Wall clock time and date at job start Tue Mar 31 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47192 * 305.00392 * 4 3 2 6 6 C 1.53000 * 109.47060 * 65.00062 * 4 3 2 7 7 C 1.50695 * 109.46942 * 185.00287 * 4 3 2 8 8 O 1.21283 * 120.00179 * 359.97438 * 7 4 3 9 9 N 1.34779 * 120.00031 * 180.02562 * 7 4 3 10 10 C 1.46494 * 120.00442 * 179.97438 * 9 7 4 11 11 H 1.09004 * 109.47299 * 34.99660 * 10 9 7 12 12 C 1.53002 * 109.47403 * 275.00033 * 10 9 7 13 13 C 1.53001 * 109.47335 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46807 * 60.00044 * 13 12 10 15 15 C 1.53006 * 109.47177 * 299.99533 * 14 13 12 16 16 C 1.53000 * 109.47433 * 154.99521 * 10 9 7 17 17 H 1.09001 * 109.46985 * 60.00289 * 16 10 9 18 18 N 1.46502 * 109.47216 * 300.00324 * 16 10 9 19 19 C 1.36940 * 119.99766 * 154.99749 * 18 16 10 20 20 H 1.08001 * 119.99771 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99598 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00271 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99593 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47370 * 60.00712 * 23 21 19 25 25 H 1.48504 * 109.46717 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47339 * 300.00230 * 23 21 19 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 33 33 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 34 34 H 1.09000 * 109.47227 * 300.00275 * 6 4 3 35 35 H 1.09006 * 109.46717 * 59.99823 * 6 4 3 36 36 H 1.08995 * 109.47185 * 179.97438 * 6 4 3 37 37 H 0.97004 * 119.99958 * 359.97438 * 9 7 4 38 38 H 1.09001 * 109.46868 * 299.99621 * 12 10 9 39 39 H 1.09000 * 109.46712 * 59.99461 * 12 10 9 40 40 H 1.09001 * 109.47103 * 299.99808 * 13 12 10 41 41 H 1.08997 * 109.46913 * 180.02562 * 13 12 10 42 42 H 1.09001 * 109.47016 * 180.02562 * 14 13 12 43 43 H 1.08992 * 109.47600 * 59.99763 * 14 13 12 44 44 H 1.09001 * 109.47293 * 300.00579 * 15 14 13 45 45 H 1.09000 * 109.46751 * 180.02562 * 15 14 13 46 46 H 0.97000 * 119.99991 * 334.99785 * 18 16 10 47 47 H 0.97000 * 120.00251 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 4.0723 2.8579 0.1233 8 8 3.2842 3.7763 0.2036 9 7 5.3974 3.1033 0.1437 10 6 5.8858 4.4792 0.2636 11 1 5.2137 5.0488 0.9055 12 6 5.9362 5.1252 -1.1225 13 6 6.4458 6.5624 -0.9972 14 6 7.8487 6.5547 -0.3868 15 6 7.7982 5.9089 0.9994 16 6 7.2888 4.4711 0.8738 17 1 7.9609 3.9017 0.2319 18 7 7.2405 3.8527 2.2010 19 6 8.3628 3.2694 2.7258 20 1 9.2836 3.2656 2.1615 21 6 8.3171 2.6839 3.9836 22 7 7.1951 2.6889 4.6715 23 14 9.8479 1.8876 4.6992 24 1 10.9258 2.9024 4.8149 25 1 9.5378 1.3387 6.0438 26 1 10.2968 0.7881 3.8077 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.7160 -0.1906 -1.3979 35 1 3.7156 1.4228 -2.1499 36 1 5.1694 0.8335 -1.3090 37 1 6.0278 2.3689 0.0790 38 1 6.6084 4.5557 -1.7644 39 1 4.9367 5.1309 -1.5572 40 1 5.7733 7.1316 -0.3554 41 1 6.4812 7.0227 -1.9846 42 1 8.2115 7.5786 -0.2971 43 1 8.5211 5.9855 -1.0285 44 1 7.1258 6.4781 1.6412 45 1 8.7977 5.9038 1.4344 46 1 6.4135 3.8564 2.7080 47 1 7.1633 2.2801 5.5506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225439280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:21 Heat of formation + Delta-G solvation = -70.510515 kcal Electronic energy + Delta-G solvation = -23405.703848 eV Core-core repulsion = 20200.812168 eV Total energy + Delta-G solvation = -3204.891680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85410 -38.03325 -35.77375 -34.03318 -33.69674 -31.94774 -31.12592 -29.16922 -27.64272 -26.57950 -24.06892 -23.66711 -22.01709 -21.07417 -20.68299 -19.81933 -19.08725 -17.22717 -16.56370 -15.98435 -15.47081 -15.00820 -14.58210 -14.20930 -14.02577 -13.91215 -13.64868 -13.39082 -13.06280 -12.93446 -12.69837 -12.50671 -12.24980 -12.09638 -12.00197 -11.83954 -11.19192 -11.07325 -10.93975 -10.90757 -10.81795 -10.76200 -10.72501 -10.52476 -10.48124 -10.31806 -10.19343 -9.73656 -9.62408 -9.26991 -8.90500 -8.48780 -6.99013 -5.78582 -3.08275 3.09180 3.40774 3.45920 3.46958 3.62378 4.54965 4.80980 4.85424 4.94692 5.08742 5.14500 5.21133 5.25209 5.31732 5.36109 5.52225 5.53317 5.63078 5.66852 5.73527 5.80345 5.84679 5.85043 5.87474 5.91406 5.97832 6.00032 6.01666 6.09298 6.13064 6.14286 6.34625 6.36863 6.44753 6.47138 6.51056 6.55240 6.60316 6.88321 6.95725 7.13002 7.66131 8.02505 8.38734 8.70184 9.50316 10.07234 10.42586 11.43374 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.005514 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.511016 B = 5077.025977 C = 6958.377844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.114 4.114 5 H 0.099 0.901 6 C -0.142 4.142 7 C 0.519 3.481 8 O -0.553 6.553 9 N -0.707 5.707 10 C 0.140 3.860 11 H 0.082 0.918 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.722 5.722 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 -1.514 -13.504 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.135 4.135 5 H 0.117 0.883 6 C -0.200 4.200 7 C 0.305 3.695 8 O -0.431 6.431 9 N -0.356 5.356 10 C 0.035 3.965 11 H 0.100 0.900 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.063 3.937 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.900 -0.956 -13.371 15.077 hybrid contribution 1.000 -0.755 0.755 1.463 sum -5.900 -1.712 -12.616 14.032 Atomic orbital electron populations 1.21758 0.96004 1.01241 1.01881 1.21608 0.95778 0.96979 1.02044 1.21393 0.92603 0.96276 1.03302 1.21329 0.97519 0.94173 1.00465 0.88333 1.21799 1.01245 1.01031 0.95907 1.20534 0.82445 0.90978 0.75555 1.90646 1.55506 1.46497 1.50497 1.45921 1.06711 1.09527 1.73435 1.21268 0.97041 0.82270 0.95940 0.89973 1.21861 1.00992 0.96061 0.97273 1.21471 0.97132 0.96285 1.00295 1.21577 0.96344 1.00139 0.97659 1.22230 1.02066 0.97943 0.95181 1.20466 0.92150 0.92582 0.88520 0.93267 1.42409 1.12039 1.66976 1.14791 1.19164 0.90160 1.28795 0.99127 0.91284 1.24725 0.96928 1.01669 0.97320 1.69659 1.25060 1.49812 1.13251 0.86312 0.82613 0.79209 0.78273 1.21319 1.21759 1.21326 0.93004 0.92677 0.92876 0.91912 0.91912 0.91640 0.91117 0.91529 0.92412 0.92129 0.76347 0.92144 0.92038 0.92013 0.92464 0.92727 0.92419 0.92492 0.91663 0.78139 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.29 5.69 -26.73 -0.15 -1.45 16 3 C -0.10 -1.24 4.03 -26.73 -0.11 -1.35 16 4 C -0.11 -1.51 2.72 -91.78 -0.25 -1.76 16 5 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 6 C -0.14 -1.51 8.84 37.16 0.33 -1.18 16 7 C 0.52 8.74 7.12 -10.99 -0.08 8.66 16 8 O -0.55 -11.08 15.58 5.56 0.09 -11.00 16 9 N -0.71 -11.66 4.80 -53.81 -0.26 -11.92 16 10 C 0.14 2.42 1.98 -67.93 -0.13 2.29 16 11 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 12 C -0.12 -1.78 5.49 -26.73 -0.15 -1.93 16 13 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 14 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 15 C -0.13 -2.34 5.50 -26.70 -0.15 -2.48 16 16 C 0.17 3.29 2.30 -67.90 -0.16 3.13 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.72 -17.31 4.95 -53.40 -0.26 -17.58 16 19 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 23 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 34 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 37 H 0.40 6.31 8.02 -40.82 -0.33 5.98 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -30.12 368.52 -9.05 -39.18 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -8.83 Total: 13.32 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.04 Total: -7.52 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.20 Total: -56.40 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.12 -9.05 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225439280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.334 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds