Wall clock time and date at job start Tue Mar 31 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47546 * 2 1 4 4 C 1.53003 * 109.47275 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47193 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47029 * 54.99831 * 5 4 3 7 7 C 1.52997 * 109.46908 * 294.99621 * 5 4 3 8 8 C 1.50694 * 109.47050 * 174.99616 * 5 4 3 9 9 O 1.21280 * 120.00391 * 359.97438 * 8 5 4 10 10 N 1.34778 * 119.99917 * 179.97438 * 8 5 4 11 11 C 1.46496 * 120.00090 * 355.88675 * 10 8 5 12 12 C 1.46505 * 120.00293 * 175.89297 * 10 8 5 13 13 C 1.52995 * 109.47378 * 94.87295 * 12 10 8 14 14 H 1.08998 * 112.78231 * 316.45285 * 13 12 10 15 15 C 1.53503 * 113.46339 * 87.23359 * 13 12 10 16 16 C 1.53494 * 83.34313 * 140.85058 * 15 13 12 17 17 N 1.47066 * 87.98621 * 333.92970 * 16 15 13 18 18 C 1.36938 * 136.06151 * 206.85904 * 17 16 15 19 19 H 1.08001 * 120.00241 * 174.83257 * 18 17 16 20 20 C 1.38817 * 119.99755 * 354.84016 * 18 17 16 21 21 N 1.31617 * 120.00002 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99801 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47452 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47228 * 119.99802 * 22 20 18 25 25 H 1.48503 * 109.47137 * 239.99583 * 22 20 18 26 26 H 1.09005 * 109.47032 * 59.99797 * 1 2 3 27 27 H 1.08998 * 109.47680 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46944 * 300.00085 * 1 2 3 29 29 H 1.09005 * 109.46944 * 239.99914 * 2 1 3 30 30 H 1.09005 * 109.47006 * 120.00759 * 2 1 3 31 31 H 1.09000 * 109.47402 * 60.00314 * 3 2 1 32 32 H 1.09005 * 109.47120 * 300.00149 * 3 2 1 33 33 H 1.08997 * 109.47539 * 60.00091 * 4 3 2 34 34 H 1.09005 * 109.46895 * 299.99953 * 4 3 2 35 35 H 1.08994 * 109.47609 * 300.00096 * 7 5 4 36 36 H 1.09007 * 109.47055 * 60.00268 * 7 5 4 37 37 H 1.09010 * 109.47003 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47415 * 270.00275 * 11 10 8 39 39 H 1.09001 * 109.46975 * 30.00342 * 11 10 8 40 40 H 1.09004 * 109.47054 * 149.99851 * 11 10 8 41 41 H 1.09002 * 109.46871 * 334.87880 * 12 10 8 42 42 H 1.08997 * 109.47052 * 214.88049 * 12 10 8 43 43 H 1.09000 * 114.20630 * 27.25829 * 15 13 12 44 44 H 1.09001 * 114.38446 * 254.44779 * 15 13 12 45 45 H 1.09002 * 113.46455 * 219.15172 * 16 15 13 46 46 H 1.09003 * 113.52806 * 88.72043 * 16 15 13 47 47 H 0.96998 * 119.99882 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 1 3.6459 3.4234 0.8424 7 6 3.6749 3.5696 -1.3068 8 6 5.5820 2.8864 0.1233 9 8 6.1851 1.8373 0.2033 10 7 6.2552 4.0539 0.1447 11 6 5.5370 5.3170 -0.0423 12 6 7.7051 4.0598 0.3548 13 6 8.4165 4.0914 -0.9993 14 1 7.9728 3.4100 -1.7252 15 6 8.6308 5.5103 -1.5443 16 6 9.9845 4.9416 -1.9916 17 7 9.8782 3.9663 -0.8960 18 6 10.7544 3.2515 -0.1237 19 1 10.3862 2.6467 0.6919 20 6 12.1160 3.3043 -0.3889 21 7 12.5647 4.0410 -1.3831 22 14 13.3113 2.3298 0.6650 23 1 12.5598 1.5889 1.7097 24 1 14.0528 1.3671 -0.1886 25 1 14.2719 3.2592 1.3122 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9283 0.8892 35 1 4.1091 3.0311 -2.1491 36 1 2.5885 3.5684 -1.3959 37 1 4.0380 4.5975 -1.3062 38 1 5.5063 5.5639 -1.1036 39 1 4.5201 5.2164 0.3369 40 1 6.0504 6.1107 0.5006 41 1 7.9971 3.1610 0.8977 42 1 7.9848 4.9405 0.9329 43 1 8.7012 6.2788 -0.7745 44 1 7.9671 5.7822 -2.3650 45 1 10.8109 5.6420 -1.8706 46 1 9.9595 4.4865 -2.9818 47 1 13.5160 4.0776 -1.5686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234040665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:00 Heat of formation + Delta-G solvation = -16.703728 kcal Electronic energy + Delta-G solvation = -22949.121734 eV Core-core repulsion = 19746.563291 eV Total energy + Delta-G solvation = -3202.558443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32673 -39.81247 -37.28718 -36.54874 -34.44961 -34.12337 -30.42305 -29.93462 -28.91551 -27.68534 -25.78251 -25.45287 -24.27378 -22.61398 -21.60310 -21.08805 -19.86997 -18.71034 -18.00424 -17.32121 -16.95196 -16.59375 -16.21340 -15.92587 -15.51336 -15.17342 -14.77408 -14.58738 -14.21769 -14.10139 -13.84758 -13.70503 -13.53181 -13.46491 -13.20323 -13.02562 -12.76949 -12.68550 -12.55609 -12.39640 -12.22935 -11.97494 -11.85511 -11.84725 -11.80283 -11.62376 -11.49972 -11.31703 -11.19886 -10.90353 -10.58501 -9.58541 -8.93983 -7.95648 -5.28161 1.40080 1.41996 1.52509 1.67678 2.05506 2.45452 3.25476 3.46190 3.53992 3.77386 3.82759 3.97349 4.15721 4.23198 4.29144 4.31345 4.32980 4.37661 4.50962 4.58413 4.64470 4.69842 4.81423 4.81873 4.86435 4.91904 4.92942 4.97310 4.99667 5.05927 5.07018 5.08086 5.14549 5.21095 5.25118 5.35009 5.40273 5.47447 5.50638 5.53105 5.56065 5.74149 5.91499 6.50231 6.89037 7.25056 7.56272 8.58129 9.22815 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.003473 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.945346 B = 8059.402472 C = 8826.463066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.099 4.099 5 C -0.097 4.097 6 H 0.124 0.876 7 C -0.156 4.156 8 C 0.499 3.501 9 O -0.598 6.598 10 N -0.608 5.608 11 C 0.067 3.933 12 C 0.129 3.871 13 C 0.134 3.866 14 H 0.020 0.980 15 C -0.124 4.124 16 C 0.148 3.852 17 N -0.632 5.632 18 C -0.225 4.225 19 H 0.074 0.926 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.976 3.024 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.284 1.284 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.038 0.962 46 H 0.008 0.992 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.531 3.948 2.256 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.147 4.147 4 C -0.138 4.138 5 C -0.118 4.118 6 H 0.142 0.858 7 C -0.213 4.213 8 C 0.289 3.711 9 O -0.478 6.478 10 N -0.339 5.339 11 C -0.074 4.074 12 C 0.005 3.995 13 C 0.027 3.973 14 H 0.037 0.963 15 C -0.162 4.162 16 C 0.022 3.978 17 N -0.359 5.359 18 C -0.353 4.353 19 H 0.092 0.908 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.210 1.210 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.057 0.943 46 H 0.026 0.974 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -25.910 3.307 2.424 26.232 hybrid contribution 1.669 -1.181 0.147 2.050 sum -24.240 2.126 2.571 24.469 Atomic orbital electron populations 1.21749 0.94664 1.01854 1.02336 1.21557 0.96764 0.97072 1.01432 1.21627 0.92635 0.97041 1.03381 1.21383 0.96700 0.94363 1.01323 1.21332 0.88299 0.99394 1.02735 0.85789 1.22178 1.03664 1.01738 0.93694 1.21714 0.91851 0.82728 0.74799 1.90698 1.71826 1.33418 1.51908 1.47950 1.07076 1.07952 1.70967 1.22370 0.98168 0.83880 1.03007 1.21433 0.79501 1.01682 0.96898 1.22473 0.84685 0.95185 0.94975 0.96280 1.23495 0.96492 0.95060 1.01110 1.21981 0.95907 0.90288 0.89602 1.46157 1.01288 1.50021 1.38402 1.19248 0.87450 1.21124 1.07497 0.90801 1.25631 0.98375 1.01868 1.00052 1.70021 1.13023 1.44469 1.32616 0.85041 0.78778 0.77885 0.77852 1.19482 1.21917 1.21024 0.92093 0.92795 0.92142 0.92888 0.92924 0.90585 0.90179 0.93704 0.93613 0.94147 0.88706 0.89141 0.90742 0.87887 0.89808 0.94203 0.89072 0.88592 0.88760 0.94326 0.97446 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.00 16 2 C -0.13 -1.98 5.93 30.59 0.18 -1.80 16 3 C -0.11 -1.55 4.97 30.59 0.15 -1.40 16 4 C -0.10 -2.15 4.03 30.60 0.12 -2.03 16 5 C -0.10 -1.89 1.93 -11.54 -0.02 -1.91 16 6 H 0.12 1.69 7.55 -2.38 -0.02 1.67 16 7 C -0.16 -2.21 8.52 71.98 0.61 -1.60 16 8 C 0.50 15.60 7.09 87.65 0.62 16.22 16 9 O -0.60 -26.01 15.46 -3.03 -0.05 -26.05 16 10 N -0.61 -17.07 2.87 -846.76 -2.43 -19.51 16 11 C 0.07 1.04 8.82 127.77 1.13 2.17 16 12 C 0.13 4.84 5.42 86.38 0.47 5.31 16 13 C 0.13 5.75 4.31 41.79 0.18 5.93 16 14 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 15 C -0.12 -4.38 8.02 30.93 0.25 -4.13 16 16 C 0.15 7.29 7.27 83.18 0.60 7.90 16 17 N -0.63 -34.49 3.65 -713.89 -2.60 -37.09 16 18 C -0.22 -13.52 10.55 84.03 0.89 -12.63 16 19 H 0.07 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 21 N -0.95 -59.98 11.65 21.65 0.25 -59.72 16 22 Si 0.98 48.42 29.55 68.60 2.03 50.45 16 23 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 25 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.91 6.57 -2.38 -0.02 0.89 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.19 7.95 -2.38 -0.02 1.17 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.85 6.57 -2.38 -0.02 0.83 16 37 H 0.09 0.99 4.33 -2.38 -0.01 0.98 16 38 H 0.07 1.00 7.15 -2.39 -0.02 0.98 16 39 H 0.10 0.97 5.75 -2.39 -0.01 0.95 16 40 H 0.08 1.14 7.94 -2.38 -0.02 1.12 16 41 H 0.04 1.83 7.34 -2.39 -0.02 1.81 16 42 H 0.09 3.08 7.68 -2.39 -0.02 3.06 16 43 H 0.10 3.06 7.93 -2.39 -0.02 3.05 16 44 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.04 2.08 7.38 -2.39 -0.02 2.07 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -80.33 366.62 4.48 -75.86 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.91 Total: 8.58 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 6.37 Total: 7.49 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.78 Total: -116.33 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -80.33 4.48 -75.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.154 kcal (2) G-P(sol) polarization free energy of solvation -80.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds