Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46981 * 2 1 4 4 C 1.53006 * 109.46853 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46853 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47220 * 55.00104 * 5 4 3 7 7 C 1.52996 * 109.47304 * 294.99999 * 5 4 3 8 8 C 1.50702 * 109.47079 * 174.99955 * 5 4 3 9 9 O 1.21277 * 119.99795 * 5.44077 * 8 5 4 10 10 N 1.34774 * 120.00159 * 185.44189 * 8 5 4 11 11 C 1.46506 * 119.99775 * 4.80082 * 10 8 5 12 12 C 1.46496 * 119.99983 * 184.80711 * 10 8 5 13 13 C 1.52998 * 109.46937 * 273.88629 * 12 10 8 14 14 H 1.09000 * 112.96651 * 66.61176 * 13 12 10 15 15 C 1.53952 * 113.77205 * 294.93009 * 13 12 10 16 16 C 1.53941 * 86.29328 * 222.09184 * 15 13 12 17 17 N 1.47582 * 113.77052 * 198.28860 * 13 12 10 18 18 C 1.36935 * 134.49189 * 318.93435 * 17 13 12 19 19 H 1.07998 * 119.99944 * 8.17477 * 18 17 13 20 20 C 1.38816 * 119.99995 * 188.17774 * 18 17 13 21 21 N 1.31615 * 120.00259 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00050 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47406 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47567 * 119.99630 * 22 20 18 25 25 H 1.48501 * 109.47303 * 239.99720 * 22 20 18 26 26 H 1.08994 * 109.47447 * 59.99508 * 1 2 3 27 27 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46636 * 299.99582 * 1 2 3 29 29 H 1.09007 * 109.46636 * 240.00418 * 2 1 3 30 30 H 1.08994 * 109.47447 * 120.00492 * 2 1 3 31 31 H 1.08997 * 109.47106 * 60.00529 * 3 2 1 32 32 H 1.09000 * 109.47160 * 300.00149 * 3 2 1 33 33 H 1.08997 * 109.47137 * 60.00176 * 4 3 2 34 34 H 1.09000 * 109.47056 * 299.99841 * 4 3 2 35 35 H 1.09003 * 109.47083 * 312.01728 * 7 5 4 36 36 H 1.09004 * 109.47479 * 72.01991 * 7 5 4 37 37 H 1.09004 * 109.47310 * 192.01773 * 7 5 4 38 38 H 1.09003 * 109.46760 * 95.43965 * 11 10 8 39 39 H 1.08991 * 109.47120 * 335.43493 * 11 10 8 40 40 H 1.09007 * 109.46789 * 215.43299 * 11 10 8 41 41 H 1.08998 * 109.47276 * 33.88813 * 12 10 8 42 42 H 1.09005 * 109.47395 * 153.89003 * 12 10 8 43 43 H 1.09008 * 113.73561 * 336.44122 * 15 13 12 44 44 H 1.08995 * 113.74174 * 107.63308 * 15 13 12 45 45 H 1.09000 * 113.77246 * 137.90343 * 16 15 13 46 46 H 1.08998 * 113.77041 * 269.19183 * 16 15 13 47 47 H 0.97001 * 120.00681 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 6 3.6747 3.5698 -1.3067 8 6 5.5820 2.8867 0.1232 9 8 6.1932 1.8394 0.1033 10 7 6.2460 4.0521 0.2555 11 6 5.5027 5.3079 0.3853 12 6 7.7108 4.0630 0.2694 13 6 8.2091 3.8143 1.6944 14 1 7.9793 2.8122 2.0565 15 6 7.8383 4.9324 2.6856 16 6 9.2679 4.7813 3.2363 17 7 9.6115 4.2187 1.9132 18 6 10.7653 4.1147 1.1832 19 1 10.7284 3.7668 0.1615 20 6 11.9825 4.4565 1.7565 21 7 12.0276 4.8810 3.0015 22 14 13.5566 4.3140 0.7609 23 1 13.2373 3.8171 -0.6017 24 1 14.2024 5.6477 0.6620 25 1 14.4816 3.3646 1.4304 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9338 0.9285 0.8891 35 1 3.9231 2.9229 -2.1482 36 1 2.6015 3.7605 -1.2994 37 1 4.2108 4.5140 -1.4036 38 1 5.3934 5.5580 1.4406 39 1 4.5168 5.1948 -0.0653 40 1 6.0452 6.1053 -0.1227 41 1 8.0863 3.2795 -0.3888 42 1 8.0703 5.0320 -0.0772 43 1 7.6504 5.8953 2.2105 44 1 7.0607 4.6497 3.3951 45 1 9.7582 5.7306 3.4520 46 1 9.3505 4.0646 4.0533 47 1 12.8781 5.1195 3.4022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234040666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = -0.055408 kcal Electronic energy + Delta-G solvation = -22918.169670 eV Core-core repulsion = 19716.333152 eV Total energy + Delta-G solvation = -3201.836518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08348 -37.88295 -36.41131 -35.17960 -33.52352 -32.08172 -29.32817 -28.05380 -27.77407 -26.53139 -25.04982 -23.33085 -23.00566 -21.65774 -20.76110 -19.15104 -18.62932 -17.00353 -16.37822 -16.06451 -15.85442 -15.31175 -14.83913 -14.51199 -14.09224 -13.91446 -13.68043 -13.36358 -13.30347 -13.00825 -12.75405 -12.52488 -12.30876 -12.21930 -11.90645 -11.74200 -11.42964 -11.29097 -11.12500 -11.07754 -11.01789 -10.81976 -10.75344 -10.69714 -10.62313 -10.38531 -9.84841 -9.69777 -9.50602 -9.31939 -8.74635 -8.26374 -6.79403 -5.72324 -3.03507 2.87020 3.22418 3.42147 3.48200 3.50320 4.44434 4.53498 4.55162 4.71232 4.89726 4.93697 4.98703 5.12125 5.23289 5.27901 5.28677 5.44153 5.46922 5.50522 5.53056 5.57325 5.59752 5.67582 5.71793 5.75325 5.81388 5.86152 5.90824 6.00199 6.02915 6.04688 6.20151 6.23724 6.28486 6.32849 6.48045 6.71267 6.77374 6.91700 7.30705 7.47960 7.63050 7.67861 8.03818 8.44716 9.10605 9.76798 10.68528 11.46026 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.003192 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.553978 B = 8770.351396 C = 8905.432902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.110 4.110 6 H 0.093 0.907 7 C -0.152 4.152 8 C 0.512 3.488 9 O -0.537 6.537 10 N -0.607 5.607 11 C 0.066 3.934 12 C 0.120 3.880 13 C 0.130 3.870 14 H 0.047 0.953 15 C -0.158 4.158 16 C 0.167 3.833 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.163 -0.970 -6.075 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.138 4.138 5 C -0.131 4.131 6 H 0.111 0.889 7 C -0.209 4.209 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.340 5.340 11 C -0.077 4.077 12 C -0.004 4.004 13 C 0.022 3.978 14 H 0.064 0.936 15 C -0.197 4.197 16 C 0.041 3.959 17 N -0.330 5.330 18 C -0.348 4.348 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.046 0.954 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.461 -1.491 -6.147 23.335 hybrid contribution 1.060 -0.088 -0.300 1.105 sum -21.401 -1.579 -6.447 22.407 Atomic orbital electron populations 1.21778 0.96074 1.01452 1.01649 1.21533 0.95557 0.97066 1.02232 1.21668 0.95291 0.96780 1.01962 1.21429 0.94490 0.94326 1.03590 1.21314 0.92522 0.99084 1.00184 0.88889 1.22016 1.01840 1.00939 0.96101 1.20626 0.89745 0.83443 0.76266 1.90705 1.69738 1.31084 1.49831 1.47812 1.07337 1.06621 1.72273 1.22114 0.97206 0.86269 1.02108 1.21747 0.76955 1.02578 0.99074 1.22503 0.86631 0.95951 0.92671 0.93602 1.23762 0.98560 0.98537 0.98826 1.22097 0.88113 0.97527 0.88126 1.46143 1.02488 1.67291 1.17052 1.19066 0.83284 1.38344 0.94061 0.90326 1.24824 0.97314 1.02192 0.96155 1.69842 1.24480 1.50075 1.12421 0.86099 0.83688 0.77256 0.79074 1.20435 1.21796 1.21767 0.92874 0.92934 0.92829 0.92017 0.91953 0.92069 0.91856 0.91266 0.91216 0.92003 0.91520 0.91242 0.92422 0.90181 0.91233 0.90949 0.90113 0.91070 0.93460 0.91895 0.95445 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -0.95 4.98 -26.73 -0.13 -1.08 16 4 C -0.10 -1.07 3.97 -26.73 -0.11 -1.17 16 5 C -0.11 -1.16 1.89 -91.77 -0.17 -1.33 16 6 H 0.09 0.84 7.75 -51.92 -0.40 0.44 16 7 C -0.15 -1.26 8.09 37.16 0.30 -0.96 16 8 C 0.51 7.85 6.95 -10.99 -0.08 7.77 16 9 O -0.54 -10.66 15.68 5.56 0.09 -10.57 16 10 N -0.61 -8.98 2.77 -181.57 -0.50 -9.48 16 11 C 0.07 0.69 9.25 59.85 0.55 1.24 16 12 C 0.12 2.24 5.29 -4.05 -0.02 2.22 16 13 C 0.13 2.83 4.55 -66.86 -0.30 2.53 16 14 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.16 -3.06 7.01 -25.79 -0.18 -3.24 16 16 C 0.17 4.07 7.34 -2.85 -0.02 4.05 16 17 N -0.60 -15.93 3.58 -169.72 -0.61 -16.54 16 18 C -0.22 -6.31 10.51 -15.06 -0.16 -6.47 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.03 11.64 55.49 0.65 -27.39 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 6.85 -51.93 -0.36 0.10 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 36 H 0.07 0.42 7.19 -51.93 -0.37 0.05 16 37 H 0.07 0.55 5.43 -51.93 -0.28 0.27 16 38 H 0.06 0.59 7.80 -51.93 -0.41 0.18 16 39 H 0.08 0.62 4.14 -51.93 -0.22 0.41 16 40 H 0.07 0.68 7.95 -51.92 -0.41 0.27 16 41 H 0.07 1.51 7.62 -51.93 -0.40 1.11 16 42 H 0.08 1.49 7.90 -51.93 -0.41 1.08 16 43 H 0.07 1.27 8.01 -51.92 -0.42 0.86 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.65 7.57 -51.93 -0.39 1.25 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -33.63 367.56 -8.74 -42.36 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.67 Total: -3.02 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.21 Total: 1.42 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.46 Total: -53.41 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.63 -8.74 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.309 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds