Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47191 * 2 1 4 4 C 1.53002 * 109.47191 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47066 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47053 * 304.99716 * 5 4 3 7 7 C 1.53000 * 109.47145 * 65.00191 * 5 4 3 8 8 C 1.50694 * 109.46621 * 185.00098 * 5 4 3 9 9 O 1.21286 * 120.00371 * 352.32684 * 8 5 4 10 10 N 1.34777 * 119.99954 * 172.33109 * 8 5 4 11 11 C 1.46504 * 119.99936 * 5.46594 * 10 8 5 12 12 C 1.46497 * 120.00482 * 185.46708 * 10 8 5 13 13 C 1.52994 * 109.47355 * 265.75231 * 12 10 8 14 14 H 1.09000 * 112.73959 * 316.55958 * 13 12 10 15 15 C 1.53617 * 113.56231 * 87.30776 * 13 12 10 16 16 C 1.53490 * 83.30776 * 140.82762 * 15 13 12 17 17 N 1.47070 * 88.05098 * 333.97879 * 16 15 13 18 18 C 1.36940 * 136.06228 * 207.12856 * 17 16 15 19 19 H 1.07993 * 119.99819 * 171.42197 * 18 17 16 20 20 C 1.38810 * 119.99515 * 351.41889 * 18 17 16 21 21 N 1.31621 * 119.99591 * 162.90308 * 20 18 17 22 22 Si 1.86798 * 120.00378 * 342.90584 * 20 18 17 23 23 H 1.48505 * 109.46938 * 87.76414 * 22 20 18 24 24 H 1.48500 * 109.46974 * 207.76226 * 22 20 18 25 25 H 1.48500 * 109.47078 * 327.76461 * 22 20 18 26 26 H 1.08994 * 109.47337 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47184 * 300.00151 * 1 2 3 28 28 H 1.09004 * 109.46905 * 59.99808 * 1 2 3 29 29 H 1.09002 * 109.46499 * 240.00148 * 2 1 3 30 30 H 1.08993 * 109.46965 * 120.00698 * 2 1 3 31 31 H 1.09006 * 109.46904 * 60.00296 * 3 2 1 32 32 H 1.09004 * 109.47469 * 300.00696 * 3 2 1 33 33 H 1.09002 * 109.46499 * 60.00148 * 4 3 2 34 34 H 1.09004 * 109.46905 * 300.00192 * 4 3 2 35 35 H 1.09000 * 109.46792 * 61.23737 * 7 5 4 36 36 H 1.08995 * 109.47273 * 181.23663 * 7 5 4 37 37 H 1.08998 * 109.46838 * 301.24168 * 7 5 4 38 38 H 1.09000 * 109.47259 * 212.66035 * 11 10 8 39 39 H 1.08999 * 109.47130 * 332.65989 * 11 10 8 40 40 H 1.08998 * 109.46823 * 92.65881 * 11 10 8 41 41 H 1.09002 * 109.47500 * 145.74632 * 12 10 8 42 42 H 1.09006 * 109.46973 * 25.74954 * 12 10 8 43 43 H 1.09001 * 114.20335 * 27.25478 * 15 13 12 44 44 H 1.09004 * 114.23680 * 254.39968 * 15 13 12 45 45 H 1.08998 * 113.46994 * 219.17545 * 16 15 13 46 46 H 1.08997 * 113.47381 * 88.78594 * 16 15 13 47 47 H 0.96995 * 120.00190 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6759 3.5682 1.3079 8 6 5.5818 2.8868 -0.1245 9 8 6.1965 1.8428 -0.0657 10 7 6.2420 4.0484 -0.3010 11 6 5.5145 5.3191 -0.2522 12 6 7.6871 4.0406 -0.5417 13 6 8.4262 4.2254 0.7850 14 1 7.9796 4.9970 1.4122 15 6 8.6876 2.9082 1.5310 16 6 10.0351 3.5679 1.8552 17 7 9.8819 4.3667 0.6299 18 6 10.7239 4.9740 -0.2631 19 1 10.3300 5.3950 -1.1762 20 6 12.0837 5.0484 0.0056 21 7 12.9326 5.3146 -0.9645 22 14 12.7090 4.7706 1.7438 23 1 12.9505 3.3209 1.9571 24 1 13.9775 5.5177 1.9388 25 1 11.6961 5.2522 2.7171 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 4.1289 3.0417 2.1480 36 1 4.0201 4.6024 1.2991 37 1 2.5907 3.5473 1.4085 38 1 5.9804 6.0309 -0.9338 39 1 4.4785 5.1563 -0.5493 40 1 5.5435 5.7156 0.7627 41 1 7.9471 4.8541 -1.2190 42 1 7.9757 3.0893 -0.9890 43 1 8.7619 2.0348 0.8831 44 1 8.0469 2.7506 2.3987 45 1 10.8767 2.8762 1.8199 46 1 10.0181 4.1646 2.7672 47 1 13.8828 5.3662 -0.7769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234040663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = -13.301679 kcal Electronic energy + Delta-G solvation = -23037.850281 eV Core-core repulsion = 19835.439362 eV Total energy + Delta-G solvation = -3202.410919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33279 -40.00420 -37.26614 -36.50461 -34.49262 -34.18357 -30.70624 -30.21415 -29.03847 -27.63461 -25.95195 -25.18591 -24.54269 -22.72760 -21.60439 -21.09883 -19.78883 -18.89895 -17.95111 -17.42740 -17.17235 -16.65204 -16.36755 -15.76055 -15.53673 -15.12327 -14.91688 -14.67746 -14.33636 -14.13821 -13.98725 -13.81640 -13.68713 -13.48999 -13.37751 -13.19610 -12.79105 -12.71390 -12.60185 -12.45233 -12.11909 -12.05609 -11.94105 -11.86263 -11.82080 -11.76643 -11.46610 -11.28835 -11.12916 -10.99143 -10.54557 -9.62597 -9.17171 -8.14888 -5.41077 1.29646 1.33370 1.41938 1.72454 2.03623 2.41671 2.99009 3.13916 3.56899 3.68382 3.80879 4.00483 4.12147 4.21088 4.25153 4.30290 4.30705 4.34810 4.36691 4.53736 4.58370 4.60784 4.65748 4.74091 4.79355 4.83041 4.87291 4.91236 4.94365 4.96589 4.98446 5.08047 5.09217 5.15076 5.17679 5.27491 5.36016 5.42185 5.45351 5.53280 5.57950 5.62331 6.14129 6.49497 6.52003 7.27585 7.43260 8.28177 9.05408 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036775 B = 0.003295 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.211139 B = 8495.990504 C = 8690.878501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.097 4.097 5 C -0.100 4.100 6 H 0.117 0.883 7 C -0.148 4.148 8 C 0.506 3.494 9 O -0.579 6.579 10 N -0.611 5.611 11 C 0.069 3.931 12 C 0.128 3.872 13 C 0.139 3.861 14 H 0.065 0.935 15 C -0.119 4.119 16 C 0.090 3.910 17 N -0.645 5.645 18 C -0.204 4.204 19 H 0.074 0.926 20 C -0.049 4.049 21 N -0.967 5.967 22 Si 0.942 3.058 23 H -0.285 1.285 24 H -0.304 1.304 25 H -0.255 1.255 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.055 0.945 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.208 -3.843 5.084 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.135 4.135 5 C -0.121 4.121 6 H 0.135 0.865 7 C -0.205 4.205 8 C 0.295 3.705 9 O -0.458 6.458 10 N -0.343 5.343 11 C -0.073 4.073 12 C 0.004 3.996 13 C 0.032 3.968 14 H 0.082 0.918 15 C -0.157 4.157 16 C -0.035 4.035 17 N -0.373 5.373 18 C -0.331 4.331 19 H 0.092 0.908 20 C -0.242 4.242 21 N -0.616 5.616 22 Si 0.771 3.229 23 H -0.212 1.212 24 H -0.232 1.232 25 H -0.179 1.179 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.594 -4.220 4.917 28.344 hybrid contribution 1.476 0.044 0.392 1.528 sum -26.118 -4.176 5.308 26.977 Atomic orbital electron populations 1.21759 0.94957 1.01812 1.02216 1.21546 0.96532 0.97038 1.01573 1.21639 0.93099 0.97014 1.03170 1.21366 0.96328 0.94121 1.01715 1.21349 0.88823 0.99520 1.02380 0.86512 1.21984 1.03466 1.01012 0.94034 1.21510 0.91543 0.82540 0.74859 1.90679 1.70755 1.33017 1.51377 1.47933 1.07383 1.07886 1.71126 1.22218 0.98100 0.83955 1.02989 1.21374 0.79698 1.01626 0.96945 1.22563 0.83892 0.95200 0.95102 0.91751 1.23276 0.95608 0.96685 1.00146 1.22757 0.97744 0.92971 0.90015 1.46344 1.02973 1.61609 1.26405 1.18541 0.87978 1.29733 0.96855 0.90800 1.25375 0.95909 1.01949 1.00995 1.69900 1.02250 1.56973 1.32453 0.85859 0.77226 0.77279 0.82559 1.21161 1.23197 1.17896 0.92789 0.92170 0.92358 0.92847 0.92593 0.90324 0.90983 0.93443 0.92918 0.93486 0.90391 0.88949 0.91077 0.87699 0.91203 0.91409 0.92347 0.90826 0.89535 0.94402 0.92761 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.13 -1.72 5.93 30.59 0.18 -1.54 16 3 C -0.11 -1.38 4.97 30.59 0.15 -1.23 16 4 C -0.10 -1.80 3.98 30.60 0.12 -1.68 16 5 C -0.10 -1.71 1.90 -11.54 -0.02 -1.74 16 6 H 0.12 1.46 7.20 -2.39 -0.02 1.44 16 7 C -0.15 -1.87 8.64 71.98 0.62 -1.25 16 8 C 0.51 13.83 7.00 87.66 0.61 14.44 16 9 O -0.58 -21.15 15.20 -3.05 -0.05 -21.19 16 10 N -0.61 -16.22 2.87 -846.76 -2.43 -18.65 16 11 C 0.07 1.16 9.00 127.77 1.15 2.31 16 12 C 0.13 4.60 5.41 86.38 0.47 5.07 16 13 C 0.14 5.39 4.31 41.83 0.18 5.57 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.12 -4.47 7.65 30.97 0.24 -4.23 16 16 C 0.09 3.91 5.62 83.18 0.47 4.38 16 17 N -0.65 -31.82 3.48 -713.22 -2.48 -34.30 16 18 C -0.20 -11.89 10.96 84.03 0.92 -10.97 16 19 H 0.07 4.56 8.06 -2.91 -0.02 4.54 16 20 C -0.05 -3.00 5.50 84.86 0.47 -2.54 16 21 N -0.97 -62.70 13.97 21.65 0.30 -62.40 16 22 Si 0.94 48.34 25.15 68.60 1.73 50.06 16 23 H -0.28 -14.35 6.83 99.48 0.68 -13.67 16 24 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 25 H -0.25 -12.18 6.03 99.48 0.60 -11.58 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.77 6.54 -2.38 -0.02 0.76 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 1.07 8.07 -2.39 -0.02 1.05 16 34 H 0.05 1.15 8.13 -2.38 -0.02 1.13 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.83 5.23 -2.39 -0.01 0.81 16 37 H 0.09 0.74 6.51 -2.39 -0.02 0.73 16 38 H 0.07 1.23 7.97 -2.39 -0.02 1.21 16 39 H 0.10 1.08 5.62 -2.39 -0.01 1.06 16 40 H 0.07 1.04 7.45 -2.39 -0.02 1.02 16 41 H 0.07 2.52 7.97 -2.39 -0.02 2.50 16 42 H 0.06 2.43 7.11 -2.38 -0.02 2.42 16 43 H 0.07 3.02 7.94 -2.39 -0.02 3.00 16 44 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.04 1.75 6.36 -2.39 -0.02 1.73 16 46 H 0.05 2.23 7.12 -2.39 -0.02 2.22 16 47 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -74.45 360.27 4.12 -70.33 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.78 Total: 10.40 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.27 Total: 5.75 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.61 Total: -115.36 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.73 Total: 50.06 kcal Total: -74.45 4.12 -70.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.032 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds