Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47055 * 2 1 4 4 C 1.52999 * 109.46988 * 120.00058 * 2 1 3 5 5 C 1.53003 * 109.47198 * 175.00146 * 4 2 1 6 6 N 1.46891 * 109.47171 * 181.11093 * 5 4 2 7 7 C 1.46895 * 111.00254 * 287.70701 * 6 5 4 8 8 C 1.50703 * 109.47232 * 300.36484 * 7 6 5 9 9 H 1.07995 * 120.00053 * 4.36206 * 8 7 6 10 10 C 1.37877 * 120.00004 * 184.35412 * 8 7 6 11 11 N 1.31511 * 120.00220 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99987 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47052 * 90.00139 * 12 10 8 14 14 H 1.48502 * 109.47140 * 210.00453 * 12 10 8 15 15 H 1.48502 * 109.46855 * 329.99931 * 12 10 8 16 16 C 1.46908 * 111.00015 * 163.75344 * 6 5 4 17 17 N 1.46500 * 109.47260 * 204.99972 * 16 6 5 18 18 C 1.36119 * 132.49924 * 269.93861 * 17 16 6 19 19 O 1.21281 * 134.16709 * 0.02562 * 18 17 16 20 20 C 1.51513 * 91.65624 * 179.97438 * 18 17 16 21 21 C 1.47385 * 132.37927 * 90.00267 * 17 16 6 22 22 C 1.53001 * 113.70794 * 65.55717 * 21 17 16 23 23 C 1.53004 * 113.70466 * 294.45926 * 21 17 16 24 24 H 1.09007 * 109.46996 * 300.00133 * 1 2 3 25 25 H 1.09001 * 109.47177 * 60.00012 * 1 2 3 26 26 H 1.08993 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46977 * 240.00271 * 2 1 3 28 28 H 1.09004 * 109.46833 * 60.00091 * 3 2 1 29 29 H 1.08994 * 109.47049 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47118 * 300.00024 * 3 2 1 31 31 H 1.08992 * 109.47266 * 54.99653 * 4 2 1 32 32 H 1.09001 * 109.47119 * 294.99580 * 4 2 1 33 33 H 1.09002 * 109.47040 * 61.10579 * 5 4 2 34 34 H 1.09000 * 109.46390 * 301.11276 * 5 4 2 35 35 H 1.08999 * 109.47238 * 60.36264 * 7 6 5 36 36 H 1.09006 * 109.47855 * 180.36538 * 7 6 5 37 37 H 0.97001 * 120.00252 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.46793 * 84.99792 * 16 6 5 39 39 H 1.08997 * 109.46788 * 325.00574 * 16 6 5 40 40 H 1.08999 * 113.69127 * 245.62892 * 20 18 17 41 41 H 1.08996 * 113.68913 * 114.48103 * 20 18 17 42 42 H 1.08999 * 109.47048 * 298.18367 * 22 21 17 43 43 H 1.09005 * 109.46846 * 58.18119 * 22 21 17 44 44 H 1.09002 * 109.46932 * 178.18119 * 22 21 17 45 45 H 1.08997 * 109.46899 * 181.81827 * 23 21 17 46 46 H 1.08991 * 109.47278 * 301.81772 * 23 21 17 47 47 H 1.09009 * 109.46850 * 61.82150 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1880 6 7 4.0523 -1.5470 2.3745 7 6 3.9423 -0.7099 3.5766 8 6 4.7569 0.5444 3.3915 9 1 5.2444 0.7373 2.4474 10 6 4.8797 1.4458 4.4276 11 7 4.2864 1.2108 5.5775 12 14 5.8889 3.0009 4.1980 13 1 5.0150 4.0870 3.6861 14 1 6.4735 3.4085 5.5008 15 1 6.9804 2.7434 3.2246 16 6 5.4329 -2.0099 2.1798 17 7 5.6856 -3.1679 3.0408 18 6 6.1539 -3.2827 4.3137 19 8 6.5149 -2.4883 5.1561 20 6 6.0453 -4.7931 4.2644 21 6 5.5223 -4.6174 2.8295 22 6 6.4535 -5.1920 1.7602 23 6 4.0666 -5.0524 2.6482 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7517 -0.1583 2.1370 33 1 4.0003 0.1679 1.1620 34 1 3.8540 -1.3769 0.2899 35 1 2.8979 -0.4440 3.7399 36 1 4.3159 -1.2617 4.4392 37 1 4.3724 1.8451 6.3063 38 1 6.1246 -1.2078 2.4372 39 1 5.5773 -2.2936 1.1374 40 1 5.3061 -5.2018 4.9532 41 1 7.0069 -5.3033 4.3203 42 1 6.2364 -4.7243 0.7999 43 1 7.4893 -4.9929 2.0354 44 1 6.2983 -6.2682 1.6835 45 1 4.0230 -6.1350 2.5300 46 1 3.4879 -4.7589 3.5239 47 1 3.6520 -4.5730 1.7613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319079644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = -19.981810 kcal Electronic energy + Delta-G solvation = -23921.152837 eV Core-core repulsion = 20718.452246 eV Total energy + Delta-G solvation = -3202.700591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31503 -37.40660 -36.31566 -35.22793 -32.37267 -31.11352 -29.27952 -28.08471 -27.34618 -26.84929 -26.20905 -23.74500 -22.96040 -20.76249 -20.14444 -19.31273 -17.54090 -16.49125 -16.17012 -15.67167 -15.55298 -14.96636 -14.66829 -14.51077 -13.89276 -13.50206 -13.40578 -13.18724 -12.89949 -12.74280 -12.61382 -12.28138 -12.15652 -11.90469 -11.70618 -11.57037 -11.33023 -11.26296 -11.11294 -10.92860 -10.83199 -10.67456 -10.57933 -10.44983 -10.27476 -10.10900 -9.94757 -9.82746 -9.49334 -9.16119 -8.39175 -8.22372 -7.15540 -5.92394 -4.00175 3.12597 3.32546 3.39950 3.41394 3.48249 4.41561 4.48473 4.71164 4.96396 5.01983 5.09643 5.24828 5.32851 5.39427 5.43101 5.57641 5.68044 5.72140 5.76273 5.83996 5.88474 5.89892 5.93522 6.00430 6.03776 6.08636 6.15571 6.18218 6.21631 6.36071 6.41480 6.45854 6.50527 6.57855 6.60200 6.94150 6.95340 7.10872 7.34727 7.46759 7.62862 7.98921 8.09031 8.30621 8.37085 8.93277 9.07346 9.65351 11.13622 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.007508 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.909104 B = 3728.480744 C = 5738.966212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.064 3.936 6 N -0.557 5.557 7 C 0.191 3.809 8 C -0.547 4.547 9 H 0.053 0.947 10 C 0.070 3.930 11 N -0.883 5.883 12 Si 0.885 3.115 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.293 3.707 17 N -0.611 5.611 18 C 0.524 3.476 19 O -0.489 6.489 20 C -0.175 4.175 21 C 0.154 3.846 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.261 0.739 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -11.867 -10.811 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.064 4.064 6 N -0.282 5.282 7 C 0.066 3.934 8 C -0.586 4.586 9 H 0.071 0.929 10 C -0.133 4.133 11 N -0.521 5.521 12 Si 0.713 3.287 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.082 3.918 17 N -0.349 5.349 18 C 0.309 3.691 19 O -0.360 6.360 20 C -0.216 4.216 21 C 0.069 3.931 22 C -0.201 4.201 23 C -0.195 4.195 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.801 -11.580 -10.195 15.533 hybrid contribution 0.940 1.778 -0.190 2.020 sum -0.862 -9.802 -10.385 14.307 Atomic orbital electron populations 1.21818 0.95880 1.01166 1.01264 1.21074 0.95073 0.96521 0.98562 1.21866 1.01626 0.95899 1.01014 1.21526 0.95548 0.99731 0.97264 1.21946 0.95086 0.97927 0.91464 1.62257 1.19802 1.41062 1.05129 1.19732 0.96691 0.90034 0.86957 1.21570 1.32443 1.06151 0.98440 0.92900 1.24890 0.95352 0.97961 0.95081 1.69936 1.43197 1.35992 1.02992 0.86720 0.80569 0.83895 0.77539 1.20767 1.21179 1.20111 1.21676 0.91754 0.86704 0.91639 1.51265 1.63844 1.05021 1.14800 1.22029 0.76067 0.89600 0.81397 1.90808 1.47465 1.55022 1.42695 1.24049 1.03493 0.96971 0.97094 1.21671 0.96005 0.80996 0.94381 1.21874 0.99021 1.00718 0.98533 1.21807 0.94012 1.00145 1.03570 0.92714 0.93396 0.93093 0.92074 0.92453 0.92231 0.93822 0.92543 0.91270 0.92867 0.93733 0.95629 0.94625 0.92964 0.91103 0.91791 0.87488 0.87853 0.91949 0.92110 0.91294 0.92117 0.91736 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.09 -1.31 2.92 -90.61 -0.26 -1.58 16 3 C -0.15 -2.17 8.95 37.16 0.33 -1.84 16 4 C -0.10 -1.74 4.71 -26.73 -0.13 -1.86 16 5 C 0.06 1.18 4.51 -3.83 -0.02 1.16 16 6 N -0.56 -11.56 4.76 -239.98 -1.14 -12.70 16 7 C 0.19 5.00 4.93 -4.98 -0.02 4.98 16 8 C -0.55 -15.27 7.12 -34.44 -0.25 -15.51 16 9 H 0.05 1.44 6.14 -52.49 -0.32 1.12 16 10 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 11 N -0.88 -27.25 13.29 55.43 0.74 -26.51 16 12 Si 0.88 22.38 29.54 -169.99 -5.02 17.36 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 C 0.29 5.69 6.40 -63.31 -0.41 5.28 16 17 N -0.61 -10.88 3.11 -166.49 -0.52 -11.40 16 18 C 0.52 10.43 9.01 -10.14 -0.09 10.34 16 19 O -0.49 -12.48 17.69 5.56 0.10 -12.38 16 20 C -0.18 -2.32 7.48 -27.14 -0.20 -2.53 16 21 C 0.15 1.99 1.72 -131.12 -0.23 1.76 16 22 C -0.14 -1.43 9.41 37.16 0.35 -1.08 16 23 C -0.14 -1.63 9.41 37.16 0.35 -1.28 16 24 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.94 6.59 -51.93 -0.34 0.59 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.37 6.83 -51.93 -0.35 1.02 16 33 H 0.05 1.09 4.53 -51.93 -0.24 0.86 16 34 H 0.04 0.72 7.63 -51.93 -0.40 0.32 16 35 H 0.03 0.72 6.75 -51.93 -0.35 0.37 16 36 H 0.04 1.07 7.07 -51.93 -0.37 0.70 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.07 1.63 6.52 -51.93 -0.34 1.29 16 39 H 0.06 1.05 7.54 -51.93 -0.39 0.66 16 40 H 0.11 1.28 7.98 -51.93 -0.41 0.87 16 41 H 0.10 1.11 7.98 -51.93 -0.41 0.69 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 47 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -33.02 370.50 -9.14 -42.16 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.55 Total: -0.47 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.33 Total: -1.64 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.93 Total: -50.61 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.10 Total: -12.38 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.02 -9.14 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319079644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.183 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds