Wall clock time and date at job start Tue Mar 31 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47504 * 2 1 4 4 C 1.53004 * 109.47133 * 120.00006 * 2 1 3 5 5 N 1.46900 * 109.47096 * 175.61158 * 4 2 1 6 6 C 1.47898 * 111.00059 * 294.34231 * 5 4 2 7 7 C 1.53992 * 107.05814 * 214.15510 * 6 5 4 8 8 C 1.54594 * 105.13867 * 1.22991 * 7 6 5 9 9 C 1.48541 * 110.99676 * 176.94851 * 5 4 2 10 10 H 1.09000 * 110.66421 * 41.28825 * 9 5 4 11 11 C 1.50701 * 110.66656 * 278.15662 * 9 5 4 12 12 O 1.21282 * 119.99781 * 0.02562 * 11 9 5 13 13 N 1.34772 * 119.99911 * 179.97438 * 11 9 5 14 14 C 1.46499 * 119.99999 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.46843 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.46883 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47254 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99767 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00451 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99648 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00464 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47054 * 89.99512 * 21 19 17 23 23 H 1.48499 * 109.47318 * 210.00016 * 21 19 17 24 24 H 1.48507 * 109.46763 * 330.00106 * 21 19 17 25 25 H 1.08996 * 109.46832 * 300.00335 * 1 2 3 26 26 H 1.09003 * 109.46431 * 59.99929 * 1 2 3 27 27 H 1.08995 * 109.46977 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47321 * 239.99709 * 2 1 3 29 29 H 1.09009 * 109.47132 * 65.00893 * 3 2 1 30 30 H 1.08998 * 109.47429 * 185.00911 * 3 2 1 31 31 H 1.09007 * 109.47276 * 305.01409 * 3 2 1 32 32 H 1.09001 * 109.46950 * 55.61241 * 4 2 1 33 33 H 1.09000 * 109.46975 * 295.61593 * 4 2 1 34 34 H 1.08996 * 109.91898 * 333.51431 * 6 5 4 35 35 H 1.09005 * 109.91435 * 94.80688 * 6 5 4 36 36 H 1.09004 * 110.30599 * 120.14542 * 7 6 5 37 37 H 1.08999 * 110.31261 * 242.21520 * 7 6 5 38 38 H 1.09008 * 110.72208 * 140.31151 * 8 7 6 39 39 H 1.08993 * 110.72546 * 263.41580 * 8 7 6 40 40 H 0.97000 * 119.99696 * 0.02562 * 13 11 9 41 41 H 1.08994 * 109.47023 * 300.00167 * 14 13 11 42 42 H 1.08991 * 109.47017 * 60.00775 * 14 13 11 43 43 H 1.08994 * 109.47291 * 299.99811 * 15 14 13 44 44 H 1.09000 * 109.46831 * 60.00723 * 15 14 13 45 45 H 1.09001 * 109.47222 * 300.00360 * 16 15 14 46 46 H 1.09004 * 109.46965 * 60.00283 * 16 15 14 47 47 H 0.96999 * 119.99877 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5052 -0.8137 1.1974 6 6 3.9426 -1.6775 0.0794 7 6 5.2155 -2.4086 0.5447 8 6 5.4482 -1.9301 1.9961 9 6 4.0427 -1.4441 2.4304 10 1 3.4211 -2.2865 2.7341 11 6 4.1497 -0.4322 3.5420 12 8 3.8142 0.7174 3.3498 13 7 4.6171 -0.8048 4.7498 14 6 4.7217 0.1790 5.8302 15 6 5.2770 -0.4983 7.0848 16 6 5.3868 0.5294 8.2130 17 6 5.9343 -0.1375 9.4485 18 1 6.1798 -1.1891 9.4306 19 6 6.1218 0.5947 10.6016 20 7 5.8232 1.8754 10.6231 21 14 6.8012 -0.2318 12.1328 22 1 8.2833 -0.1393 12.1290 23 1 6.2659 0.4467 13.3404 24 1 6.3943 -1.6600 12.1462 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.7519 1.9298 0.9315 30 1 3.1264 1.4437 -0.0897 31 1 1.6053 1.9816 -0.8417 32 1 1.6139 -1.7237 1.2894 33 1 1.7422 -0.1641 2.1375 34 1 3.1634 -2.4021 -0.1568 35 1 4.1639 -1.0675 -0.7964 36 1 5.0618 -3.4875 0.5220 37 1 6.0613 -2.1343 -0.0859 38 1 5.7825 -2.7552 2.6253 39 1 6.1674 -1.1115 2.0218 40 1 4.8850 -1.7243 4.9035 41 1 5.3910 0.9835 5.5255 42 1 3.7349 0.5890 6.0449 43 1 4.6080 -1.3029 7.3896 44 1 6.2639 -0.9080 6.8698 45 1 6.0560 1.3338 7.9079 46 1 4.4000 0.9396 8.4281 47 1 5.9548 2.3904 11.4345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336330524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:52 Heat of formation + Delta-G solvation = -62.863578 kcal Electronic energy + Delta-G solvation = -22448.292607 eV Core-core repulsion = 19243.732523 eV Total energy + Delta-G solvation = -3204.560084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24389 -38.27289 -35.80590 -35.29605 -33.28669 -31.47680 -31.20923 -29.56288 -27.16889 -26.61775 -25.55789 -23.51758 -22.00477 -21.61704 -20.64922 -19.62194 -19.59231 -17.27268 -16.66559 -16.31238 -15.53950 -15.20536 -14.96027 -14.73653 -14.51495 -14.34983 -14.03831 -13.48657 -13.39207 -13.05149 -12.99182 -12.36212 -12.27992 -12.06160 -12.01666 -11.82966 -11.70678 -11.55894 -11.48131 -11.04193 -10.91535 -10.88683 -10.83064 -10.71810 -10.64104 -10.59192 -9.85517 -9.75017 -9.32087 -9.10783 -8.71149 -8.53064 -8.37107 -6.01700 -4.04836 2.86014 3.20558 3.30635 3.37041 3.39798 3.92176 4.34652 4.37181 4.44475 4.65169 4.73480 4.82495 4.92738 4.98688 5.04954 5.21615 5.28355 5.34031 5.43765 5.48750 5.52969 5.53866 5.59317 5.68738 5.75068 5.77287 5.80254 5.83655 5.87066 5.92791 6.00101 6.18456 6.23155 6.41812 6.53490 6.61631 6.63460 6.85523 6.87813 7.02155 7.63927 7.76792 7.79654 7.97233 8.37998 8.51405 9.01940 9.59321 11.09624 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.002769 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.224513 B =10109.689628 C =10765.965359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.135 4.135 4 C 0.053 3.947 5 N -0.489 5.489 6 C 0.036 3.964 7 C -0.130 4.130 8 C -0.112 4.112 9 C 0.044 3.956 10 H 0.075 0.925 11 C 0.517 3.483 12 O -0.522 6.522 13 N -0.729 5.729 14 C 0.119 3.881 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.396 0.604 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 -9.764 -23.327 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.192 4.192 4 C -0.075 4.075 5 N -0.213 5.213 6 C -0.092 4.092 7 C -0.168 4.168 8 C -0.150 4.150 9 C -0.068 4.068 10 H 0.092 0.908 11 C 0.301 3.699 12 O -0.397 6.397 13 N -0.380 5.380 14 C -0.004 4.004 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.010 -8.205 -23.409 25.523 hybrid contribution 0.128 -1.676 1.152 2.038 sum -5.881 -9.882 -22.257 25.052 Atomic orbital electron populations 1.21830 0.95266 1.01386 1.02045 1.21069 0.95027 0.97534 0.97150 1.21678 1.01950 0.94536 1.01042 1.22409 0.86749 0.98609 0.99744 1.64416 1.10455 1.45825 1.00579 1.22900 0.96226 0.94760 0.95280 1.22400 0.98163 0.99842 0.96380 1.22437 0.95040 1.01362 0.96199 1.22732 0.97723 0.94847 0.91457 0.90764 1.20173 0.77765 0.89173 0.82821 1.90698 1.47724 1.19538 1.81690 1.46191 1.66257 1.13874 1.11720 1.21605 1.01348 0.91283 0.86157 1.21880 0.99510 1.00233 0.94185 1.19029 0.97498 0.93568 0.91296 1.21204 1.42955 0.95816 0.96086 0.92668 1.25033 0.95642 0.94861 0.98949 1.69968 1.48356 1.06714 1.28240 0.86583 0.79178 0.79511 0.82651 1.20649 1.21203 1.19909 0.92449 0.92534 0.93076 0.91635 0.92567 0.91666 0.93864 0.95165 0.89984 0.93710 0.90079 0.91275 0.90618 0.90207 0.90009 0.77087 0.91848 0.91941 0.92817 0.92760 0.96281 0.96306 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.16 0.34 -0.87 16 2 C -0.09 -0.85 2.87 -90.62 -0.26 -1.11 16 3 C -0.13 -1.46 9.01 37.16 0.33 -1.13 16 4 C 0.05 0.58 3.96 -3.82 -0.02 0.56 16 5 N -0.49 -5.51 4.10 -223.99 -0.92 -6.43 16 6 C 0.04 0.31 5.53 -2.76 -0.02 0.29 16 7 C -0.13 -0.96 6.93 -25.38 -0.18 -1.13 16 8 C -0.11 -1.00 6.48 -24.87 -0.16 -1.17 16 9 C 0.04 0.49 2.71 -66.94 -0.18 0.31 16 10 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 11 C 0.52 7.71 6.97 -10.99 -0.08 7.64 16 12 O -0.52 -9.95 15.84 5.56 0.09 -9.86 16 13 N -0.73 -10.41 5.55 -60.30 -0.33 -10.74 16 14 C 0.12 2.11 5.68 -4.04 -0.02 2.09 16 15 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.57 7.21 -51.93 -0.37 0.20 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.03 0.29 7.94 -51.93 -0.41 -0.12 16 33 H 0.08 1.09 7.42 -51.93 -0.39 0.70 16 34 H 0.04 0.34 7.64 -51.93 -0.40 -0.05 16 35 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.40 4.52 8.47 -40.82 -0.35 4.17 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -32.14 374.55 -9.77 -41.91 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -9.04 Total: -0.87 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.92 Total: -9.94 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.52 Total: -43.36 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.14 -9.77 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336330524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.957 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds