Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47546 * 2 1 4 4 C 1.53003 * 109.47275 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47193 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47029 * 54.99831 * 5 4 3 7 7 C 1.52997 * 109.46908 * 294.99621 * 5 4 3 8 8 C 1.50694 * 109.47050 * 174.99616 * 5 4 3 9 9 O 1.21280 * 120.00391 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99917 * 179.97438 * 8 5 4 11 11 C 1.46496 * 120.00090 * 355.88675 * 10 8 5 12 12 C 1.46505 * 120.00293 * 175.89297 * 10 8 5 13 13 C 1.52995 * 109.47378 * 94.87295 * 12 10 8 14 14 H 1.08998 * 112.78231 * 316.45285 * 13 12 10 15 15 C 1.53503 * 113.46339 * 87.23359 * 13 12 10 16 16 C 1.53494 * 83.34313 * 140.85058 * 15 13 12 17 17 N 1.47066 * 87.98621 * 333.92970 * 16 15 13 18 18 C 1.36938 * 136.06151 * 206.85904 * 17 16 15 19 19 H 1.08001 * 120.00241 * 174.83257 * 18 17 16 20 20 C 1.38817 * 119.99755 * 354.84016 * 18 17 16 21 21 N 1.31617 * 120.00002 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99801 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47452 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47228 * 119.99802 * 22 20 18 25 25 H 1.48503 * 109.47137 * 239.99583 * 22 20 18 26 26 H 1.09005 * 109.47032 * 59.99797 * 1 2 3 27 27 H 1.08998 * 109.47680 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46944 * 300.00085 * 1 2 3 29 29 H 1.09005 * 109.46944 * 239.99914 * 2 1 3 30 30 H 1.09005 * 109.47006 * 120.00759 * 2 1 3 31 31 H 1.09000 * 109.47402 * 60.00314 * 3 2 1 32 32 H 1.09005 * 109.47120 * 300.00149 * 3 2 1 33 33 H 1.08997 * 109.47539 * 60.00091 * 4 3 2 34 34 H 1.09005 * 109.46895 * 299.99953 * 4 3 2 35 35 H 1.08994 * 109.47609 * 300.00096 * 7 5 4 36 36 H 1.09007 * 109.47055 * 60.00268 * 7 5 4 37 37 H 1.09010 * 109.47003 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47415 * 270.00275 * 11 10 8 39 39 H 1.09001 * 109.46975 * 30.00342 * 11 10 8 40 40 H 1.09004 * 109.47054 * 149.99851 * 11 10 8 41 41 H 1.09002 * 109.46871 * 334.87880 * 12 10 8 42 42 H 1.08997 * 109.47052 * 214.88049 * 12 10 8 43 43 H 1.09000 * 114.20630 * 27.25829 * 15 13 12 44 44 H 1.09001 * 114.38446 * 254.44779 * 15 13 12 45 45 H 1.09002 * 113.46455 * 219.15172 * 16 15 13 46 46 H 1.09003 * 113.52806 * 88.72043 * 16 15 13 47 47 H 0.96998 * 119.99882 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 1 3.6459 3.4234 0.8424 7 6 3.6749 3.5696 -1.3068 8 6 5.5820 2.8864 0.1233 9 8 6.1851 1.8373 0.2033 10 7 6.2552 4.0539 0.1447 11 6 5.5370 5.3170 -0.0423 12 6 7.7051 4.0598 0.3548 13 6 8.4165 4.0914 -0.9993 14 1 7.9728 3.4100 -1.7252 15 6 8.6308 5.5103 -1.5443 16 6 9.9845 4.9416 -1.9916 17 7 9.8782 3.9663 -0.8960 18 6 10.7544 3.2515 -0.1237 19 1 10.3862 2.6467 0.6919 20 6 12.1160 3.3043 -0.3889 21 7 12.5647 4.0410 -1.3831 22 14 13.3113 2.3298 0.6650 23 1 12.5598 1.5889 1.7097 24 1 14.0528 1.3671 -0.1886 25 1 14.2719 3.2592 1.3122 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9283 0.8892 35 1 4.1091 3.0311 -2.1491 36 1 2.5885 3.5684 -1.3959 37 1 4.0380 4.5975 -1.3062 38 1 5.5063 5.5639 -1.1036 39 1 4.5201 5.2164 0.3369 40 1 6.0504 6.1107 0.5006 41 1 7.9971 3.1610 0.8977 42 1 7.9848 4.9405 0.9329 43 1 8.7012 6.2788 -0.7745 44 1 7.9671 5.7822 -2.3650 45 1 10.8109 5.6420 -1.8706 46 1 9.9595 4.4865 -2.9818 47 1 13.5160 4.0776 -1.5686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234040665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = 4.419277 kcal Electronic energy + Delta-G solvation = -22948.205772 eV Core-core repulsion = 19746.563291 eV Total energy + Delta-G solvation = -3201.642481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08413 -38.08173 -36.42344 -35.24655 -33.49039 -32.11418 -29.34791 -27.90716 -27.84143 -26.65077 -24.95820 -23.41578 -22.91094 -21.59627 -20.74682 -19.23992 -18.68975 -16.90789 -16.69642 -15.98087 -15.80114 -15.25313 -14.75634 -14.38739 -14.25010 -13.81976 -13.66593 -13.44000 -13.21492 -13.02014 -12.74005 -12.60015 -12.45251 -12.06073 -11.81984 -11.67994 -11.45762 -11.37055 -11.10460 -11.06682 -11.03419 -10.82619 -10.74463 -10.71736 -10.59575 -10.36387 -9.81001 -9.76730 -9.52154 -9.26240 -8.74660 -8.23060 -6.81387 -5.71593 -3.02961 2.88168 3.24379 3.43489 3.49550 3.52168 4.46603 4.53368 4.57235 4.72434 4.93194 4.95339 5.00440 5.08704 5.23626 5.28258 5.34774 5.43878 5.46398 5.51416 5.54448 5.57029 5.58449 5.68690 5.69591 5.77689 5.80985 5.87153 5.90981 6.00697 6.03809 6.04775 6.22672 6.23058 6.30868 6.35094 6.50125 6.61764 6.73385 6.93791 7.28995 7.45999 7.62392 7.66314 8.04223 8.45897 9.10833 9.76737 10.71060 11.46813 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.003473 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.945346 B = 8059.402472 C = 8826.463066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.108 4.108 6 H 0.092 0.908 7 C -0.160 4.160 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.611 5.611 11 C 0.079 3.921 12 C 0.115 3.885 13 C 0.134 3.866 14 H 0.042 0.958 15 C -0.167 4.167 16 C 0.158 3.842 17 N -0.601 5.601 18 C -0.213 4.213 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.024 0.976 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.555 1.962 1.730 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.139 4.139 5 C -0.129 4.129 6 H 0.110 0.890 7 C -0.217 4.217 8 C 0.298 3.702 9 O -0.411 6.411 10 N -0.344 5.344 11 C -0.065 4.065 12 C -0.008 4.008 13 C 0.026 3.974 14 H 0.059 0.941 15 C -0.206 4.206 16 C 0.032 3.968 17 N -0.327 5.327 18 C -0.341 4.341 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.872 1.276 1.899 22.986 hybrid contribution 0.780 -0.535 0.343 1.006 sum -22.091 0.740 2.242 22.217 Atomic orbital electron populations 1.21777 0.96078 1.01452 1.01632 1.21531 0.95545 0.97069 1.02255 1.21680 0.95310 0.96773 1.01940 1.21416 0.94463 0.94407 1.03618 1.21282 0.92403 0.99008 1.00214 0.88951 1.22154 1.01897 1.01577 0.96086 1.20669 0.89713 0.83517 0.76308 1.90725 1.70205 1.31052 1.49099 1.47870 1.08717 1.06059 1.71785 1.21954 0.96836 0.86188 1.01481 1.21870 0.76842 1.03101 0.99013 1.22395 0.87226 0.93906 0.93860 0.94101 1.23737 1.00147 0.96626 1.00078 1.21926 0.93472 0.90735 0.90667 1.45742 0.98900 1.49867 1.38170 1.18996 0.86465 1.21353 1.07245 0.90094 1.24806 0.96750 1.00521 0.98463 1.69855 1.13027 1.43011 1.30956 0.86064 0.81160 0.79343 0.79379 1.20357 1.21758 1.21760 0.92849 0.92929 0.92870 0.91957 0.91998 0.92154 0.91757 0.91276 0.91195 0.92102 0.91593 0.90827 0.92264 0.91222 0.91188 0.89928 0.90685 0.90631 0.92874 0.91648 0.95824 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.13 -1.02 5.93 -26.74 -0.16 -1.18 16 3 C -0.12 -0.98 4.97 -26.73 -0.13 -1.12 16 4 C -0.10 -1.12 4.03 -26.73 -0.11 -1.22 16 5 C -0.11 -1.17 1.93 -91.77 -0.18 -1.35 16 6 H 0.09 0.83 7.55 -51.92 -0.39 0.44 16 7 C -0.16 -1.43 8.52 37.16 0.32 -1.11 16 8 C 0.51 8.06 7.09 -10.99 -0.08 7.98 16 9 O -0.53 -11.04 15.46 5.56 0.09 -10.95 16 10 N -0.61 -9.09 2.87 -181.57 -0.52 -9.61 16 11 C 0.08 0.79 8.82 59.84 0.53 1.32 16 12 C 0.11 2.15 5.42 -4.04 -0.02 2.13 16 13 C 0.13 2.87 4.31 -72.39 -0.31 2.56 16 14 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.17 -3.15 8.02 -26.22 -0.21 -3.36 16 16 C 0.16 3.83 7.27 -8.51 -0.06 3.77 16 17 N -0.60 -15.97 3.65 -176.99 -0.65 -16.62 16 18 C -0.21 -6.20 10.55 -15.06 -0.16 -6.36 16 19 H 0.08 2.32 7.83 -52.49 -0.41 1.91 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -28.20 11.65 55.49 0.65 -27.55 16 22 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.88 7.95 -51.93 -0.41 0.46 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 37 H 0.07 0.59 4.33 -51.92 -0.23 0.36 16 38 H 0.06 0.56 7.15 -51.93 -0.37 0.18 16 39 H 0.07 0.53 5.75 -51.93 -0.30 0.23 16 40 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 41 H 0.08 1.81 7.34 -51.93 -0.38 1.43 16 42 H 0.07 1.32 7.68 -51.93 -0.40 0.92 16 43 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.72 7.38 -51.93 -0.38 1.34 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -34.16 366.62 -8.80 -42.96 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.56 Total: -2.73 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.30 Total: 1.02 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.52 Total: -53.78 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.16 -8.80 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.382 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds