Wall clock time and date at job start Tue Mar 31 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47021 * 119.99573 * 2 1 3 5 5 N 1.46902 * 109.46626 * 65.00073 * 4 2 1 6 6 C 1.47446 * 111.00042 * 69.87703 * 5 4 2 7 7 C 1.54319 * 107.23396 * 123.25304 * 6 5 4 8 8 C 1.55146 * 103.01862 * 22.28548 * 7 6 5 9 9 C 1.47851 * 110.99804 * 190.71667 * 5 4 2 10 10 H 1.09000 * 110.37385 * 332.46810 * 9 5 4 11 11 C 1.50701 * 110.37089 * 94.80648 * 9 5 4 12 12 O 1.21278 * 120.00263 * 0.02562 * 11 9 5 13 13 N 1.34783 * 119.99550 * 180.02562 * 11 9 5 14 14 C 1.46497 * 119.99602 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46980 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47328 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47558 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99709 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00293 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99748 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99765 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47276 * 90.00659 * 21 19 17 23 23 H 1.48503 * 109.47130 * 209.99989 * 21 19 17 24 24 H 1.48497 * 109.47431 * 330.00452 * 21 19 17 25 25 H 1.09004 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47518 * 300.00339 * 1 2 3 27 27 H 1.09002 * 109.46905 * 60.00375 * 1 2 3 28 28 H 1.08992 * 109.47518 * 239.99660 * 2 1 3 29 29 H 1.09001 * 109.47273 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46911 * 299.99622 * 3 2 1 31 31 H 1.09009 * 109.47170 * 59.99770 * 3 2 1 32 32 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 33 33 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 34 34 H 1.08996 * 109.88401 * 242.65772 * 6 5 4 35 35 H 1.08995 * 109.88370 * 3.84989 * 6 5 4 36 36 H 1.08999 * 110.70668 * 140.66214 * 7 6 5 37 37 H 1.09000 * 110.70543 * 263.72631 * 7 6 5 38 38 H 1.08996 * 110.99073 * 82.43430 * 8 7 6 39 39 H 1.09004 * 110.98718 * 206.22122 * 8 7 6 40 40 H 0.96994 * 119.99750 * 0.02562 * 13 11 9 41 41 H 1.09002 * 109.47351 * 300.00011 * 14 13 11 42 42 H 1.09002 * 109.47480 * 59.99974 * 14 13 11 43 43 H 1.09004 * 109.47068 * 299.99344 * 15 14 13 44 44 H 1.09002 * 109.47119 * 59.99651 * 15 14 13 45 45 H 1.09002 * 109.47268 * 300.00072 * 16 15 14 46 46 H 1.09006 * 109.47043 * 59.99343 * 16 15 14 47 47 H 0.97001 * 119.99708 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6513 -2.1366 1.1905 6 6 2.4042 -2.8482 0.1413 7 6 3.1299 -4.0288 0.8201 8 6 2.2963 -4.2571 2.1086 9 6 1.8981 -2.8081 2.4844 10 1 2.7121 -2.3169 3.0176 11 6 0.6455 -2.8087 3.3224 12 8 -0.3698 -2.3008 2.8958 13 7 0.6537 -3.3739 4.5460 14 6 -0.5640 -3.3750 5.3604 15 6 -0.2854 -4.0726 6.6933 16 6 -1.5570 -4.0733 7.5442 17 6 -1.2828 -4.7609 8.8568 18 1 -0.3000 -5.1581 9.0634 19 6 -2.2870 -4.8838 9.7937 20 7 -2.0477 -5.4843 10.9389 21 14 -3.9870 -4.1975 9.4361 22 1 -4.8137 -5.2407 8.7776 23 1 -4.6321 -3.7851 10.7085 24 1 -3.8671 -3.0210 8.5379 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1262 -0.6442 1.2953 33 1 1.6053 -0.2616 2.1370 34 1 1.7180 -3.2222 -0.6185 35 1 3.1329 -2.1764 -0.3123 36 1 3.1056 -4.9134 0.1838 37 1 4.1574 -3.7600 1.0652 38 1 1.4144 -4.8630 1.9008 39 1 2.9041 -4.7111 2.8914 40 1 1.4659 -3.7797 4.8873 41 1 -0.8775 -2.3478 5.5468 42 1 -1.3551 -3.9058 4.8305 43 1 0.0281 -5.0998 6.5073 44 1 0.5055 -3.5415 7.2230 45 1 -1.8703 -3.0460 7.7302 46 1 -2.3482 -4.6041 7.0146 47 1 -2.7541 -5.5705 11.5982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336330523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:48 Heat of formation + Delta-G solvation = -58.619652 kcal Electronic energy + Delta-G solvation = -22503.943505 eV Core-core repulsion = 19299.567451 eV Total energy + Delta-G solvation = -3204.376054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28832 -38.35121 -35.82339 -35.38952 -33.27615 -31.59544 -31.25723 -29.73975 -27.18618 -27.01094 -25.63668 -23.39886 -21.96228 -21.71590 -20.60340 -19.69421 -19.52223 -17.34599 -16.88931 -16.52575 -15.56261 -15.38116 -15.01251 -14.94052 -14.37646 -14.13635 -14.01227 -13.47941 -13.39000 -13.20622 -13.03595 -12.69195 -12.40235 -12.14853 -12.03602 -11.94182 -11.80466 -11.69852 -11.47975 -11.09002 -11.05855 -11.00236 -10.89975 -10.85362 -10.70171 -10.13933 -9.92786 -9.75161 -9.44867 -9.22160 -8.76854 -8.55255 -8.46205 -6.06195 -4.04783 2.83517 3.13978 3.31855 3.39381 3.44027 3.87716 4.27530 4.35367 4.44896 4.60012 4.67866 4.78740 4.90500 4.94873 5.02936 5.16032 5.23666 5.28114 5.39345 5.44586 5.45961 5.52268 5.53718 5.60958 5.63322 5.68656 5.70156 5.80342 5.84121 5.90732 5.98683 6.04584 6.19617 6.40400 6.44845 6.46946 6.65253 6.76163 6.83269 6.85542 7.23934 7.37352 7.72437 7.79258 8.47445 8.51367 8.97677 9.56281 11.07087 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.002969 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.936717 B = 9427.725843 C =10148.189444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.059 3.941 5 N -0.503 5.503 6 C 0.043 3.957 7 C -0.141 4.141 8 C -0.118 4.118 9 C 0.053 3.947 10 H 0.077 0.923 11 C 0.515 3.485 12 O -0.520 6.520 13 N -0.730 5.730 14 C 0.117 3.883 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.397 0.603 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 7.763 -23.553 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.069 4.069 5 N -0.227 5.227 6 C -0.084 4.084 7 C -0.179 4.179 8 C -0.157 4.157 9 C -0.059 4.059 10 H 0.095 0.905 11 C 0.299 3.701 12 O -0.394 6.394 13 N -0.382 5.382 14 C -0.006 4.006 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.481 8.096 -23.814 27.649 hybrid contribution 0.361 0.142 0.433 0.581 sum 11.842 8.237 -23.381 27.473 Atomic orbital electron populations 1.21683 0.94012 1.03074 1.00521 1.21080 0.97300 0.95123 0.97257 1.21837 1.00485 0.96213 1.02010 1.22364 0.97066 0.88118 0.99380 1.63059 1.55413 1.01766 1.02457 1.22878 0.95801 0.94860 0.94893 1.22793 0.98954 0.99202 0.97000 1.22677 1.00648 0.94465 0.97881 1.22496 0.95207 0.96291 0.91866 0.90499 1.20295 0.89906 0.78506 0.81367 1.90686 1.33589 1.44050 1.71066 1.46155 1.15061 1.59921 1.17084 1.21599 0.86047 1.01203 0.91753 1.21696 1.01016 0.99516 0.92828 1.19504 0.92874 0.97132 0.95409 1.21101 0.99133 1.36993 0.98743 0.91030 1.25027 0.98902 0.94685 0.94873 1.69910 1.33588 1.43456 1.07292 0.86775 0.84564 0.80186 0.77782 1.20231 1.21380 1.18882 0.91069 0.93010 0.93922 0.91511 0.93076 0.92512 0.92572 0.94964 0.90737 0.90299 0.92450 0.90329 0.91257 0.89908 0.89892 0.76985 0.91996 0.91919 0.92168 0.92192 0.96342 0.96760 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.08 37.16 0.34 -1.13 16 2 C -0.09 -0.81 2.89 -90.62 -0.26 -1.07 16 3 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 4 C 0.06 0.58 3.93 -3.82 -0.01 0.57 16 5 N -0.50 -5.42 3.79 -224.75 -0.85 -6.27 16 6 C 0.04 0.36 6.13 -2.83 -0.02 0.34 16 7 C -0.14 -0.98 6.94 -24.90 -0.17 -1.15 16 8 C -0.12 -1.00 6.47 -24.59 -0.16 -1.16 16 9 C 0.05 0.56 2.80 -67.34 -0.19 0.38 16 10 H 0.08 0.71 7.81 -51.93 -0.41 0.30 16 11 C 0.52 7.40 7.19 -10.98 -0.08 7.32 16 12 O -0.52 -9.60 16.49 5.56 0.09 -9.51 16 13 N -0.73 -9.95 5.54 -60.29 -0.33 -10.28 16 14 C 0.12 1.95 5.67 -4.04 -0.02 1.93 16 15 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 17 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 21 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 25 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.57 7.05 -51.93 -0.37 0.21 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.03 0.28 7.96 -51.93 -0.41 -0.13 16 33 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.42 6.94 -51.93 -0.36 0.05 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 4.32 8.47 -40.82 -0.35 3.98 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -32.67 371.75 -9.29 -41.96 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.98 Total: -1.03 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.92 Total: -10.60 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.41 Total: -43.59 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.67 -9.29 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336330523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.665 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds