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214296884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:56 Heat of formation + Delta-G solvation = -51.324283 kcal Electronic energy + Delta-G solvation = -22836.032590 eV Core-core repulsion = 19631.972887 eV Total energy + Delta-G solvation = -3204.059703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03701 -38.08487 -36.56277 -34.21247 -32.89144 -32.45702 -31.08616 -28.43881 -27.86938 -26.69384 -25.77583 -23.82474 -22.21308 -21.27469 -20.27118 -20.08981 -18.78376 -17.60241 -16.82144 -16.24123 -15.62565 -15.24708 -14.94048 -14.38848 -14.17398 -13.89163 -13.58292 -13.35135 -13.25660 -13.21586 -12.72420 -12.62402 -12.41539 -12.21974 -11.95438 -11.74378 -11.71254 -11.58177 -11.46526 -11.15775 -11.04606 -10.86163 -10.77663 -10.67454 -10.62368 -10.51105 -10.37478 -10.06478 -9.69889 -9.52852 -9.06065 -8.36892 -7.44060 -5.88422 -3.26472 2.82841 3.19894 3.29945 3.32828 3.39018 4.48502 4.51573 4.67131 4.76470 4.82741 4.98855 5.03620 5.04549 5.08396 5.18916 5.39345 5.43114 5.47565 5.48258 5.58906 5.62010 5.67199 5.69001 5.70122 5.75030 5.76263 5.82384 5.84555 5.89470 6.02994 6.06395 6.06784 6.10221 6.16216 6.27488 6.34026 6.37613 6.43884 6.44962 6.53400 6.72938 7.76391 7.86168 8.30301 8.37023 9.06788 9.79123 9.97382 11.29191 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.003977 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.609336 B = 7039.654661 C = 8206.787129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.074 4.074 5 H 0.076 0.924 6 C -0.153 4.153 7 C -0.134 4.134 8 C 0.527 3.473 9 O -0.552 6.552 10 N -0.616 5.616 11 C 0.114 3.886 12 C -0.117 4.117 13 H 0.081 0.919 14 C -0.135 4.135 15 C 0.182 3.818 16 H 0.074 0.926 17 N -0.736 5.736 18 C -0.253 4.253 19 H 0.092 0.908 20 C 0.010 3.990 21 N -0.929 5.929 22 Si 0.883 3.117 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.290 1.290 26 C 0.074 3.926 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -17.801 -0.165 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.093 4.093 5 H 0.094 0.906 6 C -0.210 4.210 7 C -0.174 4.174 8 C 0.317 3.683 9 O -0.431 6.431 10 N -0.349 5.349 11 C -0.009 4.009 12 C -0.137 4.137 13 H 0.099 0.901 14 C -0.193 4.193 15 C 0.071 3.929 16 H 0.092 0.908 17 N -0.378 5.378 18 C -0.382 4.382 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.575 5.575 22 Si 0.713 3.287 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C -0.052 4.052 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.132 -18.212 -0.299 18.250 hybrid contribution 0.253 0.398 1.282 1.365 sum -0.879 -17.815 0.983 17.863 Atomic orbital electron populations 1.21785 0.96096 1.01347 1.01808 1.21564 0.95517 0.97049 1.02119 1.21693 0.94744 0.96834 1.02165 1.20891 0.94390 0.94356 0.99653 0.90593 1.21988 1.03018 0.99967 0.96048 1.21736 0.91949 0.99276 1.04393 1.20381 0.89949 0.82194 0.75825 1.90626 1.70572 1.30333 1.51597 1.48602 1.07953 1.06663 1.71730 1.22220 0.80929 0.96941 1.00797 1.22654 0.96432 0.93791 1.00817 0.90113 1.21624 0.95365 1.01740 1.00530 1.21216 0.89780 0.85948 0.95995 0.90781 1.42712 1.63873 1.16754 1.14470 1.19059 1.24864 0.94155 1.00160 0.88989 1.24675 0.99676 0.96350 0.97926 1.69700 1.43164 1.07860 1.36826 0.86588 0.79014 0.77097 0.86046 1.21003 1.20210 1.21623 1.23224 0.98969 0.81032 1.01990 0.92790 0.92799 0.93011 0.92138 0.91783 0.91852 0.91919 0.92941 0.90811 0.93460 0.88940 0.89002 0.91000 0.91595 0.91476 0.93056 0.92500 0.80259 0.92889 0.90899 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.08 5.69 -26.73 -0.15 -1.23 16 3 C -0.12 -1.11 4.68 -26.73 -0.13 -1.23 16 4 C -0.07 -0.84 2.04 -90.62 -0.18 -1.02 16 5 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 6 C -0.15 -1.79 8.69 37.16 0.32 -1.46 16 7 C -0.13 -1.65 4.37 -27.88 -0.12 -1.77 16 8 C 0.53 8.03 7.57 -10.98 -0.08 7.95 16 9 O -0.55 -9.70 14.22 5.55 0.08 -9.62 16 10 N -0.62 -9.34 3.33 -170.52 -0.57 -9.91 16 11 C 0.11 1.61 6.37 -2.53 -0.02 1.60 16 12 C -0.12 -1.71 3.25 -88.48 -0.29 -1.99 16 13 H 0.08 1.22 8.00 -51.92 -0.42 0.80 16 14 C -0.13 -1.75 9.31 37.16 0.35 -1.41 16 15 C 0.18 3.17 3.06 -66.09 -0.20 2.97 16 16 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 17 N -0.74 -15.90 4.98 -51.65 -0.26 -16.15 16 18 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 21 N -0.93 -27.91 13.97 55.49 0.78 -27.13 16 22 Si 0.88 21.03 27.74 -169.99 -4.71 16.32 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.07 1.18 6.24 -3.06 -0.02 1.16 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.54 6.57 -51.92 -0.34 0.20 16 35 H 0.07 1.04 5.95 -51.93 -0.31 0.73 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 40 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.36 7.83 5.57 -40.82 -0.23 7.60 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -29.80 366.93 -8.36 -38.16 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.80 Total: 6.65 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.41 Total: -3.84 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.05 Total: -53.19 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.80 -8.36 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214296884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.169 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds