Wall clock time and date at job start Tue Mar 31 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47149 * 2 1 4 4 C 1.52997 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47147 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47414 * 54.99838 * 5 4 3 7 7 C 1.53004 * 109.47073 * 294.99507 * 5 4 3 8 8 C 1.50703 * 109.47483 * 174.99845 * 5 4 3 9 9 O 1.21286 * 119.99718 * 26.15325 * 8 5 4 10 10 N 1.34774 * 120.00230 * 206.15163 * 8 5 4 11 11 C 1.47420 * 125.64878 * 174.91410 * 10 8 5 12 12 C 1.54902 * 104.83393 * 204.09371 * 11 10 8 13 13 H 1.08998 * 111.00592 * 81.06518 * 12 11 10 14 14 C 1.53003 * 111.00695 * 204.91693 * 12 11 10 15 15 C 1.55164 * 101.58203 * 322.98987 * 12 11 10 16 16 H 1.09002 * 110.86770 * 277.06843 * 15 12 11 17 17 N 1.46495 * 110.72006 * 153.86432 * 15 12 11 18 18 C 1.36935 * 119.99603 * 160.02187 * 17 15 12 19 19 H 1.08000 * 120.00376 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99802 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99713 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00096 * 0.28504 * 20 18 17 23 23 H 1.48501 * 109.47070 * 269.72352 * 22 20 18 24 24 H 1.48498 * 109.47062 * 29.71573 * 22 20 18 25 25 H 1.48493 * 109.47501 * 149.71857 * 22 20 18 26 26 C 1.47017 * 125.64949 * 354.86997 * 10 8 5 27 27 H 1.09000 * 109.47196 * 300.00419 * 1 2 3 28 28 H 1.09004 * 109.46682 * 60.00158 * 1 2 3 29 29 H 1.08997 * 109.46922 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47441 * 240.00325 * 2 1 3 31 31 H 1.08998 * 109.47319 * 120.00125 * 2 1 3 32 32 H 1.09000 * 109.46684 * 59.99862 * 3 2 1 33 33 H 1.09004 * 109.46808 * 299.99897 * 3 2 1 34 34 H 1.09000 * 109.47196 * 59.99580 * 4 3 2 35 35 H 1.09004 * 109.47181 * 299.99668 * 4 3 2 36 36 H 1.09000 * 109.46548 * 66.01821 * 7 5 4 37 37 H 1.08999 * 109.47031 * 186.01275 * 7 5 4 38 38 H 1.09001 * 109.47187 * 306.01776 * 7 5 4 39 39 H 1.09004 * 110.36924 * 322.93350 * 11 10 8 40 40 H 1.09006 * 110.36912 * 85.14069 * 11 10 8 41 41 H 1.08997 * 109.47406 * 172.19356 * 14 12 11 42 42 H 1.09000 * 109.47291 * 292.19598 * 14 12 11 43 43 H 1.09003 * 109.46992 * 52.19274 * 14 12 11 44 44 H 0.96997 * 120.00581 * 340.03094 * 17 15 12 45 45 H 0.97003 * 119.99693 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.88244 * 59.56024 * 26 10 8 47 47 H 1.09004 * 110.01511 * 298.46882 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4238 0.8430 7 6 3.6758 3.5694 -1.3061 8 6 5.5818 2.8869 0.1258 9 8 6.2233 1.9318 -0.2582 10 7 6.2122 3.9497 0.6638 11 6 7.6570 4.0416 0.9419 12 6 7.7783 5.1039 2.0627 13 1 7.5644 4.6683 3.0387 14 6 9.1602 5.7605 2.0488 15 6 6.6771 6.1170 1.6523 16 1 7.0478 6.8080 0.8953 17 7 6.1837 6.8483 2.8219 18 6 5.5323 8.0416 2.6584 19 1 5.3820 8.4436 1.6673 20 6 5.0643 8.7344 3.7666 21 7 4.4387 9.8817 3.6096 22 14 5.3300 8.0425 5.4813 23 1 4.1787 7.1806 5.8512 24 1 6.5777 7.2375 5.5024 25 1 5.4449 9.1591 6.4534 26 6 5.5729 5.2099 1.0697 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 2.5907 3.6638 -1.3464 37 1 4.1287 4.5598 -1.3528 38 1 4.0202 2.9722 -2.1504 39 1 8.0388 3.0807 1.2869 40 1 8.1951 4.3648 0.0507 41 1 9.1734 6.5944 2.7506 42 1 9.9134 5.0285 2.3402 43 1 9.3784 6.1265 1.0455 44 1 6.3184 6.4873 3.7120 45 1 4.1120 10.3659 4.3840 46 1 4.8155 5.0137 1.8287 47 1 5.1153 5.6914 0.2054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214550370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:24 Heat of formation + Delta-G solvation = -53.073670 kcal Electronic energy + Delta-G solvation = -22971.138165 eV Core-core repulsion = 19767.002602 eV Total energy + Delta-G solvation = -3204.135562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10144 -37.96710 -36.28988 -34.21619 -33.52044 -32.37149 -31.07602 -28.79814 -27.92150 -26.55153 -25.07390 -23.84415 -22.33615 -21.26439 -20.70747 -20.20038 -18.63469 -17.61016 -16.96277 -16.10040 -15.75423 -15.20124 -14.84749 -14.37211 -14.09530 -13.80670 -13.71113 -13.37476 -13.22203 -13.15096 -12.75483 -12.58120 -12.49762 -12.44891 -12.02044 -11.81034 -11.71006 -11.52962 -11.37734 -11.18308 -11.11693 -10.97934 -10.83621 -10.69380 -10.65831 -10.55964 -10.37376 -10.05803 -9.69719 -9.52691 -9.05513 -8.37509 -7.43897 -5.88289 -3.26296 2.81137 3.18748 3.29935 3.32858 3.39043 4.48155 4.49886 4.64161 4.76498 4.84442 4.97444 5.01680 5.03759 5.06357 5.12259 5.36384 5.39202 5.43387 5.47681 5.54996 5.61414 5.65035 5.67823 5.69297 5.74908 5.78938 5.82835 5.84439 5.87989 5.93838 6.03837 6.06647 6.08297 6.11370 6.25416 6.28251 6.31498 6.36467 6.44207 6.52481 6.72796 7.75824 7.86336 8.30392 8.35702 9.06954 9.79273 9.97530 11.29329 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.004369 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.365639 B = 6407.977023 C = 7652.582788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.099 4.099 5 C -0.108 4.108 6 H 0.093 0.907 7 C -0.140 4.140 8 C 0.532 3.468 9 O -0.555 6.555 10 N -0.615 5.615 11 C 0.114 3.886 12 C -0.117 4.117 13 H 0.081 0.919 14 C -0.135 4.135 15 C 0.182 3.818 16 H 0.074 0.926 17 N -0.736 5.736 18 C -0.253 4.253 19 H 0.092 0.908 20 C 0.011 3.989 21 N -0.929 5.929 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.276 1.276 25 H -0.290 1.290 26 C 0.074 3.926 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -15.515 -6.850 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.137 4.137 5 C -0.129 4.129 6 H 0.111 0.889 7 C -0.198 4.198 8 C 0.321 3.679 9 O -0.434 6.434 10 N -0.348 5.348 11 C -0.009 4.009 12 C -0.137 4.137 13 H 0.099 0.901 14 C -0.193 4.193 15 C 0.071 3.929 16 H 0.092 0.908 17 N -0.378 5.378 18 C -0.383 4.383 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.575 5.575 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C -0.052 4.052 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.692 -15.820 -7.159 17.379 hybrid contribution 0.000 -0.249 1.383 1.406 sum -0.692 -16.070 -5.775 17.090 Atomic orbital electron populations 1.21780 0.95997 1.01387 1.01856 1.21521 0.95675 0.97021 1.01997 1.21686 0.95073 0.96771 1.02389 1.21423 0.94907 0.94270 1.03091 1.21288 0.91765 0.98942 1.00919 0.88900 1.21743 1.02029 1.00544 0.95449 1.20375 0.89978 0.81037 0.76551 1.90648 1.68247 1.34947 1.49519 1.48581 1.09108 1.15605 1.61482 1.22227 0.81704 0.99298 0.97661 1.22655 0.96767 0.95924 0.98336 0.90095 1.21625 0.94650 1.00564 1.02411 1.21215 0.89894 0.91042 0.90784 0.90776 1.42708 1.69047 1.23590 1.02450 1.19061 1.28586 0.95299 0.95306 0.88988 1.24669 0.99954 0.96605 0.97353 1.69696 1.42926 1.15333 1.29580 0.86594 0.77994 0.78295 0.85898 1.21006 1.20215 1.21619 1.23243 0.98707 0.83479 0.99760 0.92715 0.92780 0.92982 0.92081 0.92121 0.91848 0.91588 0.91025 0.91877 0.91269 0.92018 0.92167 0.91071 0.91581 0.91464 0.93053 0.92495 0.80258 0.92891 0.90897 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.17 4.97 -26.73 -0.13 -1.30 16 4 C -0.10 -1.15 4.14 -26.74 -0.11 -1.26 16 5 C -0.11 -1.38 2.20 -91.77 -0.20 -1.58 16 6 H 0.09 1.18 7.23 -51.93 -0.38 0.80 16 7 C -0.14 -1.58 8.78 37.16 0.33 -1.26 16 8 C 0.53 8.38 6.94 -10.98 -0.08 8.31 16 9 O -0.55 -10.26 16.51 5.55 0.09 -10.17 16 10 N -0.61 -9.49 3.33 -170.52 -0.57 -10.06 16 11 C 0.11 1.64 6.35 -2.54 -0.02 1.62 16 12 C -0.12 -1.71 3.25 -88.47 -0.29 -2.00 16 13 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 14 C -0.13 -1.76 9.31 37.16 0.35 -1.41 16 15 C 0.18 3.18 3.06 -66.10 -0.20 2.98 16 16 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 17 N -0.74 -15.90 4.98 -51.65 -0.26 -16.15 16 18 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 21 N -0.93 -27.87 13.97 55.49 0.78 -27.10 16 22 Si 0.88 21.01 27.74 -169.99 -4.71 16.30 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.07 1.19 6.06 -3.07 -0.02 1.18 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 34 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.67 6.87 -51.93 -0.36 0.31 16 37 H 0.06 0.73 7.25 -51.93 -0.38 0.36 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.07 0.90 7.99 -51.93 -0.41 0.48 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.36 7.83 5.57 -40.82 -0.23 7.60 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 1.25 7.57 -51.93 -0.39 0.86 16 47 H 0.06 1.02 7.25 -51.93 -0.38 0.64 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -30.17 368.56 -8.31 -38.48 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.78 Total: 6.51 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.42 Total: -3.37 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.05 Total: -53.31 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.17 -8.31 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214550370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.589 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds