Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 C 1.52994 * 109.47491 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47142 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46996 * 304.99550 * 5 4 3 7 7 C 1.52999 * 109.47045 * 64.99994 * 5 4 3 8 8 C 1.50705 * 109.47084 * 184.99754 * 5 4 3 9 9 O 1.21279 * 119.99755 * 359.97438 * 8 5 4 10 10 N 1.34775 * 120.00225 * 180.02562 * 8 5 4 11 11 C 1.46497 * 119.99784 * 359.97438 * 10 8 5 12 12 C 1.46494 * 120.00284 * 180.02562 * 10 8 5 13 13 C 1.52993 * 109.47714 * 95.44654 * 12 10 8 14 14 H 1.09005 * 112.96518 * 66.56573 * 13 12 10 15 15 C 1.53945 * 113.76845 * 294.89340 * 13 12 10 16 16 C 1.53949 * 86.29149 * 222.09044 * 15 13 12 17 17 N 1.47577 * 113.77232 * 198.25066 * 13 12 10 18 18 C 1.36945 * 134.49028 * 318.92605 * 17 13 12 19 19 H 1.08000 * 119.99977 * 355.65944 * 18 17 13 20 20 C 1.38814 * 119.99867 * 175.65900 * 18 17 13 21 21 N 1.31623 * 119.99774 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99647 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47332 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47204 * 120.00010 * 22 20 18 25 25 H 1.48503 * 109.46840 * 239.99502 * 22 20 18 26 26 H 1.09010 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47160 * 299.99603 * 1 2 3 28 28 H 1.08995 * 109.47883 * 59.99922 * 1 2 3 29 29 H 1.09003 * 109.47160 * 240.00397 * 2 1 3 30 30 H 1.08995 * 109.47883 * 120.00078 * 2 1 3 31 31 H 1.08998 * 109.47232 * 59.99639 * 3 2 1 32 32 H 1.09009 * 109.46901 * 300.00606 * 3 2 1 33 33 H 1.08995 * 109.47598 * 59.99900 * 4 3 2 34 34 H 1.09006 * 109.46653 * 299.99967 * 4 3 2 35 35 H 1.08998 * 109.47070 * 299.99345 * 7 5 4 36 36 H 1.09006 * 109.47206 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.47586 * 59.99917 * 7 5 4 38 38 H 1.09005 * 109.47218 * 91.85550 * 11 10 8 39 39 H 1.09001 * 109.47495 * 211.85280 * 11 10 8 40 40 H 1.09005 * 109.47360 * 331.85476 * 11 10 8 41 41 H 1.09001 * 109.47028 * 215.44948 * 12 10 8 42 42 H 1.09004 * 109.47083 * 335.44441 * 12 10 8 43 43 H 1.09002 * 113.74050 * 336.43305 * 15 13 12 44 44 H 1.09001 * 113.74762 * 107.63772 * 15 13 12 45 45 H 1.08997 * 113.77267 * 137.90553 * 16 15 13 46 46 H 1.08996 * 113.76643 * 269.19429 * 16 15 13 47 47 H 0.96999 * 119.99313 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 0.0000 6 1 3.6449 3.4246 -0.8414 7 6 3.6756 3.5683 1.3079 8 6 5.5817 2.8870 -0.1244 9 8 6.1848 1.8379 -0.2051 10 7 6.2548 4.0545 -0.1449 11 6 5.5263 5.3217 -0.0469 12 6 7.7147 4.0564 -0.2664 13 6 8.1041 4.2375 -1.7348 14 1 7.8348 5.2176 -2.1286 15 6 7.6770 3.0669 -2.6389 16 6 9.0603 3.2039 -3.3003 17 7 9.4920 3.8363 -2.0360 18 6 10.6947 3.9887 -1.3991 19 1 10.7544 4.5673 -0.4891 20 6 11.8372 3.3995 -1.9231 21 7 11.7643 2.6939 -3.0318 22 14 13.4775 3.6068 -1.0539 23 1 13.2916 4.4382 0.1624 24 1 14.0047 2.2736 -0.6670 25 1 14.4404 4.2739 -1.9666 26 1 -0.3634 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9336 0.9286 0.8892 35 1 2.5893 3.5670 1.3979 36 1 4.0385 4.5962 1.3082 37 1 4.1105 3.0288 2.1493 38 1 5.4587 5.6221 0.9988 39 1 6.0549 6.0895 -0.6119 40 1 4.5231 5.1967 -0.4545 41 1 8.1272 4.8756 0.3225 42 1 8.1110 3.1097 0.1005 43 1 7.5375 2.1275 -2.1039 44 1 6.8458 3.3054 -3.3025 45 1 9.5464 2.2498 -3.5040 46 1 9.0732 3.8790 -4.1560 47 1 12.5625 2.2819 -3.3977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234040664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = -19.255836 kcal Electronic energy + Delta-G solvation = -23100.766993 eV Core-core repulsion = 19898.097883 eV Total energy + Delta-G solvation = -3202.669111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30007 -39.53151 -37.23921 -36.50270 -34.41710 -34.04534 -30.39861 -29.86452 -28.92100 -27.64431 -25.87083 -25.30152 -24.39301 -22.65322 -21.59144 -20.82862 -19.83392 -18.70689 -17.90511 -17.32115 -16.86038 -16.55682 -16.37932 -15.85700 -15.43389 -15.17887 -14.83394 -14.40485 -14.18581 -14.06376 -13.91071 -13.79956 -13.45860 -13.43237 -13.14649 -12.96629 -12.72447 -12.55777 -12.45892 -12.42564 -12.27666 -12.00906 -11.82733 -11.80529 -11.78040 -11.59381 -11.47599 -11.28940 -11.27665 -10.85481 -10.53133 -9.57083 -8.88663 -7.88744 -5.23356 1.42552 1.45200 1.54728 1.75403 2.05372 2.48858 3.30349 3.39671 3.61776 3.80905 3.90806 4.00243 4.17394 4.25370 4.28884 4.33053 4.35124 4.37046 4.46996 4.59189 4.65275 4.69759 4.79365 4.83329 4.84783 4.88751 4.93930 4.98350 5.00516 5.06446 5.09284 5.10663 5.15762 5.24543 5.27363 5.36069 5.42203 5.52200 5.52936 5.56122 5.59390 5.76481 5.95311 6.54847 6.90914 7.32649 7.61613 8.58351 9.28223 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.003428 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.345570 B = 8165.004491 C = 8503.537595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.110 4.110 4 C -0.099 4.099 5 C -0.099 4.099 6 H 0.119 0.881 7 C -0.152 4.152 8 C 0.503 3.497 9 O -0.586 6.586 10 N -0.608 5.608 11 C 0.068 3.932 12 C 0.129 3.871 13 C 0.137 3.863 14 H 0.063 0.937 15 C -0.132 4.132 16 C 0.150 3.850 17 N -0.631 5.631 18 C -0.226 4.226 19 H 0.087 0.913 20 C -0.075 4.075 21 N -0.957 5.957 22 Si 0.979 3.021 23 H -0.261 1.261 24 H -0.296 1.296 25 H -0.291 1.291 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.022 0.978 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 4.611 7.927 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.120 4.120 6 H 0.137 0.863 7 C -0.209 4.209 8 C 0.293 3.707 9 O -0.466 6.466 10 N -0.340 5.340 11 C -0.073 4.073 12 C 0.004 3.996 13 C 0.030 3.970 14 H 0.081 0.919 15 C -0.170 4.170 16 C 0.024 3.976 17 N -0.357 5.357 18 C -0.354 4.354 19 H 0.104 0.896 20 C -0.267 4.267 21 N -0.606 5.606 22 Si 0.807 3.193 23 H -0.185 1.185 24 H -0.223 1.223 25 H -0.218 1.218 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.421 4.064 7.961 26.005 hybrid contribution 1.771 -0.318 -0.094 1.802 sum -22.650 3.746 7.868 24.268 Atomic orbital electron populations 1.21751 0.94760 1.01832 1.02288 1.21554 0.96686 0.97083 1.01468 1.21628 0.92864 0.96998 1.03258 1.21369 0.96512 0.94325 1.01464 1.21335 0.88690 0.99378 1.02564 0.86281 1.22095 1.03552 1.01456 0.93760 1.21563 0.91566 0.82740 0.74809 1.90699 1.71449 1.33132 1.51313 1.47872 1.06156 1.07693 1.72289 1.22285 0.97979 0.83942 1.03089 1.21321 0.80310 1.01601 0.96326 1.22665 0.83777 0.96125 0.94389 0.91923 1.23478 0.96306 0.98688 0.98506 1.22226 0.90733 0.96029 0.88602 1.46326 1.02228 1.66011 1.21173 1.19446 0.84787 1.25907 1.05246 0.89570 1.25693 1.01573 1.00594 0.98836 1.70054 1.28169 1.39323 1.23083 0.84993 0.79326 0.76977 0.77958 1.18524 1.22302 1.21815 0.92801 0.92032 0.92298 0.93036 0.92688 0.90137 0.90887 0.93670 0.93331 0.88923 0.89598 0.93781 0.90438 0.90633 0.88120 0.90319 0.93281 0.91837 0.90861 0.94414 0.95992 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.98 5.93 30.59 0.18 -1.80 16 3 C -0.11 -1.56 4.97 30.59 0.15 -1.41 16 4 C -0.10 -2.09 4.03 30.59 0.12 -1.97 16 5 C -0.10 -1.89 1.92 -11.54 -0.02 -1.91 16 6 H 0.12 1.71 7.41 -2.39 -0.02 1.70 16 7 C -0.15 -2.01 8.57 71.98 0.62 -1.39 16 8 C 0.50 15.16 6.65 87.66 0.58 15.74 16 9 O -0.59 -24.32 13.84 -3.03 -0.04 -24.36 16 10 N -0.61 -16.77 2.79 -846.77 -2.36 -19.14 16 11 C 0.07 1.08 8.82 127.77 1.13 2.21 16 12 C 0.13 4.78 5.41 86.38 0.47 5.25 16 13 C 0.14 5.72 4.57 45.09 0.21 5.92 16 14 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 15 C -0.13 -5.68 7.25 31.25 0.23 -5.45 16 16 C 0.15 7.83 7.64 86.44 0.66 8.49 16 17 N -0.63 -34.15 3.58 -690.95 -2.48 -36.63 16 18 C -0.23 -13.12 10.51 84.03 0.88 -12.24 16 19 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 20 C -0.07 -4.46 5.50 84.86 0.47 -4.00 16 21 N -0.96 -61.12 11.32 21.65 0.25 -60.87 16 22 Si 0.98 47.71 29.55 68.60 2.03 49.73 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.89 6.56 -2.39 -0.02 0.87 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.04 1.18 7.95 -2.39 -0.02 1.17 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.09 0.78 6.56 -2.39 -0.02 0.77 16 36 H 0.09 0.88 4.56 -2.38 -0.01 0.87 16 37 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.94 7.07 -2.38 -0.02 0.92 16 39 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 40 H 0.10 1.04 5.87 -2.38 -0.01 1.02 16 41 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 42 H 0.05 2.26 7.26 -2.38 -0.02 2.24 16 43 H 0.06 3.07 6.57 -2.39 -0.02 3.05 16 44 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.04 2.24 6.98 -2.39 -0.02 2.23 16 46 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -77.54 362.80 4.69 -72.85 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.92 Total: 12.00 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.39 Total: 6.42 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -4.59 Total: -116.64 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.04 Total: -24.36 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -77.54 4.69 -72.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.592 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds