Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47191 * 2 1 4 4 C 1.53002 * 109.47191 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47066 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47053 * 304.99716 * 5 4 3 7 7 C 1.53000 * 109.47145 * 65.00191 * 5 4 3 8 8 C 1.50694 * 109.46621 * 185.00098 * 5 4 3 9 9 O 1.21286 * 120.00371 * 352.32684 * 8 5 4 10 10 N 1.34777 * 119.99954 * 172.33109 * 8 5 4 11 11 C 1.46504 * 119.99936 * 5.46594 * 10 8 5 12 12 C 1.46497 * 120.00482 * 185.46708 * 10 8 5 13 13 C 1.52994 * 109.47355 * 265.75231 * 12 10 8 14 14 H 1.09000 * 112.73959 * 316.55958 * 13 12 10 15 15 C 1.53617 * 113.56231 * 87.30776 * 13 12 10 16 16 C 1.53490 * 83.30776 * 140.82762 * 15 13 12 17 17 N 1.47070 * 88.05098 * 333.97879 * 16 15 13 18 18 C 1.36940 * 136.06228 * 207.12856 * 17 16 15 19 19 H 1.07993 * 119.99819 * 171.42197 * 18 17 16 20 20 C 1.38810 * 119.99515 * 351.41889 * 18 17 16 21 21 N 1.31621 * 119.99591 * 162.90308 * 20 18 17 22 22 Si 1.86798 * 120.00378 * 342.90584 * 20 18 17 23 23 H 1.48505 * 109.46938 * 87.76414 * 22 20 18 24 24 H 1.48500 * 109.46974 * 207.76226 * 22 20 18 25 25 H 1.48500 * 109.47078 * 327.76461 * 22 20 18 26 26 H 1.08994 * 109.47337 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47184 * 300.00151 * 1 2 3 28 28 H 1.09004 * 109.46905 * 59.99808 * 1 2 3 29 29 H 1.09002 * 109.46499 * 240.00148 * 2 1 3 30 30 H 1.08993 * 109.46965 * 120.00698 * 2 1 3 31 31 H 1.09006 * 109.46904 * 60.00296 * 3 2 1 32 32 H 1.09004 * 109.47469 * 300.00696 * 3 2 1 33 33 H 1.09002 * 109.46499 * 60.00148 * 4 3 2 34 34 H 1.09004 * 109.46905 * 300.00192 * 4 3 2 35 35 H 1.09000 * 109.46792 * 61.23737 * 7 5 4 36 36 H 1.08995 * 109.47273 * 181.23663 * 7 5 4 37 37 H 1.08998 * 109.46838 * 301.24168 * 7 5 4 38 38 H 1.09000 * 109.47259 * 212.66035 * 11 10 8 39 39 H 1.08999 * 109.47130 * 332.65989 * 11 10 8 40 40 H 1.08998 * 109.46823 * 92.65881 * 11 10 8 41 41 H 1.09002 * 109.47500 * 145.74632 * 12 10 8 42 42 H 1.09006 * 109.46973 * 25.74954 * 12 10 8 43 43 H 1.09001 * 114.20335 * 27.25478 * 15 13 12 44 44 H 1.09004 * 114.23680 * 254.39968 * 15 13 12 45 45 H 1.08998 * 113.46994 * 219.17545 * 16 15 13 46 46 H 1.08997 * 113.47381 * 88.78594 * 16 15 13 47 47 H 0.96995 * 120.00190 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6759 3.5682 1.3079 8 6 5.5818 2.8868 -0.1245 9 8 6.1965 1.8428 -0.0657 10 7 6.2420 4.0484 -0.3010 11 6 5.5145 5.3191 -0.2522 12 6 7.6871 4.0406 -0.5417 13 6 8.4262 4.2254 0.7850 14 1 7.9796 4.9970 1.4122 15 6 8.6876 2.9082 1.5310 16 6 10.0351 3.5679 1.8552 17 7 9.8819 4.3667 0.6299 18 6 10.7239 4.9740 -0.2631 19 1 10.3300 5.3950 -1.1762 20 6 12.0837 5.0484 0.0056 21 7 12.9326 5.3146 -0.9645 22 14 12.7090 4.7706 1.7438 23 1 12.9505 3.3209 1.9571 24 1 13.9775 5.5177 1.9388 25 1 11.6961 5.2522 2.7171 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 4.1289 3.0417 2.1480 36 1 4.0201 4.6024 1.2991 37 1 2.5907 3.5473 1.4085 38 1 5.9804 6.0309 -0.9338 39 1 4.4785 5.1563 -0.5493 40 1 5.5435 5.7156 0.7627 41 1 7.9471 4.8541 -1.2190 42 1 7.9757 3.0893 -0.9890 43 1 8.7619 2.0348 0.8831 44 1 8.0469 2.7506 2.3987 45 1 10.8767 2.8762 1.8199 46 1 10.0181 4.1646 2.7672 47 1 13.8828 5.3662 -0.7769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234040663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = 7.382551 kcal Electronic energy + Delta-G solvation = -23036.953346 eV Core-core repulsion = 19835.439362 eV Total energy + Delta-G solvation = -3201.513984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14410 -38.36158 -36.48359 -35.30041 -33.53933 -32.21422 -29.42469 -28.45418 -28.01742 -26.66156 -25.12690 -23.44799 -22.96829 -21.81984 -20.84772 -19.29057 -18.73521 -17.11494 -16.66927 -16.02000 -15.87038 -15.57864 -15.00817 -14.39387 -14.37457 -13.98258 -13.53818 -13.47823 -13.22267 -13.06880 -12.91104 -12.66816 -12.45148 -12.32040 -11.97657 -11.83995 -11.77619 -11.50562 -11.46532 -11.18710 -11.08878 -11.03367 -10.77926 -10.66633 -10.63890 -10.17400 -10.09758 -9.91980 -9.46159 -9.27445 -8.85231 -8.30609 -7.13421 -5.87537 -3.17601 2.82499 3.17624 3.39716 3.48437 3.49852 4.41555 4.52667 4.59207 4.68291 4.81287 4.88171 4.92382 4.97836 5.06147 5.24431 5.27850 5.33687 5.36373 5.42237 5.42543 5.50240 5.55118 5.63910 5.66395 5.72497 5.76201 5.81043 5.85544 5.93944 5.94648 5.97173 6.01015 6.17686 6.20811 6.25441 6.33923 6.46579 6.53612 6.59018 6.69297 7.17032 7.20186 7.60977 8.36317 8.40836 8.70011 9.67507 10.38087 11.29131 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036775 B = 0.003295 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.211139 B = 8495.990504 C = 8690.878501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.109 4.109 6 H 0.091 0.909 7 C -0.152 4.152 8 C 0.513 3.487 9 O -0.533 6.533 10 N -0.612 5.612 11 C 0.077 3.923 12 C 0.116 3.884 13 C 0.135 3.865 14 H 0.045 0.955 15 C -0.140 4.140 16 C 0.096 3.904 17 N -0.618 5.618 18 C -0.221 4.221 19 H 0.099 0.901 20 C 0.015 3.985 21 N -0.920 5.920 22 Si 0.883 3.117 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.272 1.272 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.039 0.961 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.994 -4.486 3.286 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.131 4.131 6 H 0.109 0.891 7 C -0.209 4.209 8 C 0.301 3.699 9 O -0.409 6.409 10 N -0.345 5.345 11 C -0.067 4.067 12 C -0.007 4.007 13 C 0.027 3.973 14 H 0.062 0.938 15 C -0.178 4.178 16 C -0.029 4.029 17 N -0.346 5.346 18 C -0.346 4.346 19 H 0.117 0.883 20 C -0.182 4.182 21 N -0.565 5.565 22 Si 0.713 3.287 23 H -0.214 1.214 24 H -0.228 1.228 25 H -0.197 1.197 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.303 -4.874 3.089 24.978 hybrid contribution 0.584 0.289 1.012 1.203 sum -23.718 -4.585 4.101 24.503 Atomic orbital electron populations 1.21780 0.96076 1.01467 1.01656 1.21528 0.95562 0.97040 1.02227 1.21689 0.95335 0.96791 1.01973 1.21410 0.94467 0.94355 1.03575 1.21306 0.92522 0.99023 1.00217 0.89054 1.21968 1.01900 1.00994 0.96028 1.20612 0.89702 0.83407 0.76196 1.90697 1.69465 1.31345 1.49370 1.47878 1.09078 1.06082 1.71492 1.21908 0.96834 0.85966 1.01967 1.21817 0.76906 1.03633 0.98304 1.22375 0.86296 0.94682 0.93904 0.93798 1.23497 0.96950 0.97743 0.99637 1.22567 0.96701 0.93141 0.90518 1.46220 1.00782 1.61649 1.25913 1.18592 0.87423 1.31703 0.96916 0.88317 1.24699 0.95457 1.00535 0.97542 1.69768 1.02107 1.54106 1.30551 0.86813 0.77757 0.77461 0.86669 1.21385 1.22771 1.19716 0.92920 0.92847 0.92856 0.91998 0.91966 0.91755 0.92143 0.91329 0.91126 0.92055 0.91528 0.91493 0.91102 0.91048 0.92519 0.90582 0.89391 0.89310 0.92571 0.93070 0.94327 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.91 4.97 -26.73 -0.13 -1.04 16 4 C -0.10 -1.00 3.98 -26.73 -0.11 -1.10 16 5 C -0.11 -1.09 1.90 -91.77 -0.17 -1.27 16 6 H 0.09 0.77 7.20 -51.93 -0.37 0.39 16 7 C -0.15 -1.26 8.64 37.16 0.32 -0.94 16 8 C 0.51 7.37 7.00 -10.99 -0.08 7.30 16 9 O -0.53 -9.68 15.20 5.55 0.08 -9.60 16 10 N -0.61 -8.66 2.87 -181.57 -0.52 -9.18 16 11 C 0.08 0.78 9.00 59.85 0.54 1.31 16 12 C 0.12 2.10 5.41 -4.05 -0.02 2.08 16 13 C 0.14 2.71 4.31 -72.33 -0.31 2.40 16 14 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.14 -2.74 7.65 -26.16 -0.20 -2.94 16 16 C 0.10 2.17 5.62 -8.50 -0.05 2.12 16 17 N -0.62 -15.38 3.48 -176.78 -0.61 -15.99 16 18 C -0.22 -6.32 10.96 -15.06 -0.17 -6.49 16 19 H 0.10 2.93 8.06 -52.49 -0.42 2.51 16 20 C 0.01 0.44 5.50 -17.43 -0.10 0.35 16 21 N -0.92 -28.96 13.97 55.49 0.78 -28.19 16 22 Si 0.88 23.26 25.15 -169.99 -4.28 18.98 16 23 H -0.29 -7.47 6.83 56.52 0.39 -7.09 16 24 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 25 H -0.27 -6.93 6.03 56.52 0.34 -6.59 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.51 5.23 -51.93 -0.27 0.24 16 37 H 0.07 0.44 6.51 -51.93 -0.34 0.10 16 38 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 39 H 0.07 0.53 5.62 -51.93 -0.29 0.24 16 40 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 41 H 0.08 1.40 7.97 -51.93 -0.41 0.98 16 42 H 0.09 1.78 7.11 -51.93 -0.37 1.41 16 43 H 0.09 1.83 7.94 -51.93 -0.41 1.41 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.05 1.21 6.36 -51.93 -0.33 0.88 16 46 H 0.04 0.86 7.12 -51.93 -0.37 0.49 16 47 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -33.30 360.27 -7.98 -41.27 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.59 Total: -2.82 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.26 Total: 0.10 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.36 Total: -53.36 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.28 Total: 18.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.30 -7.98 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.655 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds