Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 C 1.53002 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47253 * 305.00046 * 4 3 2 6 6 C 1.53002 * 109.47203 * 65.00403 * 4 3 2 7 7 C 1.52997 * 109.47197 * 185.46445 * 6 4 3 8 8 C 1.50707 * 109.47225 * 185.00053 * 4 3 2 9 9 O 1.21277 * 120.00178 * 275.01730 * 8 4 3 10 10 N 1.34778 * 119.99625 * 95.00815 * 8 4 3 11 11 C 1.47423 * 125.64329 * 175.02072 * 10 8 4 12 12 C 1.54909 * 104.83141 * 204.09469 * 11 10 8 13 13 H 1.09001 * 111.00638 * 81.06603 * 12 11 10 14 14 C 1.52996 * 111.00894 * 204.91708 * 12 11 10 15 15 C 1.55154 * 101.58380 * 322.99263 * 12 11 10 16 16 H 1.09001 * 110.87137 * 277.07031 * 15 12 11 17 17 N 1.46496 * 110.72212 * 153.86221 * 15 12 11 18 18 C 1.36939 * 119.99907 * 160.02728 * 17 15 12 19 19 H 1.08003 * 120.00326 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99797 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99596 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00055 * 0.26847 * 20 18 17 23 23 H 1.48495 * 109.47495 * 269.72828 * 22 20 18 24 24 H 1.48499 * 109.47105 * 29.73178 * 22 20 18 25 25 H 1.48508 * 109.47190 * 149.72578 * 22 20 18 26 26 C 1.47017 * 125.65229 * 354.98473 * 10 8 4 27 27 H 1.08996 * 109.47686 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46537 * 300.00290 * 1 2 3 29 29 H 1.08999 * 109.46867 * 59.99236 * 1 2 3 30 30 H 1.09004 * 109.46672 * 240.00135 * 2 1 3 31 31 H 1.08992 * 109.47243 * 120.00781 * 2 1 3 32 32 H 1.09004 * 109.47162 * 60.00435 * 3 2 1 33 33 H 1.08999 * 109.47326 * 299.99951 * 3 2 1 34 34 H 1.09003 * 109.46657 * 305.45992 * 6 4 3 35 35 H 1.08998 * 109.47311 * 65.46127 * 6 4 3 36 36 H 1.09006 * 109.47497 * 54.94470 * 7 6 4 37 37 H 1.08994 * 109.47354 * 174.94481 * 7 6 4 38 38 H 1.09001 * 109.47165 * 294.94676 * 7 6 4 39 39 H 1.08999 * 110.37301 * 322.93094 * 11 10 8 40 40 H 1.08996 * 110.36865 * 85.15093 * 11 10 8 41 41 H 1.09002 * 109.47757 * 172.19808 * 14 12 11 42 42 H 1.09006 * 109.47256 * 292.20026 * 14 12 11 43 43 H 1.09003 * 109.47191 * 52.19546 * 14 12 11 44 44 H 0.96999 * 120.00299 * 340.02285 * 17 15 12 45 45 H 0.97001 * 119.99608 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.88279 * 59.55353 * 26 10 8 47 47 H 1.09001 * 110.01083 * 298.46370 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8330 -1.3083 7 6 5.6033 0.7075 -1.2529 8 6 4.0726 2.8578 0.1232 9 8 4.1877 3.5492 -0.8665 10 7 4.3938 3.3552 1.3339 11 6 4.9915 4.6787 1.5879 12 6 5.7146 4.5324 2.9500 13 1 6.6880 4.0577 2.8267 14 6 5.8523 5.8878 3.6463 15 6 4.7385 3.6068 3.7231 16 1 3.9256 4.1826 4.1655 17 7 5.4514 2.8453 4.7517 18 6 4.7604 2.2939 5.7975 19 1 3.6899 2.4208 5.8643 20 6 5.4360 1.5727 6.7725 21 7 4.7719 1.0432 7.7780 22 14 7.2886 1.3608 6.6618 23 1 7.6009 0.1284 5.8944 24 1 7.8810 2.5359 5.9737 25 1 7.8567 1.2497 8.0294 26 6 4.2055 2.6683 2.6200 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.6768 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.6384 -0.1544 -1.4451 35 1 3.7979 1.4755 -2.1426 36 1 5.8892 0.1395 -0.3675 37 1 5.9581 0.1920 -2.1454 38 1 6.0483 1.7014 -1.2063 39 1 5.7063 4.9290 0.8040 40 1 4.2144 5.4405 1.6490 41 1 6.2361 5.7406 4.6558 42 1 6.5421 6.5170 3.0835 43 1 4.8769 6.3719 3.6954 44 1 6.4128 2.7315 4.6919 45 1 5.2439 0.5389 8.4590 46 1 4.7656 1.7332 2.6264 47 1 3.1468 2.4672 2.7840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216104470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -51.245389 kcal Electronic energy + Delta-G solvation = -23491.622091 eV Core-core repulsion = 20287.565809 eV Total energy + Delta-G solvation = -3204.056282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17732 -38.02967 -36.10007 -34.21108 -33.05507 -32.52710 -31.08658 -29.31495 -27.91086 -26.52291 -24.44181 -23.75431 -22.55859 -21.42457 -20.69011 -20.19032 -18.58839 -17.61333 -17.05907 -16.12309 -15.35333 -15.18691 -14.93734 -14.39354 -14.01191 -13.89953 -13.48659 -13.27510 -13.22372 -13.16816 -12.92302 -12.64300 -12.36513 -12.32014 -12.01850 -11.74625 -11.72586 -11.47753 -11.43541 -11.15627 -11.14859 -10.87555 -10.81620 -10.69124 -10.64817 -10.44508 -10.37051 -10.05738 -9.69411 -9.50549 -9.05159 -8.36631 -7.43597 -5.88074 -3.26034 2.81701 3.20224 3.29985 3.32860 3.39075 4.48502 4.50435 4.65834 4.80437 4.89158 5.00881 5.04224 5.05256 5.12894 5.22711 5.35140 5.42879 5.45868 5.48074 5.59021 5.66170 5.67645 5.70422 5.71696 5.75240 5.80606 5.83958 5.85596 5.98372 6.04334 6.06910 6.10268 6.14876 6.18563 6.26210 6.28664 6.29342 6.35567 6.44405 6.53723 6.73084 7.76809 7.86622 8.30619 8.37616 9.07177 9.79502 9.97770 11.29560 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.005133 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.283589 B = 5453.462618 C = 6283.632622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.106 4.106 5 H 0.092 0.908 6 C -0.108 4.108 7 C -0.155 4.155 8 C 0.535 3.465 9 O -0.554 6.554 10 N -0.615 5.615 11 C 0.114 3.886 12 C -0.117 4.117 13 H 0.081 0.919 14 C -0.135 4.135 15 C 0.182 3.818 16 H 0.074 0.926 17 N -0.736 5.736 18 C -0.252 4.252 19 H 0.092 0.908 20 C 0.011 3.989 21 N -0.929 5.929 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.276 1.276 25 H -0.290 1.290 26 C 0.075 3.925 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.072 0.928 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 1.689 -15.527 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.127 4.127 5 H 0.110 0.890 6 C -0.146 4.146 7 C -0.212 4.212 8 C 0.324 3.676 9 O -0.433 6.433 10 N -0.348 5.348 11 C -0.009 4.009 12 C -0.137 4.137 13 H 0.099 0.901 14 C -0.192 4.192 15 C 0.071 3.929 16 H 0.092 0.908 17 N -0.378 5.378 18 C -0.382 4.382 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.575 5.575 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C -0.051 4.051 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.549 1.943 -15.901 16.221 hybrid contribution 1.340 -0.354 0.204 1.400 sum -1.209 1.589 -15.698 15.824 Atomic orbital electron populations 1.21765 0.95784 1.01570 1.01845 1.21581 0.95900 0.96264 1.02438 1.21495 0.92398 0.97726 1.02765 1.21411 0.97187 0.93396 1.00707 0.88982 1.21468 0.96007 1.00742 0.96344 1.21803 0.95918 1.01944 1.01539 1.20306 0.76937 0.88917 0.81482 1.90638 1.54893 1.61130 1.36600 1.48595 1.61624 1.18089 1.06474 1.22221 0.96752 0.85110 0.96808 1.22651 0.99467 0.97487 0.94066 0.90106 1.21625 1.01652 0.95039 1.00930 1.21213 0.93920 0.90268 0.87526 0.90785 1.42708 1.05814 1.63486 1.25779 1.19060 0.93643 1.26304 0.99195 0.88995 1.24667 0.97284 0.99763 0.96851 1.69699 1.34776 1.39523 1.13543 0.86599 0.87112 0.77997 0.77103 1.21013 1.20222 1.21620 1.23220 1.01262 0.98082 0.82554 0.92745 0.92569 0.92906 0.91667 0.91517 0.91474 0.91371 0.91043 0.90851 0.92723 0.92675 0.92661 0.91092 0.91601 0.91470 0.93062 0.92500 0.80265 0.92901 0.90924 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.23 5.70 -26.73 -0.15 -1.38 16 3 C -0.11 -1.22 4.66 -26.73 -0.12 -1.35 16 4 C -0.11 -1.36 1.82 -91.77 -0.17 -1.53 16 5 H 0.09 1.20 6.90 -51.93 -0.36 0.84 16 6 C -0.11 -1.26 5.04 -26.73 -0.13 -1.39 16 7 C -0.15 -1.83 9.65 37.16 0.36 -1.47 16 8 C 0.53 8.38 5.98 -10.98 -0.07 8.31 16 9 O -0.55 -10.13 16.28 5.56 0.09 -10.04 16 10 N -0.61 -9.48 3.33 -170.52 -0.57 -10.04 16 11 C 0.11 1.63 6.36 -2.53 -0.02 1.62 16 12 C -0.12 -1.71 3.25 -88.47 -0.29 -2.00 16 13 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 14 C -0.13 -1.76 9.31 37.16 0.35 -1.41 16 15 C 0.18 3.19 3.06 -66.10 -0.20 2.98 16 16 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 17 N -0.74 -15.90 4.98 -51.65 -0.26 -16.16 16 18 C -0.25 -6.60 10.46 -15.06 -0.16 -6.76 16 19 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 20 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 21 N -0.93 -27.88 13.97 55.49 0.78 -27.10 16 22 Si 0.88 21.03 27.74 -169.99 -4.71 16.31 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.07 1.21 5.95 -3.07 -0.02 1.19 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.59 6.45 -51.93 -0.34 0.25 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 35 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.75 7.42 -51.93 -0.39 0.37 16 39 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.07 0.90 7.99 -51.93 -0.41 0.48 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.36 7.83 5.57 -40.82 -0.23 7.60 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 1.25 7.52 -51.93 -0.39 0.86 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -30.04 367.63 -8.23 -38.27 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.75 Total: 7.21 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.35 Total: -3.99 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.05 Total: -53.30 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.04 -8.23 -38.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216104470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.974 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds