Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46993 * 2 1 4 4 C 1.52998 * 109.46907 * 119.99936 * 2 1 3 5 5 C 1.53002 * 109.46760 * 173.71981 * 4 2 1 6 6 C 1.52998 * 109.47273 * 304.48600 * 5 4 2 7 7 N 1.46899 * 109.47233 * 64.48649 * 5 4 2 8 8 C 1.50702 * 109.47089 * 184.48929 * 5 4 2 9 9 O 1.21280 * 120.00176 * 24.99533 * 8 5 4 10 10 N 1.34779 * 120.00093 * 205.00281 * 8 5 4 11 11 C 1.46496 * 120.00225 * 179.97438 * 10 8 5 12 12 H 1.08999 * 109.41091 * 35.13654 * 11 10 8 13 13 C 1.52962 * 109.41642 * 154.99668 * 11 10 8 14 14 C 1.53219 * 109.40696 * 183.63141 * 13 11 10 15 15 C 1.51260 * 108.53872 * 305.37460 * 14 13 11 16 16 C 1.37879 * 120.84918 * 231.32165 * 15 14 13 17 17 N 1.31516 * 119.99941 * 175.05309 * 16 15 14 18 18 Si 1.86800 * 120.00112 * 355.05357 * 16 15 14 19 19 H 1.48496 * 109.47057 * 59.99618 * 18 16 15 20 20 H 1.48501 * 109.47102 * 299.99990 * 18 16 15 21 21 H 1.48505 * 109.47204 * 179.97438 * 18 16 15 22 22 C 1.51276 * 118.30085 * 51.59751 * 15 14 13 23 23 C 1.52955 * 109.35308 * 275.31329 * 11 10 8 24 24 H 1.09001 * 109.47259 * 299.99771 * 1 2 3 25 25 H 1.08998 * 109.47375 * 60.00543 * 1 2 3 26 26 H 1.09004 * 109.46987 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46923 * 239.99838 * 2 1 3 28 28 H 1.09003 * 109.47143 * 188.96954 * 3 2 1 29 29 H 1.09002 * 109.47067 * 308.96029 * 3 2 1 30 30 H 1.08995 * 109.47357 * 68.96017 * 3 2 1 31 31 H 1.08998 * 109.47576 * 53.71912 * 4 2 1 32 32 H 1.09002 * 109.47267 * 293.71437 * 4 2 1 33 33 H 1.09008 * 109.47096 * 300.00225 * 6 5 4 34 34 H 1.08998 * 109.47285 * 60.00102 * 6 5 4 35 35 H 1.09001 * 109.47586 * 180.02562 * 6 5 4 36 36 H 1.00894 * 110.99955 * 60.00380 * 7 5 4 37 37 H 1.00900 * 110.99897 * 183.95290 * 7 5 4 38 38 H 0.97005 * 119.99871 * 359.97438 * 10 8 5 39 39 H 1.09005 * 109.48100 * 63.65069 * 13 11 10 40 40 H 1.09001 * 109.49210 * 303.62605 * 13 11 10 41 41 H 1.08999 * 109.62942 * 185.65554 * 14 13 11 42 42 H 1.09008 * 109.78272 * 65.18114 * 14 13 11 43 43 H 0.97003 * 120.00355 * 5.36354 * 17 16 15 44 44 H 1.08996 * 109.62195 * 68.12015 * 22 15 14 45 45 H 1.09008 * 109.62316 * 188.68867 * 22 15 14 46 46 H 1.09002 * 109.48577 * 296.30588 * 23 11 10 47 47 H 1.09001 * 109.48252 * 56.34281 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5618 -0.8593 1.1728 6 6 3.9449 -1.5682 -0.1278 7 7 4.1766 0.4745 1.2029 8 6 4.0527 -1.6654 2.3477 9 8 3.3099 -2.4514 2.8966 10 7 5.3172 -1.5129 2.7885 11 6 5.7942 -2.2961 3.9309 12 1 5.3393 -3.2863 3.9066 13 6 7.3157 -2.4336 3.8534 14 6 7.8050 -3.3281 4.9971 15 6 7.2963 -2.7599 6.3033 16 6 8.1558 -2.5296 7.3565 17 7 7.7151 -1.9455 8.4493 18 14 9.9463 -3.0471 7.2313 19 1 10.5848 -2.3477 6.0875 20 1 10.0237 -4.5149 7.0195 21 1 10.6539 -2.6896 8.4870 22 6 5.8194 -2.4568 6.4268 23 6 5.4031 -1.5885 5.2293 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1181 1.4467 -0.1602 29 1 1.5518 2.0004 -0.7991 30 1 1.8132 1.9080 0.9591 31 1 1.5878 -1.7113 1.3073 32 1 1.7714 -0.1466 2.1357 33 1 3.4887 -2.5580 -0.1501 34 1 3.5899 -0.9853 -0.9776 35 1 5.0291 -1.6670 -0.1821 36 1 3.9385 0.9633 2.0528 37 1 5.1774 0.4140 1.0889 38 1 5.9114 -0.8844 2.3492 39 1 7.7746 -1.4487 3.9403 40 1 7.5923 -2.8804 2.8984 41 1 8.8948 -3.3477 5.0060 42 1 7.4217 -4.3399 4.8640 43 1 6.7705 -1.7471 8.5461 44 1 5.2530 -3.3880 6.4222 45 1 5.6330 -1.9162 7.3549 46 1 5.9073 -0.6237 5.2838 47 1 4.3239 -1.4365 5.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220095422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = -69.599257 kcal Electronic energy + Delta-G solvation = -23588.552965 eV Core-core repulsion = 20383.700800 eV Total energy + Delta-G solvation = -3204.852165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33473 -37.78516 -36.58311 -34.40062 -33.58590 -31.44842 -29.75344 -29.65094 -27.16839 -27.01425 -26.83613 -23.47815 -22.14631 -21.33015 -20.05508 -19.76454 -18.98798 -17.31824 -16.51380 -16.26202 -15.76407 -15.30767 -14.71326 -14.50442 -13.89253 -13.81424 -13.64492 -13.55171 -12.95923 -12.90442 -12.46590 -12.32580 -12.23726 -12.14934 -11.85980 -11.70004 -11.68462 -11.41987 -11.14215 -10.88382 -10.74505 -10.73026 -10.67052 -10.51736 -10.23405 -10.11704 -9.97890 -9.64508 -9.45298 -8.75527 -8.53747 -8.44642 -8.26771 -6.47459 -4.06778 2.79941 3.32453 3.36141 3.38929 3.57723 4.26100 4.42984 4.60804 4.61373 4.86220 5.01805 5.07261 5.19410 5.27470 5.49042 5.56144 5.60576 5.63915 5.68869 5.72867 5.74896 5.89503 5.93833 5.99717 6.04068 6.10967 6.18923 6.33348 6.36895 6.38602 6.56207 6.60792 6.65474 6.66729 6.75337 6.86279 6.93557 7.07542 7.10579 7.26310 7.28822 7.54216 7.76735 8.01180 8.26653 8.43842 8.82718 9.56423 10.90181 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036104 B = 0.003636 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.360423 B = 7698.617460 C = 7893.381133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.153 4.153 4 C -0.089 4.089 5 C 0.106 3.894 6 C -0.139 4.139 7 N -0.821 5.821 8 C 0.478 3.522 9 O -0.539 6.539 10 N -0.725 5.725 11 C 0.156 3.844 12 H 0.076 0.924 13 C -0.112 4.112 14 C -0.003 4.003 15 C -0.570 4.570 16 C 0.035 3.965 17 N -0.906 5.906 18 Si 1.063 2.937 19 H -0.286 1.286 20 H -0.285 1.285 21 H -0.287 1.287 22 C 0.004 3.996 23 C -0.110 4.110 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.348 0.652 37 H 0.338 0.662 38 H 0.389 0.611 39 H 0.055 0.945 40 H 0.037 0.963 41 H 0.029 0.971 42 H 0.014 0.986 43 H 0.272 0.728 44 H 0.008 0.992 45 H 0.037 0.963 46 H 0.048 0.952 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 5.252 -17.778 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.210 4.210 4 C -0.127 4.127 5 C 0.010 3.990 6 C -0.196 4.196 7 N -0.354 5.354 8 C 0.262 3.738 9 O -0.414 6.414 10 N -0.376 5.376 11 C 0.053 3.947 12 H 0.094 0.906 13 C -0.151 4.151 14 C -0.041 4.041 15 C -0.589 4.589 16 C -0.170 4.170 17 N -0.542 5.542 18 Si 0.892 3.108 19 H -0.212 1.212 20 H -0.211 1.211 21 H -0.213 1.213 22 C -0.034 4.034 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.222 0.778 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.033 0.967 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.540 4.861 -17.188 19.022 hybrid contribution -0.713 -0.056 -0.060 0.718 sum -7.253 4.805 -17.248 19.318 Atomic orbital electron populations 1.21882 0.95993 1.01371 1.01422 1.21079 0.94658 0.97385 0.97605 1.22165 1.04547 0.94247 1.00067 1.21499 0.91239 1.01590 0.98386 1.21107 0.96618 0.87945 0.93359 1.21864 1.01616 1.00466 0.95688 1.59273 1.15236 1.16579 1.44293 1.21765 0.82325 0.83975 0.85767 1.90687 1.55110 1.37139 1.58502 1.46470 1.12819 1.44041 1.34255 1.20993 0.94923 0.94663 0.84101 0.90586 1.21854 0.93274 1.01257 0.98705 1.19494 0.95908 0.94718 0.93972 1.21020 0.93656 1.45912 0.98347 1.25779 1.05489 0.93461 0.92320 1.70821 1.17822 1.37044 1.28530 0.83604 0.75010 0.76556 0.75663 1.21248 1.21117 1.21275 1.19479 0.95945 0.94455 0.93563 1.21957 0.97565 0.99441 0.95923 0.92946 0.92963 0.93030 0.91176 0.88248 0.94791 0.93830 0.90516 0.91857 0.91557 0.90204 0.92380 0.83797 0.84818 0.77797 0.92594 0.94476 0.95218 0.96748 0.91518 0.97375 0.94407 0.93340 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.18 37.16 0.34 -0.99 16 2 C -0.09 -0.84 2.63 -90.62 -0.24 -1.07 16 3 C -0.15 -1.38 8.23 37.16 0.31 -1.08 16 4 C -0.09 -1.02 3.67 -26.73 -0.10 -1.12 16 5 C 0.11 1.17 0.85 -132.75 -0.11 1.06 16 6 C -0.14 -1.34 8.25 37.16 0.31 -1.04 16 7 N -0.82 -7.15 5.21 -0.19 0.00 -7.15 16 8 C 0.48 7.40 6.63 -10.98 -0.07 7.32 16 9 O -0.54 -10.79 15.66 5.56 0.09 -10.70 16 10 N -0.73 -10.93 4.97 -53.85 -0.27 -11.19 16 11 C 0.16 3.03 2.35 -67.97 -0.16 2.87 16 12 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 13 C -0.11 -2.16 5.40 -26.64 -0.14 -2.31 16 14 C 0.00 -0.06 5.56 -27.50 -0.15 -0.21 16 15 C -0.57 -14.92 5.50 -98.92 -0.54 -15.46 16 16 C 0.03 0.95 5.46 -17.82 -0.10 0.86 16 17 N -0.91 -26.65 13.66 55.43 0.76 -25.89 16 18 Si 1.06 24.47 27.19 -169.99 -4.62 19.84 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.00 0.09 5.99 -27.26 -0.16 -0.07 16 23 C -0.11 -2.39 5.51 -26.41 -0.15 -2.54 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.63 6.00 -51.93 -0.31 0.32 16 28 H 0.10 0.90 5.71 -51.93 -0.30 0.60 16 29 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 30 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.08 1.00 7.70 -51.93 -0.40 0.60 16 32 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 34 H 0.08 0.67 6.21 -51.93 -0.32 0.35 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.35 3.18 8.99 -39.30 -0.35 2.83 16 37 H 0.34 2.54 7.58 -39.29 -0.30 2.24 16 38 H 0.39 4.65 7.08 -40.82 -0.29 4.37 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.65 5.25 -51.93 -0.27 0.38 16 42 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 43 H 0.27 7.98 6.36 -40.82 -0.26 7.72 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.04 1.00 5.80 -51.92 -0.30 0.70 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -30.09 351.35 -7.93 -38.03 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.21 Total: 5.57 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.97 Total: -13.79 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.49 Total: -44.24 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.62 Total: 19.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.09 -7.93 -38.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.571 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds