Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46981 * 2 1 4 4 C 1.53006 * 109.46853 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46853 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47220 * 55.00104 * 5 4 3 7 7 C 1.52996 * 109.47304 * 294.99999 * 5 4 3 8 8 C 1.50702 * 109.47079 * 174.99955 * 5 4 3 9 9 O 1.21277 * 119.99795 * 5.44077 * 8 5 4 10 10 N 1.34774 * 120.00159 * 185.44189 * 8 5 4 11 11 C 1.46506 * 119.99775 * 4.80082 * 10 8 5 12 12 C 1.46496 * 119.99983 * 184.80711 * 10 8 5 13 13 C 1.52998 * 109.46937 * 273.88629 * 12 10 8 14 14 H 1.09000 * 112.96651 * 66.61176 * 13 12 10 15 15 C 1.53952 * 113.77205 * 294.93009 * 13 12 10 16 16 C 1.53941 * 86.29328 * 222.09184 * 15 13 12 17 17 N 1.47582 * 113.77052 * 198.28860 * 13 12 10 18 18 C 1.36935 * 134.49189 * 318.93435 * 17 13 12 19 19 H 1.07998 * 119.99944 * 8.17477 * 18 17 13 20 20 C 1.38816 * 119.99995 * 188.17774 * 18 17 13 21 21 N 1.31615 * 120.00259 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00050 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47406 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47567 * 119.99630 * 22 20 18 25 25 H 1.48501 * 109.47303 * 239.99720 * 22 20 18 26 26 H 1.08994 * 109.47447 * 59.99508 * 1 2 3 27 27 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46636 * 299.99582 * 1 2 3 29 29 H 1.09007 * 109.46636 * 240.00418 * 2 1 3 30 30 H 1.08994 * 109.47447 * 120.00492 * 2 1 3 31 31 H 1.08997 * 109.47106 * 60.00529 * 3 2 1 32 32 H 1.09000 * 109.47160 * 300.00149 * 3 2 1 33 33 H 1.08997 * 109.47137 * 60.00176 * 4 3 2 34 34 H 1.09000 * 109.47056 * 299.99841 * 4 3 2 35 35 H 1.09003 * 109.47083 * 312.01728 * 7 5 4 36 36 H 1.09004 * 109.47479 * 72.01991 * 7 5 4 37 37 H 1.09004 * 109.47310 * 192.01773 * 7 5 4 38 38 H 1.09003 * 109.46760 * 95.43965 * 11 10 8 39 39 H 1.08991 * 109.47120 * 335.43493 * 11 10 8 40 40 H 1.09007 * 109.46789 * 215.43299 * 11 10 8 41 41 H 1.08998 * 109.47276 * 33.88813 * 12 10 8 42 42 H 1.09005 * 109.47395 * 153.89003 * 12 10 8 43 43 H 1.09008 * 113.73561 * 336.44122 * 15 13 12 44 44 H 1.08995 * 113.74174 * 107.63308 * 15 13 12 45 45 H 1.09000 * 113.77246 * 137.90343 * 16 15 13 46 46 H 1.08998 * 113.77041 * 269.19183 * 16 15 13 47 47 H 0.97001 * 120.00681 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 0.8424 7 6 3.6747 3.5698 -1.3067 8 6 5.5820 2.8867 0.1232 9 8 6.1932 1.8394 0.1033 10 7 6.2460 4.0521 0.2555 11 6 5.5027 5.3079 0.3853 12 6 7.7108 4.0630 0.2694 13 6 8.2091 3.8143 1.6944 14 1 7.9793 2.8122 2.0565 15 6 7.8383 4.9324 2.6856 16 6 9.2679 4.7813 3.2363 17 7 9.6115 4.2187 1.9132 18 6 10.7653 4.1147 1.1832 19 1 10.7284 3.7668 0.1615 20 6 11.9825 4.4565 1.7565 21 7 12.0276 4.8810 3.0015 22 14 13.5566 4.3140 0.7609 23 1 13.2373 3.8171 -0.6017 24 1 14.2024 5.6477 0.6620 25 1 14.4816 3.3646 1.4304 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9338 0.9285 0.8891 35 1 3.9231 2.9229 -2.1482 36 1 2.6015 3.7605 -1.2994 37 1 4.2108 4.5140 -1.4036 38 1 5.3934 5.5580 1.4406 39 1 4.5168 5.1948 -0.0653 40 1 6.0452 6.1053 -0.1227 41 1 8.0863 3.2795 -0.3888 42 1 8.0703 5.0320 -0.0772 43 1 7.6504 5.8953 2.2105 44 1 7.0607 4.6497 3.3951 45 1 9.7582 5.7306 3.4520 46 1 9.3505 4.0646 4.0533 47 1 12.8781 5.1195 3.4022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234040666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -20.159143 kcal Electronic energy + Delta-G solvation = -22919.041433 eV Core-core repulsion = 19716.333152 eV Total energy + Delta-G solvation = -3202.708281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30457 -39.61493 -37.26117 -36.48261 -34.43697 -34.08527 -30.41113 -29.87231 -29.03855 -27.56249 -25.87809 -25.34614 -24.40865 -22.63990 -21.60371 -20.94567 -19.82353 -18.71703 -17.75389 -17.40367 -16.85433 -16.69950 -16.44152 -15.84212 -15.47138 -15.15720 -14.92672 -14.42133 -14.19487 -14.00287 -13.86066 -13.82379 -13.56552 -13.35643 -13.32230 -13.00002 -12.73074 -12.62209 -12.51745 -12.31383 -12.23911 -12.02419 -11.86290 -11.84205 -11.79497 -11.56903 -11.48514 -11.30735 -11.29972 -10.89022 -10.57859 -9.61651 -8.91015 -7.94079 -5.26996 1.41850 1.43836 1.53887 1.69153 2.02878 2.47234 3.26903 3.41096 3.57113 3.78254 3.85945 3.98919 4.15962 4.23297 4.30560 4.31442 4.32993 4.38196 4.49735 4.56409 4.66476 4.67584 4.79443 4.83784 4.87160 4.90752 4.94480 4.96269 4.98545 5.04866 5.07558 5.09548 5.14197 5.19907 5.26312 5.36524 5.40535 5.48998 5.51628 5.54625 5.58063 5.70132 5.91974 6.51592 6.90385 7.25590 7.58308 8.55994 9.24333 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.003192 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.553978 B = 8770.351396 C = 8905.432902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.110 4.110 4 C -0.098 4.098 5 C -0.099 4.099 6 H 0.121 0.879 7 C -0.148 4.148 8 C 0.502 3.498 9 O -0.594 6.594 10 N -0.605 5.605 11 C 0.057 3.943 12 C 0.136 3.864 13 C 0.129 3.871 14 H 0.018 0.982 15 C -0.119 4.119 16 C 0.158 3.842 17 N -0.630 5.630 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.954 5.954 22 Si 0.976 3.024 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.294 1.294 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.008 0.992 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.951 0.657 -7.130 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.120 4.120 6 H 0.139 0.861 7 C -0.205 4.205 8 C 0.292 3.708 9 O -0.475 6.475 10 N -0.336 5.336 11 C -0.084 4.084 12 C 0.011 3.989 13 C 0.022 3.978 14 H 0.036 0.964 15 C -0.157 4.157 16 C 0.033 3.967 17 N -0.357 5.357 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.260 4.260 21 N -0.603 5.603 22 Si 0.805 3.195 23 H -0.192 1.192 24 H -0.213 1.213 25 H -0.221 1.221 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.026 0.974 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -25.309 0.164 -7.217 26.318 hybrid contribution 1.900 -0.656 0.048 2.011 sum -23.409 -0.492 -7.169 24.487 Atomic orbital electron populations 1.21753 0.94781 1.01826 1.02296 1.21556 0.96674 0.97079 1.01476 1.21615 0.92764 0.97025 1.03330 1.21393 0.96601 0.94182 1.01476 1.21371 0.88436 0.99553 1.02679 0.86139 1.22035 1.03926 1.00571 0.93958 1.21640 0.91812 0.82571 0.74757 1.90683 1.71281 1.33227 1.52275 1.47886 1.05639 1.08437 1.71679 1.22470 0.98329 0.84185 1.03414 1.21276 0.79876 1.01580 0.96150 1.22568 0.84444 0.95457 0.95301 0.96397 1.23499 0.95955 0.98566 0.97701 1.22089 0.91560 0.95809 0.87271 1.46566 1.03688 1.67720 1.17720 1.19399 0.84599 1.37472 0.94482 0.90386 1.25667 1.00477 1.02486 0.97366 1.70015 1.24879 1.51366 1.14015 0.85042 0.79376 0.77082 0.78043 1.19153 1.21265 1.22143 0.92053 0.92810 0.92286 0.92684 0.92996 0.90796 0.90156 0.93199 0.93752 0.93167 0.88334 0.90432 0.91320 0.86906 0.90234 0.94029 0.89472 0.88591 0.90369 0.94112 0.97420 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.13 -1.88 5.93 30.60 0.18 -1.70 16 3 C -0.11 -1.47 4.98 30.60 0.15 -1.32 16 4 C -0.10 -2.01 3.97 30.60 0.12 -1.89 16 5 C -0.10 -1.85 1.89 -11.54 -0.02 -1.87 16 6 H 0.12 1.64 7.75 -2.38 -0.02 1.62 16 7 C -0.15 -1.91 8.09 71.98 0.58 -1.32 16 8 C 0.50 15.05 6.95 87.66 0.61 15.66 16 9 O -0.59 -24.51 15.68 -3.02 -0.05 -24.55 16 10 N -0.60 -16.85 2.77 -846.76 -2.35 -19.20 16 11 C 0.06 0.96 9.25 127.77 1.18 2.14 16 12 C 0.14 5.08 5.29 86.38 0.46 5.54 16 13 C 0.13 5.67 4.55 45.09 0.21 5.88 16 14 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 15 C -0.12 -4.41 7.01 31.25 0.22 -4.19 16 16 C 0.16 7.86 7.34 86.43 0.63 8.49 16 17 N -0.63 -34.01 3.58 -690.86 -2.47 -36.49 16 18 C -0.23 -13.56 10.51 84.03 0.88 -12.67 16 19 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.95 -59.55 11.64 21.65 0.25 -59.30 16 22 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.83 6.85 -2.39 -0.02 0.82 16 33 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 34 H 0.04 1.11 8.04 -2.39 -0.02 1.09 16 35 H 0.05 0.79 8.06 -2.39 -0.02 0.77 16 36 H 0.10 0.71 7.19 -2.38 -0.02 0.69 16 37 H 0.08 0.89 5.43 -2.39 -0.01 0.88 16 38 H 0.07 1.06 7.80 -2.39 -0.02 1.04 16 39 H 0.11 1.17 4.14 -2.39 -0.01 1.16 16 40 H 0.08 1.23 7.95 -2.38 -0.02 1.21 16 41 H 0.04 1.79 7.62 -2.39 -0.02 1.77 16 42 H 0.09 3.14 7.90 -2.38 -0.02 3.12 16 43 H 0.10 3.12 8.01 -2.38 -0.02 3.10 16 44 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.04 2.18 7.57 -2.39 -0.02 2.16 16 46 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -77.44 367.56 4.71 -72.73 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.91 Total: 9.02 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 6.39 Total: 8.29 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -4.57 Total: -114.99 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.55 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -77.44 4.71 -72.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.575 kcal (2) G-P(sol) polarization free energy of solvation -77.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds