Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 C 1.52994 * 109.47491 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47142 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46996 * 304.99550 * 5 4 3 7 7 C 1.52999 * 109.47045 * 64.99994 * 5 4 3 8 8 C 1.50705 * 109.47084 * 184.99754 * 5 4 3 9 9 O 1.21279 * 119.99755 * 359.97438 * 8 5 4 10 10 N 1.34775 * 120.00225 * 180.02562 * 8 5 4 11 11 C 1.46497 * 119.99784 * 359.97438 * 10 8 5 12 12 C 1.46494 * 120.00284 * 180.02562 * 10 8 5 13 13 C 1.52993 * 109.47714 * 95.44654 * 12 10 8 14 14 H 1.09005 * 112.96518 * 66.56573 * 13 12 10 15 15 C 1.53945 * 113.76845 * 294.89340 * 13 12 10 16 16 C 1.53949 * 86.29149 * 222.09044 * 15 13 12 17 17 N 1.47577 * 113.77232 * 198.25066 * 13 12 10 18 18 C 1.36945 * 134.49028 * 318.92605 * 17 13 12 19 19 H 1.08000 * 119.99977 * 355.65944 * 18 17 13 20 20 C 1.38814 * 119.99867 * 175.65900 * 18 17 13 21 21 N 1.31623 * 119.99774 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99647 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47332 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47204 * 120.00010 * 22 20 18 25 25 H 1.48503 * 109.46840 * 239.99502 * 22 20 18 26 26 H 1.09010 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47160 * 299.99603 * 1 2 3 28 28 H 1.08995 * 109.47883 * 59.99922 * 1 2 3 29 29 H 1.09003 * 109.47160 * 240.00397 * 2 1 3 30 30 H 1.08995 * 109.47883 * 120.00078 * 2 1 3 31 31 H 1.08998 * 109.47232 * 59.99639 * 3 2 1 32 32 H 1.09009 * 109.46901 * 300.00606 * 3 2 1 33 33 H 1.08995 * 109.47598 * 59.99900 * 4 3 2 34 34 H 1.09006 * 109.46653 * 299.99967 * 4 3 2 35 35 H 1.08998 * 109.47070 * 299.99345 * 7 5 4 36 36 H 1.09006 * 109.47206 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.47586 * 59.99917 * 7 5 4 38 38 H 1.09005 * 109.47218 * 91.85550 * 11 10 8 39 39 H 1.09001 * 109.47495 * 211.85280 * 11 10 8 40 40 H 1.09005 * 109.47360 * 331.85476 * 11 10 8 41 41 H 1.09001 * 109.47028 * 215.44948 * 12 10 8 42 42 H 1.09004 * 109.47083 * 335.44441 * 12 10 8 43 43 H 1.09002 * 113.74050 * 336.43305 * 15 13 12 44 44 H 1.09001 * 113.74762 * 107.63772 * 15 13 12 45 45 H 1.08997 * 113.77267 * 137.90553 * 16 15 13 46 46 H 1.08996 * 113.76643 * 269.19429 * 16 15 13 47 47 H 0.96999 * 119.99313 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 0.0000 6 1 3.6449 3.4246 -0.8414 7 6 3.6756 3.5683 1.3079 8 6 5.5817 2.8870 -0.1244 9 8 6.1848 1.8379 -0.2051 10 7 6.2548 4.0545 -0.1449 11 6 5.5263 5.3217 -0.0469 12 6 7.7147 4.0564 -0.2664 13 6 8.1041 4.2375 -1.7348 14 1 7.8348 5.2176 -2.1286 15 6 7.6770 3.0669 -2.6389 16 6 9.0603 3.2039 -3.3003 17 7 9.4920 3.8363 -2.0360 18 6 10.6947 3.9887 -1.3991 19 1 10.7544 4.5673 -0.4891 20 6 11.8372 3.3995 -1.9231 21 7 11.7643 2.6939 -3.0318 22 14 13.4775 3.6068 -1.0539 23 1 13.2916 4.4382 0.1624 24 1 14.0047 2.2736 -0.6670 25 1 14.4404 4.2739 -1.9666 26 1 -0.3634 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9336 0.9286 0.8892 35 1 2.5893 3.5670 1.3979 36 1 4.0385 4.5962 1.3082 37 1 4.1105 3.0288 2.1493 38 1 5.4587 5.6221 0.9988 39 1 6.0549 6.0895 -0.6119 40 1 4.5231 5.1967 -0.4545 41 1 8.1272 4.8756 0.3225 42 1 8.1110 3.1097 0.1005 43 1 7.5375 2.1275 -2.1039 44 1 6.8458 3.3054 -3.3025 45 1 9.5464 2.2498 -3.5040 46 1 9.0732 3.8790 -4.1560 47 1 12.5625 2.2819 -3.3977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234040664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = 0.885865 kcal Electronic energy + Delta-G solvation = -23099.893584 eV Core-core repulsion = 19898.097883 eV Total energy + Delta-G solvation = -3201.795701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06994 -37.77635 -36.35832 -35.22447 -33.46713 -32.05277 -29.30068 -27.88671 -27.75037 -26.63487 -25.02753 -23.25245 -22.96716 -21.62676 -20.72287 -18.93494 -18.70787 -16.92173 -16.56383 -15.99798 -15.80123 -15.26898 -14.69442 -14.46937 -14.09415 -13.89962 -13.58886 -13.40712 -13.30513 -12.99884 -12.76320 -12.46526 -12.24491 -12.21909 -11.85636 -11.67421 -11.39022 -11.31139 -11.10283 -11.01905 -10.94772 -10.78612 -10.70464 -10.60139 -10.56723 -10.36745 -9.76346 -9.63046 -9.50673 -9.28206 -8.70087 -8.24071 -6.77246 -5.67300 -3.00471 2.93251 3.24549 3.43499 3.48113 3.51011 4.47181 4.54815 4.59033 4.74485 4.94390 4.97478 5.01179 5.08449 5.28366 5.30054 5.33838 5.41456 5.47217 5.52474 5.54866 5.59769 5.66138 5.67493 5.73271 5.78696 5.82771 5.90595 5.96979 6.00187 6.05755 6.07130 6.20757 6.24735 6.33822 6.46387 6.64422 6.81453 6.83676 6.89842 7.36679 7.57560 7.71564 7.71956 8.08626 8.51111 9.12416 9.79657 10.70800 11.49082 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.003428 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.345570 B = 8165.004491 C = 8503.537595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.109 4.109 6 H 0.093 0.907 7 C -0.157 4.157 8 C 0.513 3.487 9 O -0.529 6.529 10 N -0.610 5.610 11 C 0.078 3.922 12 C 0.115 3.885 13 C 0.129 3.871 14 H 0.039 0.961 15 C -0.156 4.156 16 C 0.155 3.845 17 N -0.601 5.601 18 C -0.220 4.220 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.292 1.292 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.021 0.979 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.414 2.106 6.686 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.139 4.139 5 C -0.130 4.130 6 H 0.111 0.889 7 C -0.214 4.214 8 C 0.301 3.699 9 O -0.405 6.405 10 N -0.344 5.344 11 C -0.066 4.066 12 C -0.008 4.008 13 C 0.021 3.979 14 H 0.057 0.943 15 C -0.194 4.194 16 C 0.030 3.970 17 N -0.327 5.327 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.219 1.219 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.039 0.961 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.713 1.502 6.692 22.770 hybrid contribution 1.012 0.468 0.298 1.154 sum -20.700 1.970 6.990 21.937 Atomic orbital electron populations 1.21778 0.96109 1.01442 1.01616 1.21530 0.95517 0.97072 1.02269 1.21682 0.95373 0.96766 1.01904 1.21409 0.94413 0.94371 1.03662 1.21292 0.92599 0.99036 1.00088 0.88894 1.22082 1.01892 1.01292 0.96105 1.20589 0.89596 0.83528 0.76223 1.90714 1.69971 1.30990 1.48855 1.47809 1.07842 1.05788 1.72929 1.21910 0.97117 0.86404 1.01146 1.21802 0.77312 1.03469 0.98206 1.22502 0.86965 0.95628 0.92790 0.94336 1.23788 0.97503 0.99329 0.98822 1.22294 0.88603 0.97784 0.88284 1.45969 1.00720 1.65441 1.20599 1.19019 0.83772 1.26866 1.05130 0.90462 1.24780 0.97783 1.00178 0.97762 1.69846 1.27687 1.37779 1.21297 0.86079 0.84027 0.77303 0.78542 1.20533 1.21719 1.21868 0.92936 0.92909 0.92840 0.91904 0.92020 0.91874 0.92107 0.90978 0.91390 0.91602 0.91177 0.92268 0.92680 0.91152 0.91092 0.91737 0.88911 0.89551 0.94163 0.90586 0.96139 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -1.03 5.93 -26.73 -0.16 -1.19 16 3 C -0.12 -0.99 4.97 -26.73 -0.13 -1.12 16 4 C -0.10 -1.10 4.03 -26.73 -0.11 -1.21 16 5 C -0.11 -1.18 1.92 -91.77 -0.18 -1.35 16 6 H 0.09 0.87 7.41 -51.93 -0.38 0.49 16 7 C -0.16 -1.33 8.57 37.16 0.32 -1.01 16 8 C 0.51 7.94 6.65 -10.98 -0.07 7.87 16 9 O -0.53 -10.57 13.84 5.56 0.08 -10.49 16 10 N -0.61 -9.03 2.79 -181.57 -0.51 -9.54 16 11 C 0.08 0.79 8.82 59.85 0.53 1.31 16 12 C 0.12 2.17 5.41 -4.05 -0.02 2.15 16 13 C 0.13 2.75 4.57 -66.87 -0.31 2.45 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 15 C -0.16 -3.36 7.25 -25.79 -0.19 -3.55 16 16 C 0.16 3.95 7.64 -2.85 -0.02 3.93 16 17 N -0.60 -16.03 3.58 -169.74 -0.61 -16.64 16 18 C -0.22 -6.33 10.51 -15.05 -0.16 -6.49 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -28.29 11.32 55.49 0.63 -27.66 16 22 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.45 6.56 -51.93 -0.34 0.10 16 36 H 0.07 0.53 4.56 -51.93 -0.24 0.30 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.47 7.07 -51.93 -0.37 0.10 16 39 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.07 0.56 5.87 -51.93 -0.30 0.26 16 41 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 42 H 0.09 2.07 7.26 -51.93 -0.38 1.69 16 43 H 0.09 2.01 6.57 -51.93 -0.34 1.67 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 2.14 6.98 -51.93 -0.36 1.78 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -33.57 362.80 -8.70 -42.27 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.51 Total: -1.92 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.22 Total: 0.76 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.49 Total: -53.85 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.57 -8.70 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.157 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds