Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.53004 * 109.46898 * 175.62248 * 3 2 1 5 5 H 1.08994 * 109.46942 * 54.54554 * 4 3 2 6 6 C 1.52997 * 109.47220 * 294.54014 * 4 3 2 7 7 C 1.53002 * 109.47404 * 303.42539 * 6 4 3 8 8 C 1.50709 * 109.46654 * 174.54232 * 4 3 2 9 9 O 1.21274 * 120.00229 * 8.40374 * 8 4 3 10 10 N 1.34783 * 119.99553 * 188.40652 * 8 4 3 11 11 C 1.47420 * 125.64710 * 184.33892 * 10 8 4 12 12 C 1.54905 * 104.83312 * 204.09307 * 11 10 8 13 13 H 1.08999 * 111.00663 * 81.10436 * 12 11 10 14 14 C 1.52999 * 111.00534 * 204.92013 * 12 11 10 15 15 C 1.55159 * 101.58165 * 322.98854 * 12 11 10 16 16 H 1.08992 * 110.72432 * 277.13950 * 15 12 11 17 17 N 1.46501 * 110.71835 * 153.86145 * 15 12 11 18 18 C 1.36933 * 119.99681 * 155.00211 * 17 15 12 19 19 H 1.07997 * 120.00393 * 0.02562 * 18 17 15 20 20 C 1.38819 * 120.00175 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99264 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00352 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46933 * 59.99681 * 22 20 18 24 24 H 1.48493 * 109.47195 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47065 * 300.00126 * 22 20 18 26 26 C 1.47019 * 125.64668 * 4.03334 * 10 8 4 27 27 H 1.09002 * 109.47096 * 59.99944 * 1 2 3 28 28 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47213 * 299.99819 * 1 2 3 30 30 H 1.08993 * 109.47097 * 120.00636 * 2 1 3 31 31 H 1.09008 * 109.46818 * 240.00327 * 2 1 3 32 32 H 1.09000 * 109.47676 * 295.62578 * 3 2 1 33 33 H 1.09002 * 109.46861 * 55.62639 * 3 2 1 34 34 H 1.08999 * 109.46908 * 63.42961 * 6 4 3 35 35 H 1.09004 * 109.46913 * 183.42792 * 6 4 3 36 36 H 1.08995 * 109.47309 * 185.48353 * 7 6 4 37 37 H 1.08995 * 109.47234 * 305.48973 * 7 6 4 38 38 H 1.09004 * 109.46678 * 65.48075 * 7 6 4 39 39 H 1.09004 * 110.36681 * 322.93258 * 11 10 8 40 40 H 1.09000 * 110.36657 * 85.14337 * 11 10 8 41 41 H 1.08998 * 109.47369 * 58.54266 * 14 12 11 42 42 H 1.08998 * 109.47549 * 178.55018 * 14 12 11 43 43 H 1.09001 * 109.46820 * 298.54564 * 14 12 11 44 44 H 0.96996 * 120.00072 * 335.00648 * 17 15 12 45 45 H 0.97009 * 119.99301 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88298 * 298.39036 * 26 10 8 47 47 H 1.09000 * 109.88754 * 59.55864 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5661 1.4438 0.1101 5 1 3.9881 0.8270 -0.6832 6 6 3.9798 0.8788 1.4704 7 6 3.3181 1.6934 2.5837 8 6 4.0781 2.8549 -0.0245 9 8 3.2988 3.7840 -0.0388 10 7 5.4022 3.0841 -0.1290 11 6 6.0434 4.4108 -0.1752 12 6 7.3935 4.1738 -0.8968 13 1 7.2586 4.1435 -1.9779 14 6 8.4193 5.2391 -0.5046 15 6 7.8003 2.7811 -0.3469 16 1 8.2832 2.8764 0.6255 17 7 8.6735 2.0845 -1.2949 18 6 9.5420 1.1249 -0.8478 19 1 9.5830 0.8813 0.2036 20 6 10.3698 0.4651 -1.7458 21 7 10.3201 0.7624 -3.0271 22 14 11.5540 -0.8444 -1.1360 23 1 10.7898 -1.9374 -0.4829 24 1 12.3189 -1.3935 -2.2843 25 1 12.4943 -0.2438 -0.1560 26 6 6.4466 2.0526 -0.2096 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.7421 1.9333 -0.9266 33 1 1.6141 1.9784 0.8482 34 1 3.6623 -0.1614 1.5434 35 1 5.0635 0.9360 1.5732 36 1 3.6881 1.3541 3.5512 37 1 3.5573 2.7487 2.4530 38 1 2.2374 1.5577 2.5400 39 1 5.4282 5.1100 -0.7415 40 1 6.2116 4.7861 0.8342 41 1 8.5680 5.2203 0.5750 42 1 9.3655 5.0342 -1.0054 43 1 8.0551 6.2218 -0.8042 44 1 8.6364 2.3031 -2.2392 45 1 10.8983 0.3011 -3.6547 46 1 6.4398 1.4466 0.6964 47 1 6.2775 1.4210 -1.0818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216104469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = -67.286479 kcal Electronic energy + Delta-G solvation = -23410.616448 eV Core-core repulsion = 20205.864572 eV Total energy + Delta-G solvation = -3204.751876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45376 -39.25882 -37.30664 -35.84407 -34.21248 -33.41560 -32.45794 -29.88918 -29.12208 -27.74011 -25.90952 -25.55510 -23.90028 -22.81697 -21.43954 -21.22456 -19.66869 -19.08550 -17.98550 -17.37788 -16.88782 -16.66893 -16.03787 -15.85124 -15.34393 -14.96626 -14.92126 -14.61478 -14.27954 -14.18974 -14.06014 -13.72031 -13.55372 -13.33400 -12.99858 -12.93223 -12.80499 -12.79752 -12.73752 -12.27303 -12.22244 -12.08752 -12.02254 -11.88167 -11.83579 -11.68956 -11.50525 -11.42743 -11.25902 -10.93921 -10.66777 -9.62064 -9.03964 -7.92241 -5.22116 1.52189 1.53515 1.59545 1.61592 2.01778 2.58881 3.36100 3.40320 3.70107 3.78988 3.80631 3.90343 3.91595 4.19836 4.22593 4.24760 4.34454 4.35420 4.41063 4.46822 4.61425 4.63448 4.67619 4.72571 4.76702 4.86671 4.88510 4.91767 4.97859 5.06739 5.11013 5.13346 5.16287 5.22875 5.24340 5.29242 5.32233 5.37900 5.41820 5.48713 5.56878 5.57020 6.27828 6.54729 7.14379 7.35782 8.07115 8.31376 9.30497 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.004481 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.280947 B = 6247.723032 C = 7299.964245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.103 4.103 5 H 0.093 0.907 6 C -0.115 4.115 7 C -0.149 4.149 8 C 0.529 3.471 9 O -0.584 6.584 10 N -0.614 5.614 11 C 0.115 3.885 12 C -0.105 4.105 13 H 0.067 0.933 14 C -0.126 4.126 15 C 0.171 3.829 16 H 0.073 0.927 17 N -0.721 5.721 18 C -0.242 4.242 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.301 1.301 25 H -0.278 1.278 26 C 0.085 3.915 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.077 0.923 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 1.299 9.614 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.133 4.133 4 C -0.124 4.124 5 H 0.112 0.888 6 C -0.153 4.153 7 C -0.206 4.206 8 C 0.320 3.680 9 O -0.465 6.465 10 N -0.346 5.346 11 C -0.008 4.008 12 C -0.125 4.125 13 H 0.086 0.914 14 C -0.184 4.184 15 C 0.061 3.939 16 H 0.091 0.909 17 N -0.360 5.360 18 C -0.373 4.373 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.618 5.618 22 Si 0.798 3.202 23 H -0.202 1.202 24 H -0.227 1.227 25 H -0.204 1.204 26 C -0.041 4.041 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.527 1.649 9.724 17.559 hybrid contribution 0.889 -0.537 -0.684 1.244 sum -13.638 1.112 9.039 16.400 Atomic orbital electron populations 1.21754 0.95115 1.02145 1.01778 1.21579 0.96493 0.95140 1.02767 1.21424 0.91770 0.97957 1.02137 1.21404 0.98217 0.91757 1.01012 0.88841 1.21600 1.01044 1.01004 0.91618 1.21804 1.01447 0.98807 0.98583 1.20864 0.80218 0.92267 0.74675 1.90624 1.55758 1.47089 1.53048 1.48591 1.05534 1.08854 1.71661 1.22265 0.92595 0.85047 1.00855 1.22545 0.94354 0.96035 0.99615 0.91423 1.21548 0.97582 0.97433 1.01835 1.21435 0.88508 0.90030 0.93939 0.90947 1.42460 1.43200 1.44127 1.06171 1.19605 1.12554 1.11738 0.93423 0.90047 1.25495 1.02309 1.02756 0.95562 1.69813 1.43365 1.46398 1.02232 0.85294 0.78987 0.79438 0.76524 1.20250 1.22736 1.20433 1.23088 0.88537 0.91153 1.01317 0.93244 0.91655 0.92519 0.90512 0.91978 0.93336 0.91301 0.88577 0.91577 0.91234 0.95023 0.91494 0.91261 0.90196 0.91558 0.93431 0.91051 0.79342 0.94109 0.90509 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.62 16 2 C -0.12 -2.14 5.79 30.59 0.18 -1.97 16 3 C -0.09 -2.17 3.71 30.60 0.11 -2.06 16 4 C -0.10 -2.57 1.89 -11.54 -0.02 -2.59 16 5 H 0.09 2.35 8.01 -2.39 -0.02 2.33 16 6 C -0.12 -2.42 5.31 30.59 0.16 -2.26 16 7 C -0.15 -3.05 9.18 71.98 0.66 -2.39 16 8 C 0.53 16.75 5.92 87.66 0.52 17.27 16 9 O -0.58 -21.80 16.25 -3.01 -0.05 -21.85 16 10 N -0.61 -19.08 3.33 -811.77 -2.70 -21.78 16 11 C 0.12 3.34 6.39 86.85 0.56 3.89 16 12 C -0.11 -3.25 3.27 -9.40 -0.03 -3.29 16 13 H 0.07 2.30 8.01 -2.39 -0.02 2.28 16 14 C -0.13 -3.39 9.30 71.98 0.67 -2.73 16 15 C 0.17 6.12 3.07 46.19 0.14 6.26 16 16 H 0.07 2.54 7.96 -2.39 -0.02 2.52 16 17 N -0.72 -33.34 5.15 -317.30 -1.64 -34.97 16 18 C -0.24 -12.35 9.96 84.04 0.84 -11.51 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 21 N -0.97 -56.75 13.06 21.65 0.28 -56.47 16 22 Si 0.97 43.77 29.55 68.60 2.03 45.80 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.08 2.76 5.90 86.74 0.51 3.27 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.18 6.46 -2.39 -0.02 1.16 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.05 1.26 8.07 -2.39 -0.02 1.24 16 33 H 0.07 1.63 6.18 -2.39 -0.01 1.62 16 34 H 0.10 1.63 6.65 -2.39 -0.02 1.61 16 35 H 0.07 1.50 5.46 -2.38 -0.01 1.49 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.03 0.79 7.15 -2.39 -0.02 0.77 16 38 H 0.07 1.25 6.57 -2.38 -0.02 1.24 16 39 H 0.07 2.06 8.00 -2.39 -0.02 2.04 16 40 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 41 H 0.07 1.61 8.11 -2.39 -0.02 1.59 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.37 19.07 7.76 -92.71 -0.72 18.35 16 45 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 46 H 0.08 2.29 5.83 -2.39 -0.01 2.28 16 47 H 0.05 1.99 8.02 -2.39 -0.02 1.97 16 Total: -1.00 -61.98 363.18 3.62 -58.36 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.21 Total: 33.87 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.48 Total: -2.97 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.05 Total: -113.22 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -61.98 3.62 -58.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216104469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.922 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds