Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46690 * 54.99871 * 4 3 2 6 6 C 1.52995 * 109.47028 * 294.99843 * 4 3 2 7 7 C 1.50698 * 109.47004 * 174.99522 * 4 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 H 1.08999 * 109.47480 * 35.27807 * 10 9 7 12 12 C 1.52999 * 109.47136 * 275.27771 * 10 9 7 13 13 C 1.53005 * 109.47303 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46840 * 59.99992 * 13 12 10 15 15 C 1.52999 * 109.47179 * 300.00084 * 14 13 12 16 16 C 1.52992 * 109.46921 * 60.00100 * 15 14 13 17 17 H 1.08999 * 109.47499 * 60.00085 * 16 15 14 18 18 N 1.46505 * 109.47408 * 179.97438 * 16 15 14 19 19 C 1.36938 * 120.00115 * 275.00713 * 18 16 15 20 20 H 1.07996 * 119.99950 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99900 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00190 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 89.99988 * 23 21 19 25 25 H 1.48503 * 109.47271 * 209.99684 * 23 21 19 26 26 H 1.48503 * 109.47110 * 330.00195 * 23 21 19 27 27 H 1.09007 * 109.47064 * 300.00271 * 1 2 3 28 28 H 1.08999 * 109.47090 * 60.00078 * 1 2 3 29 29 H 1.08996 * 109.47584 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47220 * 239.99493 * 2 1 3 31 31 H 1.08999 * 109.47090 * 119.99921 * 2 1 3 32 32 H 1.08998 * 109.47393 * 59.99600 * 3 2 1 33 33 H 1.09007 * 109.46792 * 299.99694 * 3 2 1 34 34 H 1.08995 * 109.47139 * 300.00141 * 6 4 3 35 35 H 1.09003 * 109.47199 * 59.99964 * 6 4 3 36 36 H 1.09001 * 109.46983 * 179.97438 * 6 4 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 38 38 H 1.09006 * 109.47500 * 299.99940 * 12 10 9 39 39 H 1.08999 * 109.47488 * 60.00276 * 12 10 9 40 40 H 1.08999 * 109.47389 * 300.00082 * 13 12 10 41 41 H 1.09000 * 109.47657 * 179.97438 * 13 12 10 42 42 H 1.09005 * 109.46967 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.47442 * 60.00260 * 14 13 12 44 44 H 1.08999 * 109.46965 * 299.99858 * 15 14 13 45 45 H 1.09006 * 109.47222 * 180.02562 * 15 14 13 46 46 H 0.97004 * 120.00056 * 94.99253 * 18 16 15 47 47 H 0.97000 * 120.00145 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0794 0.8331 1.3083 7 6 4.0724 2.8579 -0.1233 8 8 3.2843 3.7763 -0.2037 9 7 5.3975 3.1032 -0.1437 10 6 5.8859 4.4785 -0.2703 11 1 5.2151 5.1528 0.2622 12 6 5.9333 4.8689 -1.7488 13 6 6.4439 6.3052 -1.8811 14 6 7.8484 6.4042 -1.2822 15 6 7.8010 6.0138 0.1964 16 6 7.2903 4.5777 0.3285 17 1 7.9608 3.9031 -0.2040 18 7 7.2455 4.2035 1.7443 19 6 8.3691 3.7215 2.3610 20 1 9.2882 3.6168 1.8037 21 6 8.3268 3.3675 3.7026 22 7 7.2068 3.4957 4.3820 23 14 9.8592 2.7093 4.5437 24 1 10.6302 3.8390 5.1222 25 1 9.4658 1.7725 5.6268 26 1 10.7000 1.9933 3.5509 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.7157 1.4227 2.1498 35 1 3.7160 -0.1907 1.3979 36 1 5.1694 0.8327 1.3085 37 1 6.0278 2.3687 -0.0790 38 1 6.6041 4.1947 -2.2814 39 1 4.9328 4.7980 -2.1757 40 1 5.7735 6.9797 -1.3485 41 1 6.4782 6.5832 -2.9345 42 1 8.2124 7.4273 -1.3768 43 1 8.5189 5.7297 -1.8147 44 1 7.1306 6.6883 0.7289 45 1 8.8015 6.0847 0.6232 46 1 6.4199 4.2975 2.2449 47 1 7.1772 3.2487 5.3195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225439281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = -70.459314 kcal Electronic energy + Delta-G solvation = -23477.732091 eV Core-core repulsion = 20272.842631 eV Total energy + Delta-G solvation = -3204.889460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.84569 -38.02856 -35.75495 -34.03458 -33.69030 -31.89991 -31.12675 -29.16004 -27.64184 -26.45962 -24.04089 -23.67817 -22.00981 -21.06725 -20.66138 -19.84977 -19.05030 -17.23849 -16.53594 -15.95976 -15.45028 -15.01883 -14.56925 -14.20501 -13.96188 -13.74967 -13.71459 -13.51002 -12.97792 -12.93769 -12.66680 -12.41065 -12.11475 -12.07463 -12.02926 -11.75849 -11.14612 -11.07712 -10.93554 -10.91466 -10.79581 -10.74281 -10.68314 -10.53224 -10.46389 -10.30761 -10.17128 -9.73603 -9.62460 -9.26187 -8.90775 -8.48540 -6.98669 -5.78637 -3.08144 3.08616 3.40338 3.45868 3.47524 3.63498 4.54838 4.83601 4.87859 4.97627 5.08711 5.15980 5.24139 5.27338 5.35199 5.40509 5.52510 5.54314 5.66181 5.73504 5.74679 5.80360 5.85851 5.89692 5.91557 5.97706 5.99595 6.00959 6.08473 6.13180 6.17411 6.25542 6.34972 6.45489 6.47114 6.51050 6.51918 6.55762 6.60255 6.88190 6.95705 7.13002 7.66753 8.02634 8.38572 8.70333 9.50401 10.07285 10.42791 11.43249 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.005699 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.878498 B = 4911.727497 C = 6955.130030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.109 4.109 5 H 0.090 0.910 6 C -0.144 4.144 7 C 0.518 3.482 8 O -0.553 6.553 9 N -0.707 5.707 10 C 0.140 3.860 11 H 0.082 0.918 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.903 3.097 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 -3.805 -12.323 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.131 4.131 5 H 0.108 0.892 6 C -0.202 4.202 7 C 0.304 3.696 8 O -0.432 6.432 9 N -0.356 5.356 10 C 0.035 3.965 11 H 0.100 0.900 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.063 3.937 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.577 5.577 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.904 -3.240 -12.294 14.467 hybrid contribution 1.001 -0.602 0.826 1.431 sum -5.903 -3.843 -11.468 13.459 Atomic orbital electron populations 1.21759 0.96017 1.01221 1.01897 1.21603 0.95757 0.96999 1.02000 1.21405 0.92709 0.96235 1.03313 1.21313 0.97418 0.93855 1.00495 0.89202 1.21805 1.01982 1.00628 0.95754 1.20574 0.82444 0.91093 0.75505 1.90646 1.55513 1.46457 1.50540 1.45922 1.06715 1.09587 1.73380 1.21265 0.97036 0.83102 0.95103 0.89972 1.21869 1.00995 0.96727 0.96658 1.21471 0.97119 0.96483 1.00099 1.21579 0.96330 1.00568 0.97249 1.22219 1.02063 0.99002 0.94129 1.20453 0.92119 0.93928 0.87217 0.93280 1.42410 1.12082 1.76848 1.04829 1.19200 0.90178 1.34884 0.92885 0.91268 1.24714 0.96889 1.02288 0.96719 1.69671 1.25063 1.54083 1.08849 0.86253 0.82582 0.78392 0.79299 1.21802 1.21861 1.20824 0.92685 0.92860 0.93021 0.92252 0.91637 0.91305 0.91466 0.91756 0.91885 0.91500 0.76346 0.92148 0.92030 0.92006 0.92464 0.92729 0.92428 0.92499 0.91663 0.78126 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.13 -1.28 5.69 -26.73 -0.15 -1.43 16 3 C -0.10 -1.25 4.03 -26.73 -0.11 -1.36 16 4 C -0.11 -1.45 2.72 -91.78 -0.25 -1.70 16 5 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.14 -1.97 8.84 37.16 0.33 -1.64 16 7 C 0.52 8.71 7.12 -10.99 -0.08 8.63 16 8 O -0.55 -11.08 15.58 5.55 0.09 -10.99 16 9 N -0.71 -11.63 4.80 -53.81 -0.26 -11.89 16 10 C 0.14 2.42 1.98 -67.93 -0.13 2.28 16 11 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 12 C -0.12 -1.79 5.49 -26.73 -0.15 -1.94 16 13 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 14 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 15 C -0.13 -2.33 5.50 -26.74 -0.15 -2.47 16 16 C 0.17 3.27 2.29 -67.93 -0.16 3.12 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.72 -17.15 4.95 -53.43 -0.26 -17.42 16 19 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 23 Si 0.90 21.80 29.55 -169.99 -5.02 16.78 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 36 H 0.07 0.98 7.56 -51.93 -0.39 0.58 16 37 H 0.40 6.28 8.02 -40.82 -0.33 5.95 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -29.78 368.52 -9.05 -38.84 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -8.83 Total: 13.62 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.04 Total: -7.88 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.20 Total: -55.92 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.78 -9.05 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225439281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.623 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds