Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47055 * 2 1 4 4 C 1.52999 * 109.46988 * 120.00058 * 2 1 3 5 5 C 1.53003 * 109.47198 * 175.00146 * 4 2 1 6 6 N 1.46891 * 109.47171 * 181.11093 * 5 4 2 7 7 C 1.46895 * 111.00254 * 287.70701 * 6 5 4 8 8 C 1.50703 * 109.47232 * 300.36484 * 7 6 5 9 9 H 1.07995 * 120.00053 * 4.36206 * 8 7 6 10 10 C 1.37877 * 120.00004 * 184.35412 * 8 7 6 11 11 N 1.31511 * 120.00220 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99987 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47052 * 90.00139 * 12 10 8 14 14 H 1.48502 * 109.47140 * 210.00453 * 12 10 8 15 15 H 1.48502 * 109.46855 * 329.99931 * 12 10 8 16 16 C 1.46908 * 111.00015 * 163.75344 * 6 5 4 17 17 N 1.46500 * 109.47260 * 204.99972 * 16 6 5 18 18 C 1.36119 * 132.49924 * 269.93861 * 17 16 6 19 19 O 1.21281 * 134.16709 * 0.02562 * 18 17 16 20 20 C 1.51513 * 91.65624 * 179.97438 * 18 17 16 21 21 C 1.47385 * 132.37927 * 90.00267 * 17 16 6 22 22 C 1.53001 * 113.70794 * 65.55717 * 21 17 16 23 23 C 1.53004 * 113.70466 * 294.45926 * 21 17 16 24 24 H 1.09007 * 109.46996 * 300.00133 * 1 2 3 25 25 H 1.09001 * 109.47177 * 60.00012 * 1 2 3 26 26 H 1.08993 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46977 * 240.00271 * 2 1 3 28 28 H 1.09004 * 109.46833 * 60.00091 * 3 2 1 29 29 H 1.08994 * 109.47049 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47118 * 300.00024 * 3 2 1 31 31 H 1.08992 * 109.47266 * 54.99653 * 4 2 1 32 32 H 1.09001 * 109.47119 * 294.99580 * 4 2 1 33 33 H 1.09002 * 109.47040 * 61.10579 * 5 4 2 34 34 H 1.09000 * 109.46390 * 301.11276 * 5 4 2 35 35 H 1.08999 * 109.47238 * 60.36264 * 7 6 5 36 36 H 1.09006 * 109.47855 * 180.36538 * 7 6 5 37 37 H 0.97001 * 120.00252 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.46793 * 84.99792 * 16 6 5 39 39 H 1.08997 * 109.46788 * 325.00574 * 16 6 5 40 40 H 1.08999 * 113.69127 * 245.62892 * 20 18 17 41 41 H 1.08996 * 113.68913 * 114.48103 * 20 18 17 42 42 H 1.08999 * 109.47048 * 298.18367 * 22 21 17 43 43 H 1.09005 * 109.46846 * 58.18119 * 22 21 17 44 44 H 1.09002 * 109.46932 * 178.18119 * 22 21 17 45 45 H 1.08997 * 109.46899 * 181.81827 * 23 21 17 46 46 H 1.08991 * 109.47278 * 301.81772 * 23 21 17 47 47 H 1.09009 * 109.46850 * 61.82150 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1880 6 7 4.0523 -1.5470 2.3745 7 6 3.9423 -0.7099 3.5766 8 6 4.7569 0.5444 3.3915 9 1 5.2444 0.7373 2.4474 10 6 4.8797 1.4458 4.4276 11 7 4.2864 1.2108 5.5775 12 14 5.8889 3.0009 4.1980 13 1 5.0150 4.0870 3.6861 14 1 6.4735 3.4085 5.5008 15 1 6.9804 2.7434 3.2246 16 6 5.4329 -2.0099 2.1798 17 7 5.6856 -3.1679 3.0408 18 6 6.1539 -3.2827 4.3137 19 8 6.5149 -2.4883 5.1561 20 6 6.0453 -4.7931 4.2644 21 6 5.5223 -4.6174 2.8295 22 6 6.4535 -5.1920 1.7602 23 6 4.0666 -5.0524 2.6482 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7517 -0.1583 2.1370 33 1 4.0003 0.1679 1.1620 34 1 3.8540 -1.3769 0.2899 35 1 2.8979 -0.4440 3.7399 36 1 4.3159 -1.2617 4.4392 37 1 4.3724 1.8451 6.3063 38 1 6.1246 -1.2078 2.4372 39 1 5.5773 -2.2936 1.1374 40 1 5.3061 -5.2018 4.9532 41 1 7.0069 -5.3033 4.3203 42 1 6.2364 -4.7243 0.7999 43 1 7.4893 -4.9929 2.0354 44 1 6.2983 -6.2682 1.6835 45 1 4.0230 -6.1350 2.5300 46 1 3.4879 -4.7589 3.5239 47 1 3.6520 -4.5730 1.7613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319079644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = -42.058624 kcal Electronic energy + Delta-G solvation = -23922.110160 eV Core-core repulsion = 20718.452246 eV Total energy + Delta-G solvation = -3203.657914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66304 -38.99553 -37.89906 -36.65668 -34.55361 -32.36996 -30.55506 -29.86661 -28.21681 -28.02061 -27.88276 -25.62112 -24.48012 -22.04894 -21.76503 -20.70983 -19.04694 -18.37125 -17.69046 -17.14910 -17.07955 -16.72336 -16.18030 -16.01911 -15.55256 -14.73540 -14.62373 -14.45211 -14.35650 -14.26850 -14.08563 -13.79178 -13.17029 -13.13872 -13.06549 -13.00705 -12.82555 -12.58953 -12.56899 -12.51444 -12.28985 -12.16872 -12.08900 -11.96149 -11.73934 -11.67984 -11.44746 -11.40936 -11.27547 -10.71936 -10.61639 -9.79176 -9.00428 -8.16425 -6.34101 1.27137 1.30211 1.38772 1.59497 2.16163 2.32677 3.09700 3.15701 3.36607 3.66211 3.98998 4.04903 4.10642 4.13493 4.14926 4.30072 4.44084 4.59993 4.71203 4.76697 4.81206 4.84538 4.86243 4.88075 4.89536 4.91504 5.04849 5.07124 5.08962 5.11714 5.17763 5.23347 5.31803 5.32341 5.36127 5.40703 5.55256 5.56295 5.61616 5.74255 5.85452 5.88937 6.06153 6.23111 6.55714 6.86136 7.35863 7.41827 8.86827 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.007508 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.909104 B = 3728.480744 C = 5738.966212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.095 4.095 5 C 0.065 3.935 6 N -0.548 5.548 7 C 0.217 3.783 8 C -0.546 4.546 9 H 0.057 0.943 10 C 0.009 3.991 11 N -0.925 5.925 12 Si 0.951 3.049 13 H -0.266 1.266 14 H -0.287 1.287 15 H -0.268 1.268 16 C 0.293 3.707 17 N -0.617 5.617 18 C 0.492 3.508 19 O -0.566 6.566 20 C -0.150 4.150 21 C 0.158 3.842 22 C -0.137 4.137 23 C -0.133 4.133 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.029 0.971 34 H 0.082 0.918 35 H -0.003 1.003 36 H -0.010 1.010 37 H 0.260 0.740 38 H 0.026 0.974 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.039 0.961 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -14.042 -14.159 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.133 4.133 5 C -0.063 4.063 6 N -0.273 5.273 7 C 0.090 3.910 8 C -0.585 4.585 9 H 0.075 0.925 10 C -0.191 4.191 11 N -0.565 5.565 12 Si 0.776 3.224 13 H -0.191 1.191 14 H -0.213 1.213 15 H -0.193 1.193 16 C 0.081 3.919 17 N -0.355 5.355 18 C 0.280 3.720 19 O -0.443 6.443 20 C -0.190 4.190 21 C 0.076 3.924 22 C -0.195 4.195 23 C -0.191 4.191 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.058 0.942 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.740 -13.806 -13.613 19.466 hybrid contribution 0.895 2.373 0.798 2.659 sum -0.844 -11.433 -12.815 17.195 Atomic orbital electron populations 1.21790 0.94410 1.02056 1.01571 1.21054 0.96279 0.95632 0.97614 1.21858 1.00728 0.96673 1.01080 1.21453 0.94611 0.99950 0.97276 1.22054 0.95864 0.96899 0.91512 1.62248 1.20905 1.39843 1.04293 1.19160 0.94171 0.89648 0.87973 1.21867 1.31751 1.06479 0.98370 0.92487 1.25817 0.96733 1.01642 0.94863 1.70089 1.45102 1.37361 1.03950 0.85659 0.79201 0.80032 0.77461 1.19123 1.21276 1.19257 1.21622 0.89598 0.86702 0.93936 1.51620 1.62680 1.06975 1.14183 1.23394 0.74958 0.92446 0.81165 1.90739 1.50629 1.57907 1.45062 1.24072 1.05745 0.91464 0.97696 1.22105 0.97699 0.77360 0.95234 1.21882 0.97871 1.02689 0.97026 1.21802 0.92502 1.02682 1.02083 0.94223 0.91300 0.91946 0.89613 0.94896 0.93587 0.91204 0.91660 0.95437 0.95242 0.89991 0.98478 0.99229 0.93076 0.95583 0.87761 0.85915 0.84418 0.91649 0.92214 0.87712 0.88010 0.94206 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 2 C -0.09 -2.29 2.92 -10.79 -0.03 -2.32 16 3 C -0.15 -4.20 8.95 71.98 0.64 -3.55 16 4 C -0.09 -3.20 4.71 30.60 0.14 -3.06 16 5 C 0.06 2.35 4.51 86.31 0.39 2.74 16 6 N -0.55 -23.33 4.76 -913.16 -4.35 -27.67 16 7 C 0.22 12.15 4.93 85.56 0.42 12.57 16 8 C -0.55 -32.08 7.12 25.60 0.18 -31.89 16 9 H 0.06 3.24 6.14 -2.91 -0.02 3.22 16 10 C 0.01 0.52 5.46 84.65 0.46 0.99 16 11 N -0.93 -60.40 13.29 21.45 0.28 -60.11 16 12 Si 0.95 47.62 29.54 68.60 2.03 49.65 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 15 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 16 C 0.29 11.47 6.40 170.80 1.09 12.56 16 17 N -0.62 -22.03 3.11 -798.26 -2.49 -24.51 16 18 C 0.49 20.33 9.01 87.60 0.79 21.12 16 19 O -0.57 -31.16 17.69 -3.03 -0.05 -31.21 16 20 C -0.15 -3.69 7.48 30.36 0.23 -3.46 16 21 C 0.16 3.65 1.72 3.58 0.01 3.65 16 22 C -0.14 -2.10 9.41 71.98 0.68 -1.42 16 23 C -0.13 -2.75 9.41 71.98 0.68 -2.07 16 24 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.03 1.07 8.14 -2.38 -0.02 1.06 16 29 H 0.05 1.43 6.59 -2.39 -0.02 1.41 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 1.14 6.83 -2.39 -0.02 1.12 16 33 H 0.03 1.23 4.53 -2.39 -0.01 1.22 16 34 H 0.08 2.40 7.63 -2.39 -0.02 2.38 16 35 H 0.00 -0.17 6.75 -2.39 -0.02 -0.19 16 36 H -0.01 -0.68 7.07 -2.38 -0.02 -0.70 16 37 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 38 H 0.03 1.26 6.52 -2.39 -0.02 1.25 16 39 H 0.10 3.21 7.54 -2.39 -0.02 3.20 16 40 H 0.12 2.69 7.98 -2.39 -0.02 2.67 16 41 H 0.14 2.48 7.98 -2.39 -0.02 2.46 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 0.96 8.06 -2.38 -0.02 0.94 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.04 1.02 8.05 -2.39 -0.02 1.00 16 47 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -80.95 370.50 2.68 -78.27 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.91 Total: 12.29 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 6.35 Total: 3.31 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.55 Total: -112.30 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -80.95 2.68 -78.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319079644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.214 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds