Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47136 * 185.09262 * 3 2 1 5 5 H 1.08996 * 109.99865 * 53.70397 * 4 3 2 6 6 C 1.54336 * 109.98717 * 292.67027 * 4 3 2 7 7 C 1.55158 * 103.01814 * 218.66749 * 6 4 3 8 8 C 1.54904 * 101.58293 * 35.31014 * 7 6 4 9 9 N 1.47018 * 109.88431 * 174.80602 * 4 3 2 10 10 C 1.34774 * 125.64721 * 298.39454 * 9 4 3 11 11 O 1.21587 * 120.00195 * 354.67644 * 10 9 4 12 12 N 1.34781 * 120.00373 * 174.68123 * 10 9 4 13 13 C 1.46496 * 120.00063 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46710 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47187 * 299.99551 * 14 13 12 16 16 C 1.53005 * 109.47420 * 60.00047 * 14 13 12 17 17 C 1.50701 * 109.46828 * 179.97438 * 14 13 12 18 18 H 1.08000 * 120.00462 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99892 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99878 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99785 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46910 * 89.99933 * 21 19 17 23 23 H 1.48496 * 109.47048 * 209.99812 * 21 19 17 24 24 H 1.48496 * 109.47271 * 330.00308 * 21 19 17 25 25 H 1.09000 * 109.47371 * 300.00014 * 1 2 3 26 26 H 1.09000 * 109.46884 * 59.99811 * 1 2 3 27 27 H 1.09002 * 109.47629 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46751 * 239.99571 * 2 1 3 29 29 H 1.09000 * 109.46884 * 120.00189 * 2 1 3 30 30 H 1.08993 * 109.46892 * 65.08631 * 3 2 1 31 31 H 1.09000 * 109.46501 * 305.09055 * 3 2 1 32 32 H 1.09005 * 110.85263 * 100.20145 * 6 4 3 33 33 H 1.08997 * 110.51710 * 336.97781 * 6 4 3 34 34 H 1.08995 * 111.00364 * 277.23077 * 7 6 4 35 35 H 1.09006 * 111.00286 * 153.38653 * 7 6 4 36 36 H 1.09003 * 110.36765 * 204.15444 * 8 7 6 37 37 H 1.08996 * 110.46298 * 81.87626 * 8 7 6 38 38 H 0.96997 * 119.99381 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47190 * 299.99566 * 13 12 10 40 40 H 1.08999 * 109.47541 * 59.99858 * 13 12 10 41 41 H 1.08997 * 109.47038 * 60.00677 * 15 14 13 42 42 H 1.09007 * 109.46576 * 180.02562 * 15 14 13 43 43 H 1.08999 * 109.47338 * 300.00055 * 15 14 13 44 44 H 1.09002 * 109.47097 * 59.99230 * 16 14 13 45 45 H 1.08997 * 109.47115 * 179.97438 * 16 14 13 46 46 H 1.08999 * 109.46581 * 300.00012 * 16 14 13 47 47 H 0.97001 * 119.99411 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5647 1.4443 -0.1280 5 1 3.8663 0.8632 -0.9994 6 6 4.2016 0.8466 1.1443 7 6 5.4518 1.7394 1.3618 8 6 4.9327 3.1213 0.8925 9 7 4.0542 2.8249 -0.2538 10 6 3.7462 3.6799 -1.2491 11 8 3.0827 3.2992 -2.1941 12 7 4.1738 4.9570 -1.1969 13 6 3.8385 5.8865 -2.2785 14 6 4.4403 7.2601 -1.9753 15 6 3.8714 7.7862 -0.6560 16 6 5.9612 7.1369 -1.8619 17 6 4.0959 8.2161 -3.0882 18 1 3.5064 7.8779 -3.9275 19 6 4.5335 9.5226 -3.0348 20 7 5.2518 9.9342 -2.0130 21 14 4.1072 10.7073 -4.4147 22 1 2.8230 11.3859 -4.1053 23 1 5.1838 11.7215 -4.5466 24 1 3.9757 9.9564 -5.6890 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7530 1.9293 0.9320 31 1 1.6041 1.9819 -0.8409 32 1 4.4925 -0.1913 0.9818 33 1 3.5175 0.9287 1.9888 34 1 6.2840 1.4038 0.7430 35 1 5.7352 1.7652 2.4141 36 1 5.7643 3.7528 0.5797 37 1 4.3674 3.6063 1.6882 38 1 4.7029 5.2608 -0.4429 39 1 4.2434 5.5114 -3.2184 40 1 2.7551 5.9746 -2.3590 41 1 4.1209 7.0947 0.1487 42 1 4.2999 8.7651 -0.4404 43 1 2.7880 7.8741 -0.7369 44 1 6.3664 6.7619 -2.8017 45 1 6.3899 8.1155 -1.6463 46 1 6.2106 6.4452 -1.0572 47 1 5.5593 10.8534 -1.9754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341702767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = -52.023500 kcal Electronic energy + Delta-G solvation = -23358.994355 eV Core-core repulsion = 20154.904332 eV Total energy + Delta-G solvation = -3204.090023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15279 -37.86930 -36.15324 -34.79073 -33.17145 -31.55547 -30.52939 -29.70923 -25.75645 -25.69743 -25.56010 -24.85671 -22.69582 -21.87113 -20.67428 -19.31095 -18.75017 -17.76219 -16.41088 -15.81099 -15.26356 -15.17200 -14.74584 -14.50224 -13.94715 -13.81803 -13.49193 -13.24776 -12.97868 -12.87448 -12.74859 -12.47763 -12.15195 -12.02353 -11.76495 -11.35495 -11.31902 -11.16564 -11.05196 -11.02222 -10.85127 -10.78720 -10.66796 -10.48347 -10.34820 -10.17871 -9.64360 -9.59875 -9.27177 -8.76328 -8.58496 -8.37423 -8.05528 -5.99916 -4.09622 2.98147 3.30078 3.36888 3.41520 3.67126 4.31885 4.42997 4.46057 4.67794 4.73351 4.94039 4.98173 5.07296 5.26675 5.26884 5.27863 5.48149 5.52886 5.61048 5.68737 5.72207 5.76499 5.83003 5.89155 6.00898 6.12011 6.18778 6.28644 6.35044 6.40488 6.53476 6.59488 6.84294 6.85631 6.97391 7.06261 7.15699 7.38974 7.49604 7.58649 7.72233 8.03752 8.15276 8.41186 8.50669 8.90376 9.11505 9.55964 11.01575 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026605 B = 0.003707 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.164683 B = 7551.941816 C = 8209.214465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.132 4.132 4 C 0.158 3.842 5 H 0.071 0.929 6 C -0.127 4.127 7 C -0.131 4.131 8 C 0.098 3.902 9 N -0.640 5.640 10 C 0.716 3.284 11 O -0.595 6.595 12 N -0.732 5.732 13 C 0.150 3.850 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -16.810 9.929 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.170 4.170 4 C 0.054 3.946 5 H 0.089 0.911 6 C -0.165 4.165 7 C -0.169 4.169 8 C -0.025 4.025 9 N -0.379 5.379 10 C 0.418 3.582 11 O -0.474 6.474 12 N -0.386 5.386 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.373 -16.811 9.183 19.205 hybrid contribution 0.064 0.903 -0.317 0.959 sum -1.309 -15.908 8.866 18.259 Atomic orbital electron populations 1.21760 0.95922 1.01244 1.01985 1.21458 0.95893 0.96583 1.01714 1.22010 0.94985 0.97040 1.02988 1.21340 0.93632 0.81967 0.97664 0.91127 1.22739 0.97058 0.99383 0.97344 1.22741 0.97790 0.94584 1.01808 1.22231 0.93694 0.97572 0.89011 1.47679 1.51806 1.13619 1.24827 1.15593 0.80261 0.80862 0.81494 1.90868 1.45168 1.77385 1.33985 1.45543 1.57592 1.08557 1.26927 1.21580 0.99226 0.89084 0.87381 1.18360 0.92290 0.88988 0.94820 1.21810 0.98890 1.02169 0.95789 1.21813 0.98448 1.01508 0.96899 1.20998 1.33331 0.94537 1.05448 0.92404 1.24881 0.94811 0.98025 0.95816 1.69810 1.36350 1.16793 1.29590 0.86568 0.77966 0.80737 0.82585 1.20725 1.21297 1.19884 0.92920 0.92569 0.92978 0.92001 0.92194 0.92148 0.90268 0.90228 0.90534 0.90619 0.89997 0.90886 0.91763 0.77215 0.93016 0.93008 0.97641 0.89661 0.95481 0.95466 0.89627 0.97685 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.14 5.71 -26.73 -0.15 -1.30 16 3 C -0.13 -1.62 4.69 -26.73 -0.13 -1.74 16 4 C 0.16 1.94 2.86 -66.95 -0.19 1.75 16 5 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.13 -1.08 5.72 -24.89 -0.14 -1.22 16 7 C -0.13 -1.09 7.09 -24.58 -0.17 -1.27 16 8 C 0.10 1.10 6.47 -2.53 -0.02 1.08 16 9 N -0.64 -9.40 3.06 -168.69 -0.52 -9.92 16 10 C 0.72 13.68 8.21 -86.92 -0.71 12.97 16 11 O -0.60 -13.46 15.53 5.29 0.08 -13.38 16 12 N -0.73 -14.00 4.92 -65.23 -0.32 -14.33 16 13 C 0.15 3.34 4.50 -4.04 -0.02 3.32 16 14 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.50 -13.42 8.01 -34.44 -0.28 -13.70 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.81 9.35 55.43 0.52 -23.29 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 30 H 0.06 0.72 8.02 -51.93 -0.42 0.31 16 31 H 0.08 1.26 6.89 -51.93 -0.36 0.90 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.59 7.76 -51.93 -0.40 0.19 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 6.87 4.77 -40.82 -0.19 6.67 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 42 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 2.16 6.07 -51.93 -0.31 1.84 16 46 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -29.43 359.04 -9.40 -38.83 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.54 Total: 4.34 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.01 Total: -3.56 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.32 Total: -47.54 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.43 -9.40 -38.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341702767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.195 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds