Wall clock time and date at job start Tue Mar 31 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 C 1.53001 * 109.47115 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46958 * 185.14279 * 4 3 2 6 6 C 1.46898 * 110.99998 * 295.86340 * 5 4 3 7 7 C 1.50696 * 109.47464 * 295.72959 * 6 5 4 8 8 H 1.08001 * 120.00048 * 354.94859 * 7 6 5 9 9 C 1.37876 * 120.00036 * 174.95759 * 7 6 5 10 10 N 1.31510 * 120.00305 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99770 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46915 * 89.99865 * 11 9 7 13 13 H 1.48501 * 109.46902 * 209.99400 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99481 * 11 9 7 15 15 C 1.46900 * 110.99969 * 171.91039 * 5 4 3 16 16 C 1.53344 * 109.42198 * 298.19833 * 15 5 4 17 17 C 1.53188 * 109.15131 * 178.67156 * 16 15 5 18 18 N 1.46921 * 108.89249 * 54.58132 * 17 16 15 19 19 C 1.34779 * 120.63307 * 126.29401 * 18 17 16 20 20 C 1.50697 * 120.00293 * 179.97438 * 19 18 17 21 21 O 1.21281 * 119.99744 * 0.02562 * 19 18 17 22 22 C 1.46923 * 118.74095 * 306.32021 * 18 17 16 23 23 C 1.53044 * 109.46023 * 178.06988 * 15 5 4 24 24 H 1.09004 * 109.46900 * 299.99499 * 1 2 3 25 25 H 1.08990 * 109.47429 * 59.99617 * 1 2 3 26 26 H 1.08995 * 109.46997 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47065 * 239.99972 * 2 1 3 28 28 H 1.09001 * 109.47848 * 120.00294 * 2 1 3 29 29 H 1.08994 * 109.46790 * 60.00460 * 3 2 1 30 30 H 1.09002 * 109.47183 * 300.00123 * 3 2 1 31 31 H 1.08997 * 109.47249 * 65.14490 * 4 3 2 32 32 H 1.09005 * 109.47242 * 305.13995 * 4 3 2 33 33 H 1.09001 * 109.47069 * 55.73006 * 6 5 4 34 34 H 1.09003 * 109.47008 * 175.72456 * 6 5 4 35 35 H 0.96999 * 120.00134 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.45993 * 58.10072 * 15 5 4 37 37 H 1.09006 * 109.68332 * 58.71048 * 16 15 5 38 38 H 1.08997 * 109.47648 * 298.51362 * 16 15 5 39 39 H 1.08995 * 109.59147 * 294.72305 * 17 16 15 40 40 H 1.09009 * 109.58684 * 174.43764 * 17 16 15 41 41 H 1.09009 * 109.47078 * 90.00038 * 20 19 18 42 42 H 1.08996 * 109.47279 * 210.00255 * 20 19 18 43 43 H 1.09001 * 109.47407 * 330.00474 * 20 19 18 44 44 H 1.09002 * 109.59304 * 173.39157 * 22 18 17 45 45 H 1.09002 * 109.58680 * 293.68154 * 22 18 17 46 46 H 1.09001 * 109.49698 * 61.43584 * 23 15 5 47 47 H 1.09000 * 109.52637 * 301.35894 * 23 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8218 0.1235 6 6 3.6707 3.6256 -1.0429 7 6 4.3403 3.0774 -2.2767 8 1 5.0527 2.2702 -2.1910 9 6 4.0436 3.6065 -3.5148 10 7 3.1759 4.5892 -3.6193 11 14 4.8741 2.9274 -5.0441 12 1 4.0586 1.8172 -5.5986 13 1 4.9994 4.0044 -6.0589 14 1 6.2246 2.4211 -4.6904 15 6 5.5154 2.8481 0.3190 16 6 5.8681 2.1208 1.6222 17 6 7.3892 2.1229 1.8031 18 7 7.8748 3.5078 1.7327 19 6 8.6345 4.0202 2.7210 20 6 9.1253 5.4423 2.6340 21 8 8.9239 3.3364 3.6800 22 6 7.5159 4.3237 0.5648 23 6 5.9935 4.2999 0.3956 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 1.0107 -0.9333 32 1 3.9337 0.8508 0.8395 33 1 2.5887 3.5843 -1.1680 34 1 3.9796 4.6598 -0.8909 35 1 2.9669 4.9612 -4.4904 36 1 6.0033 2.3488 -0.5181 37 1 5.5084 1.0927 1.5777 38 1 5.4010 2.6341 2.4626 39 1 7.8521 1.5328 1.0122 40 1 7.6424 1.6958 2.7735 41 1 8.3964 6.1073 3.0974 42 1 10.0792 5.5299 3.1541 43 1 9.2553 5.7185 1.5876 44 1 7.8503 5.3497 0.7190 45 1 7.9911 3.9146 -0.3268 46 1 5.5250 4.7927 1.2476 47 1 5.7211 4.8220 -0.5216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254425523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:25 Heat of formation + Delta-G solvation = -48.453548 kcal Electronic energy + Delta-G solvation = -23627.358147 eV Core-core repulsion = 20423.422929 eV Total energy + Delta-G solvation = -3203.935219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02281 -38.13239 -36.08018 -34.20008 -32.73491 -31.68122 -30.87499 -29.21375 -28.23194 -26.36252 -24.05423 -23.77213 -22.18019 -21.50816 -20.35106 -19.39869 -18.68513 -17.05420 -16.25060 -15.70139 -15.46480 -15.10914 -14.72767 -14.71432 -14.02087 -13.93226 -13.54934 -13.43038 -12.98788 -12.93819 -12.79966 -12.42512 -12.23908 -12.05639 -11.85054 -11.71814 -11.56341 -11.16388 -11.10059 -10.92981 -10.81112 -10.59747 -10.51300 -10.41933 -10.01012 -9.95529 -9.89248 -9.77006 -9.63998 -9.32398 -8.49536 -8.45184 -7.17655 -6.06950 -4.15953 2.71344 3.16000 3.22104 3.30058 3.31746 4.35616 4.65811 4.78851 5.01976 5.13859 5.22854 5.28128 5.34986 5.37452 5.39783 5.43216 5.53859 5.55459 5.61905 5.75068 5.82434 5.89652 5.96928 6.02526 6.13533 6.15182 6.19460 6.22763 6.24176 6.38924 6.42246 6.51602 6.54388 6.61067 6.82186 6.86787 6.96244 6.99368 7.26471 7.51751 7.54839 7.87387 8.06036 8.25849 8.26253 8.30707 8.94925 9.50951 10.97380 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.005656 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.690617 B = 4949.506011 C = 6587.481223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.062 3.938 5 N -0.539 5.539 6 C 0.182 3.818 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.067 3.933 10 N -0.890 5.890 11 Si 0.883 3.117 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.096 3.904 16 C -0.129 4.129 17 C 0.113 3.887 18 N -0.607 5.607 19 C 0.511 3.489 20 C -0.176 4.176 21 O -0.561 6.561 22 C 0.105 3.895 23 C -0.125 4.125 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -1.922 7.842 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.067 4.067 5 N -0.262 5.262 6 C 0.057 3.943 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.136 4.136 10 N -0.528 5.528 11 Si 0.711 3.289 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.013 4.013 16 C -0.167 4.167 17 C -0.010 4.010 18 N -0.340 5.340 19 C 0.300 3.700 20 C -0.235 4.235 21 O -0.440 6.440 22 C -0.018 4.018 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.462 -1.935 8.623 9.900 hybrid contribution 0.686 -0.664 -1.953 2.174 sum 5.149 -2.599 6.670 8.818 Atomic orbital electron populations 1.21748 0.96436 1.00715 1.01774 1.21480 0.95350 0.97892 1.01204 1.21545 0.95654 0.95244 1.02515 1.21928 0.94743 0.90799 0.99190 1.62564 1.09920 1.11000 1.42741 1.19844 0.96935 0.92905 0.84653 1.21698 1.25171 1.18872 0.92622 0.92726 1.24919 0.94965 0.94865 0.98803 1.69931 1.33313 1.25226 1.24364 0.86737 0.79966 0.78776 0.83388 1.20720 1.21187 1.20035 1.21340 0.90248 0.94863 0.94810 1.22115 0.93993 1.01229 0.99386 1.21598 0.94622 0.82128 1.02682 1.48252 1.50749 1.13850 1.21196 1.20764 0.77820 0.89643 0.81753 1.21959 1.03437 0.93738 1.04385 1.90672 1.58572 1.62171 1.32591 1.21947 0.97085 0.95270 0.87485 1.21973 0.92695 0.97934 1.03705 0.93043 0.92702 0.93493 0.92390 0.92819 0.92351 0.91072 0.94325 0.93066 0.94487 0.95154 0.92849 0.93629 0.91038 0.91353 0.91868 0.89459 0.88885 0.89283 0.89806 0.89665 0.91178 0.91756 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.11 -1.94 4.96 -26.73 -0.13 -2.07 16 4 C 0.06 1.13 4.60 -3.82 -0.02 1.12 16 5 N -0.54 -10.63 4.59 -227.84 -1.05 -11.68 16 6 C 0.18 4.30 4.39 -4.98 -0.02 4.27 16 7 C -0.54 -13.83 7.52 -34.44 -0.26 -14.09 16 8 H 0.05 1.40 5.87 -52.49 -0.31 1.09 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 11 Si 0.88 20.53 29.54 -169.99 -5.02 15.51 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.10 1.69 1.48 -67.51 -0.10 1.59 16 16 C -0.13 -1.95 5.25 -26.46 -0.14 -2.09 16 17 C 0.11 1.61 6.42 -3.72 -0.02 1.59 16 18 N -0.61 -8.52 2.97 -172.77 -0.51 -9.03 16 19 C 0.51 7.30 7.81 -10.99 -0.09 7.22 16 20 C -0.18 -1.73 9.46 36.00 0.34 -1.39 16 21 O -0.56 -10.06 16.51 5.56 0.09 -9.97 16 22 C 0.10 1.38 6.22 -3.71 -0.02 1.36 16 23 C -0.12 -2.02 4.98 -26.61 -0.13 -2.16 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.44 6.67 -51.93 -0.35 1.09 16 31 H 0.04 0.79 6.73 -51.93 -0.35 0.44 16 32 H 0.05 0.84 5.94 -51.93 -0.31 0.54 16 33 H 0.04 0.96 6.32 -51.93 -0.33 0.63 16 34 H 0.03 0.76 6.20 -51.93 -0.32 0.44 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.05 0.90 6.57 -51.93 -0.34 0.56 16 37 H 0.07 1.04 6.23 -51.93 -0.32 0.71 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.29 7.00 -51.92 -0.36 0.93 16 41 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.68 6.19 -51.93 -0.32 0.36 16 44 H 0.09 0.90 5.52 -51.93 -0.29 0.61 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.10 1.79 6.20 -51.93 -0.32 1.47 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -29.21 354.08 -9.03 -38.24 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.13 Total: 2.15 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.48 Total: -6.44 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.82 Total: -44.81 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.21 -9.03 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254425523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.210 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds