Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53005 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47271 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46988 * 304.99739 * 5 4 3 7 7 C 1.53007 * 109.47031 * 64.99906 * 5 4 3 8 8 C 1.50699 * 109.47072 * 184.99656 * 5 4 3 9 9 O 1.21277 * 120.00372 * 334.14773 * 8 5 4 10 10 N 1.34782 * 119.99811 * 154.14055 * 8 5 4 11 11 C 1.47428 * 125.64621 * 174.68180 * 10 8 5 12 12 C 1.54913 * 104.82937 * 204.09970 * 11 10 8 13 13 H 1.08999 * 111.00576 * 81.06303 * 12 11 10 14 14 C 1.53000 * 110.99968 * 204.91853 * 12 11 10 15 15 C 1.55155 * 101.58177 * 322.99240 * 12 11 10 16 16 H 1.09000 * 110.87218 * 277.07206 * 15 12 11 17 17 N 1.46499 * 110.72163 * 153.87019 * 15 12 11 18 18 C 1.36939 * 120.00266 * 160.02270 * 17 15 12 19 19 H 1.07995 * 119.99702 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99720 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99707 * 180.27599 * 20 18 17 23 23 H 1.48493 * 109.47230 * 179.72821 * 22 20 18 24 24 H 1.48500 * 109.46899 * 299.72759 * 22 20 18 25 25 H 1.48501 * 109.47167 * 59.72628 * 22 20 18 26 26 C 1.47023 * 125.64904 * 354.64858 * 10 8 5 27 27 H 1.08999 * 109.47524 * 300.00080 * 1 2 3 28 28 H 1.09005 * 109.47328 * 60.00623 * 1 2 3 29 29 H 1.09005 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47524 * 239.99920 * 2 1 3 31 31 H 1.09005 * 109.47328 * 119.99377 * 2 1 3 32 32 H 1.09007 * 109.47178 * 59.99930 * 3 2 1 33 33 H 1.09001 * 109.47245 * 299.99562 * 3 2 1 34 34 H 1.08994 * 109.46870 * 59.99642 * 4 3 2 35 35 H 1.09001 * 109.46765 * 300.00023 * 4 3 2 36 36 H 1.09001 * 109.46866 * 304.35255 * 7 5 4 37 37 H 1.08991 * 109.46808 * 64.36034 * 7 5 4 38 38 H 1.09006 * 109.46518 * 184.35746 * 7 5 4 39 39 H 1.09000 * 110.36473 * 322.93487 * 11 10 8 40 40 H 1.08994 * 110.36219 * 85.15147 * 11 10 8 41 41 H 1.09005 * 109.46522 * 172.19467 * 14 12 11 42 42 H 1.08997 * 109.47352 * 292.19573 * 14 12 11 43 43 H 1.09000 * 109.47477 * 52.20055 * 14 12 11 44 44 H 0.97004 * 119.99604 * 340.01795 * 17 15 12 45 45 H 0.97009 * 119.99758 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.88255 * 59.55306 * 26 10 8 47 47 H 1.08997 * 109.88392 * 298.38850 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 3.6745 3.5687 1.3087 8 6 5.5819 2.8869 -0.1218 9 8 6.2226 1.9295 0.2571 10 7 6.2131 3.9526 -0.6533 11 6 7.6740 4.1346 -0.7321 12 6 7.8785 5.6678 -0.8181 13 1 7.8214 6.1256 0.1694 14 6 9.2048 6.0065 -1.5015 15 6 6.6743 6.0937 -1.6989 16 1 6.8999 5.9589 -2.7567 17 7 6.2967 7.4823 -1.4242 18 6 5.5594 8.1852 -2.3394 19 1 5.2559 7.7157 -3.2634 20 6 5.2012 9.5008 -2.0789 21 7 5.5707 10.0727 -0.9525 22 14 4.1889 10.4572 -3.3238 23 1 3.9359 11.8267 -2.8088 24 1 4.9319 10.5402 -4.6069 25 1 2.8940 9.7647 -3.5456 26 6 5.5589 5.1258 -1.2510 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9336 0.9286 -0.8890 35 1 3.9329 0.9289 0.8909 36 1 2.5941 3.4991 1.4353 37 1 4.1709 3.0766 2.1450 38 1 3.9699 4.6175 1.2770 39 1 8.1545 3.7374 0.1621 40 1 8.0694 3.6469 -1.6230 41 1 9.2605 7.0815 -1.6736 42 1 10.0321 5.6974 -0.8627 43 1 9.2665 5.4823 -2.4551 44 1 6.5689 7.9038 -0.5941 45 1 5.3200 10.9919 -0.7703 46 1 4.9214 5.6113 -0.5121 47 1 4.9651 4.8203 -2.1125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214550369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = -57.107465 kcal Electronic energy + Delta-G solvation = -22910.493077 eV Core-core repulsion = 19706.182596 eV Total energy + Delta-G solvation = -3204.310481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.01582 -37.85243 -36.25950 -34.07746 -33.47127 -32.30209 -30.72935 -28.75705 -27.50484 -26.49305 -25.00011 -24.00661 -22.38896 -21.33951 -20.69233 -19.95190 -18.55555 -17.15542 -16.86626 -15.97155 -15.67898 -15.40780 -14.71543 -14.24535 -14.08899 -13.67659 -13.53777 -13.44975 -13.14844 -13.05562 -12.77930 -12.63188 -12.41083 -12.13069 -12.02357 -11.74524 -11.57830 -11.35854 -11.16374 -11.09006 -11.05266 -10.93254 -10.77279 -10.65613 -10.59968 -10.53627 -10.30036 -9.98239 -9.77891 -9.46049 -9.01438 -8.29256 -7.12264 -5.87782 -3.18731 2.87164 3.27042 3.37627 3.42958 3.43453 4.47875 4.57344 4.68065 4.79421 4.92714 5.01903 5.08632 5.14507 5.16810 5.22190 5.39170 5.43447 5.54345 5.56849 5.62423 5.64113 5.70660 5.77285 5.80437 5.81715 5.84151 5.87902 5.92759 5.96302 6.00826 6.09235 6.10410 6.19139 6.25412 6.31034 6.33651 6.38663 6.48989 6.56930 6.63364 6.86512 7.59919 7.84988 8.29447 8.42448 9.41632 9.95448 10.30526 11.34006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.004219 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.783408 B = 6635.044006 C = 8183.341039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.099 4.099 5 C -0.107 4.107 6 H 0.091 0.909 7 C -0.141 4.141 8 C 0.531 3.469 9 O -0.557 6.557 10 N -0.613 5.613 11 C 0.113 3.887 12 C -0.113 4.113 13 H 0.083 0.917 14 C -0.133 4.133 15 C 0.177 3.823 16 H 0.065 0.935 17 N -0.711 5.711 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.072 3.928 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.074 0.926 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -15.138 1.828 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.137 4.137 5 C -0.128 4.128 6 H 0.109 0.891 7 C -0.199 4.199 8 C 0.320 3.680 9 O -0.435 6.435 10 N -0.346 5.346 11 C -0.010 4.010 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.191 4.191 15 C 0.065 3.935 16 H 0.083 0.917 17 N -0.352 5.352 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.053 4.053 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.242 -15.582 1.914 16.031 hybrid contribution -0.590 0.834 -0.449 1.116 sum -3.832 -14.748 1.465 15.308 Atomic orbital electron populations 1.21781 0.96024 1.01375 1.01834 1.21520 0.95640 0.97038 1.02013 1.21703 0.95155 0.96736 1.02363 1.21417 0.94824 0.94407 1.03095 1.21268 0.91857 0.98768 1.00888 0.89118 1.21749 1.01913 1.00821 0.95383 1.20359 0.89990 0.81078 0.76592 1.90641 1.68326 1.34054 1.50523 1.48591 1.07685 1.19640 1.58698 1.22241 0.81088 0.96152 1.01471 1.22616 0.96441 0.93521 1.00724 0.89856 1.21611 0.95203 1.02675 0.99627 1.21242 0.89765 0.85563 0.96953 0.91669 1.42350 1.63643 1.06771 1.22390 1.19191 1.26042 0.94066 0.98717 0.91049 1.24755 1.01082 0.97129 0.97414 1.69650 1.50326 1.13568 1.24107 0.86276 0.80119 0.79240 0.80572 1.21650 1.21155 1.21151 1.23345 0.98684 0.85815 0.97504 0.92779 0.92750 0.92987 0.92121 0.92061 0.91551 0.91899 0.91872 0.91031 0.91254 0.92285 0.91741 0.91183 0.91804 0.91332 0.93183 0.92856 0.77870 0.93281 0.90726 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.12 -1.09 5.93 -26.74 -0.16 -1.25 16 3 C -0.12 -1.18 4.98 -26.73 -0.13 -1.31 16 4 C -0.10 -1.18 4.14 -26.73 -0.11 -1.29 16 5 C -0.11 -1.41 2.29 -91.77 -0.21 -1.62 16 6 H 0.09 1.16 7.28 -51.93 -0.38 0.79 16 7 C -0.14 -1.74 9.03 37.16 0.34 -1.40 16 8 C 0.53 8.70 6.94 -10.98 -0.08 8.63 16 9 O -0.56 -10.62 16.51 5.56 0.09 -10.53 16 10 N -0.61 -9.93 3.33 -170.52 -0.57 -10.50 16 11 C 0.11 1.73 6.35 -2.52 -0.02 1.71 16 12 C -0.11 -1.78 3.25 -88.47 -0.29 -2.07 16 13 H 0.08 1.39 8.00 -51.93 -0.42 0.97 16 14 C -0.13 -1.87 9.31 37.16 0.35 -1.53 16 15 C 0.18 3.24 3.06 -66.10 -0.20 3.04 16 16 H 0.07 1.21 8.02 -51.93 -0.42 0.80 16 17 N -0.71 -16.40 5.18 -51.66 -0.27 -16.66 16 18 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 22 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.07 1.23 5.84 -3.07 -0.02 1.21 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.62 6.47 -51.93 -0.34 0.28 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 36 H 0.07 0.72 6.37 -51.93 -0.33 0.39 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.86 7.60 -51.93 -0.39 0.47 16 39 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 40 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.39 9.59 7.71 -40.82 -0.31 9.28 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.07 1.36 7.49 -51.93 -0.39 0.97 16 47 H 0.06 0.94 8.01 -51.93 -0.42 0.53 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -29.12 372.15 -8.68 -37.80 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -8.84 Total: 7.49 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.41 Total: -3.57 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.11 Total: -53.13 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.12 -8.68 -37.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214550369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.309 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds