Wall clock time and date at job start Tue Mar 31 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 C 1.52998 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47471 * 304.99748 * 4 3 2 6 6 C 1.52994 * 109.47114 * 65.00258 * 4 3 2 7 7 C 1.53007 * 109.46989 * 185.00092 * 4 3 2 8 8 C 1.50696 * 109.47054 * 174.99882 * 7 4 3 9 9 O 1.21282 * 120.00212 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99928 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00030 * 354.97975 * 10 8 7 12 12 C 1.46500 * 120.00343 * 174.98650 * 10 8 7 13 13 C 1.53004 * 109.46917 * 275.14172 * 12 10 8 14 14 H 1.09004 * 112.73525 * 44.01555 * 13 12 10 15 15 C 1.53496 * 113.51847 * 273.22879 * 13 12 10 16 16 C 1.53756 * 83.25504 * 218.97114 * 15 13 12 17 17 N 1.47060 * 113.46859 * 174.76182 * 13 12 10 18 18 C 1.36933 * 136.05824 * 321.92633 * 17 13 12 19 19 H 1.08000 * 120.00214 * 355.14634 * 18 17 13 20 20 C 1.38812 * 120.00004 * 175.42533 * 18 17 13 21 21 N 1.31624 * 119.99965 * 359.72528 * 20 18 17 22 22 Si 1.86797 * 120.00275 * 179.72212 * 20 18 17 23 23 H 1.48497 * 109.46965 * 59.99959 * 22 20 18 24 24 H 1.48502 * 109.47524 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47361 * 300.00259 * 22 20 18 26 26 H 1.08999 * 109.47145 * 59.99888 * 1 2 3 27 27 H 1.08993 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46990 * 299.99848 * 1 2 3 29 29 H 1.08998 * 109.46990 * 240.00152 * 2 1 3 30 30 H 1.08999 * 109.47145 * 120.00112 * 2 1 3 31 31 H 1.08998 * 109.47039 * 60.00182 * 3 2 1 32 32 H 1.08999 * 109.47177 * 300.00093 * 3 2 1 33 33 H 1.09009 * 109.47236 * 179.97438 * 6 4 3 34 34 H 1.08991 * 109.47086 * 299.99469 * 6 4 3 35 35 H 1.09001 * 109.47183 * 60.00188 * 6 4 3 36 36 H 1.09004 * 109.47127 * 55.00261 * 7 4 3 37 37 H 1.08995 * 109.47007 * 295.00290 * 7 4 3 38 38 H 1.09005 * 109.47620 * 270.00388 * 11 10 8 39 39 H 1.09006 * 109.46970 * 29.99961 * 11 10 8 40 40 H 1.08998 * 109.47386 * 150.00030 * 11 10 8 41 41 H 1.08995 * 109.47348 * 155.13986 * 12 10 8 42 42 H 1.09000 * 109.47025 * 35.14035 * 12 10 8 43 43 H 1.08995 * 114.20707 * 332.72828 * 15 13 12 44 44 H 1.09000 * 114.20928 * 105.35969 * 15 13 12 45 45 H 1.09001 * 113.46902 * 271.50285 * 16 15 13 46 46 H 1.08999 * 113.55133 * 140.98363 * 16 15 13 47 47 H 0.96998 * 120.00100 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0800 2.8795 0.1264 8 6 5.5818 2.8704 0.2506 9 8 6.1850 1.8183 0.2391 10 7 6.2548 4.0316 0.3744 11 6 5.5397 5.3066 0.2780 12 6 7.7014 4.0189 0.6052 13 6 7.9777 3.8653 2.1022 14 1 7.3481 3.1091 2.5714 15 6 7.9993 5.1993 2.8612 16 6 9.1658 4.5423 3.6174 17 7 9.4056 3.7193 2.4224 18 6 10.4829 3.0893 1.8590 19 1 10.3486 2.4642 0.9886 20 6 11.7469 3.2495 2.4100 21 7 11.9106 4.0113 3.4708 22 14 13.2154 2.3839 1.6461 23 1 13.3777 2.8322 0.2398 24 1 14.4411 2.7152 2.4164 25 1 12.9949 0.9156 1.6752 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1706 0.8330 -1.3061 34 1 3.7172 -0.1910 -1.3959 35 1 3.7176 1.4220 -2.1484 36 1 3.6451 3.3432 1.0118 37 1 3.7920 3.4460 -0.7591 38 1 5.5243 5.6370 -0.7607 39 1 4.5172 5.1774 0.6332 40 1 6.0451 6.0539 0.8896 41 1 8.1343 4.9540 0.2500 42 1 8.1481 3.1837 0.0657 43 1 8.2842 6.0562 2.2508 44 1 7.1149 5.3804 3.4720 45 1 8.8496 3.9647 4.4860 46 1 9.9815 5.2296 3.8418 47 1 12.7939 4.1236 3.8556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231129328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:31 Heat of formation + Delta-G solvation = 0.055617 kcal Electronic energy + Delta-G solvation = -22901.878538 eV Core-core repulsion = 19700.046835 eV Total energy + Delta-G solvation = -3201.831703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.93538 -38.09127 -36.78625 -35.09918 -32.83913 -32.12071 -29.26786 -27.86465 -27.51327 -26.70052 -25.83778 -23.40102 -22.69809 -21.64986 -20.14680 -19.22775 -18.68028 -16.92509 -16.58335 -15.96459 -15.73249 -15.41109 -14.68315 -14.43771 -14.11957 -13.85719 -13.65295 -13.45278 -13.17289 -12.95809 -12.59254 -12.49282 -12.34957 -12.04050 -11.83260 -11.68245 -11.58908 -11.47767 -11.09379 -11.02946 -10.80408 -10.77075 -10.70621 -10.64936 -10.53814 -10.39863 -9.80255 -9.74463 -9.59112 -9.25407 -8.72338 -8.19251 -6.80886 -5.69660 -3.02990 2.90262 3.26287 3.44776 3.48527 3.50343 4.49271 4.54423 4.65640 4.73050 4.96528 4.98059 5.10889 5.16842 5.26578 5.37170 5.39323 5.42976 5.53314 5.54309 5.55203 5.58881 5.63486 5.70978 5.74962 5.79085 5.85023 5.86014 6.01716 6.03806 6.05202 6.14465 6.23462 6.34833 6.37125 6.47658 6.53362 6.62111 6.74679 6.93557 7.29345 7.49078 7.64478 7.68220 8.06219 8.48880 9.11033 9.77396 10.71439 11.47017 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.003448 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.457120 B = 8117.627515 C = 8666.984056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.077 4.077 5 H 0.078 0.922 6 C -0.153 4.153 7 C -0.134 4.134 8 C 0.507 3.493 9 O -0.531 6.531 10 N -0.614 5.614 11 C 0.079 3.921 12 C 0.117 3.883 13 C 0.135 3.865 14 H 0.042 0.958 15 C -0.166 4.166 16 C 0.148 3.852 17 N -0.600 5.600 18 C -0.214 4.214 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.020 0.980 46 H 0.077 0.923 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.818 1.156 -7.211 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.096 4.096 5 H 0.096 0.904 6 C -0.210 4.210 7 C -0.175 4.175 8 C 0.295 3.705 9 O -0.408 6.408 10 N -0.348 5.348 11 C -0.065 4.065 12 C -0.006 4.006 13 C 0.027 3.973 14 H 0.059 0.941 15 C -0.205 4.205 16 C 0.023 3.977 17 N -0.326 5.326 18 C -0.341 4.341 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.095 0.905 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.101 0.506 -7.250 22.317 hybrid contribution 0.770 -0.416 -0.208 0.900 sum -20.330 0.090 -7.458 21.655 Atomic orbital electron populations 1.21779 0.96157 1.01415 1.01602 1.21578 0.95423 0.97085 1.02362 1.21673 0.94863 0.96871 1.01760 1.20916 0.94203 0.94529 0.99956 0.90352 1.21983 1.03331 0.99971 0.95741 1.21778 0.92732 0.99350 1.03591 1.20655 0.89897 0.83555 0.76397 1.90693 1.70214 1.30521 1.49358 1.47947 1.09301 1.05849 1.71710 1.21781 0.97197 0.86071 1.01401 1.21838 0.77702 1.02831 0.98279 1.22402 0.88168 0.94230 0.92481 0.94079 1.23764 0.99242 0.97068 1.00400 1.22136 0.93879 0.92308 0.89408 1.45659 1.01694 1.60835 1.24408 1.18895 0.84108 1.22279 1.08827 0.90311 1.24776 0.97211 1.00392 0.98094 1.69818 1.21905 1.41820 1.23326 0.86201 0.82048 0.79226 0.78326 1.21054 1.21597 1.21182 0.92917 0.92958 0.92866 0.91701 0.91979 0.92090 0.92086 0.90578 0.92896 0.93659 0.89191 0.89403 0.92993 0.91407 0.90710 0.90483 0.90271 0.90593 0.92997 0.96232 0.90520 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.05 5.69 -26.73 -0.15 -1.20 16 3 C -0.11 -0.96 4.68 -26.73 -0.13 -1.08 16 4 C -0.08 -0.84 2.04 -90.62 -0.18 -1.03 16 5 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 6 C -0.15 -1.78 8.69 37.15 0.32 -1.46 16 7 C -0.13 -1.43 3.63 -27.88 -0.10 -1.53 16 8 C 0.51 7.82 7.35 -10.99 -0.08 7.74 16 9 O -0.53 -10.52 13.60 5.56 0.08 -10.45 16 10 N -0.61 -9.09 2.88 -181.57 -0.52 -9.62 16 11 C 0.08 0.79 10.24 59.85 0.61 1.41 16 12 C 0.12 2.19 5.34 -4.04 -0.02 2.17 16 13 C 0.14 2.90 4.27 -72.41 -0.31 2.59 16 14 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.17 -3.17 8.03 -26.08 -0.21 -3.38 16 16 C 0.15 3.61 7.53 -8.38 -0.06 3.55 16 17 N -0.60 -15.95 3.64 -176.85 -0.64 -16.59 16 18 C -0.21 -6.21 10.55 -15.06 -0.16 -6.37 16 19 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.00 11.42 55.49 0.63 -27.37 16 22 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.55 6.57 -51.93 -0.34 0.20 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.13 5.95 -51.92 -0.31 0.82 16 34 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.81 7.58 -51.93 -0.39 0.41 16 37 H 0.09 0.76 8.05 -51.93 -0.42 0.35 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 40 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.08 1.38 7.77 -51.93 -0.40 0.97 16 42 H 0.08 1.73 7.51 -51.93 -0.39 1.34 16 43 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 2.04 6.92 -51.93 -0.36 1.69 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -33.45 368.90 -8.85 -42.30 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -8.73 Total: -2.06 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.20 Total: 0.36 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.53 Total: -53.58 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.45 -8.85 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231129328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.357 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds