Wall clock time and date at job start Tue Mar 31 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47574 * 2 1 4 4 C 1.53006 * 109.46901 * 119.99858 * 2 1 3 5 5 C 1.53003 * 109.47247 * 239.99278 * 2 1 3 6 6 H 1.08998 * 112.96889 * 283.35266 * 5 2 1 7 7 C 1.53948 * 113.76250 * 55.02764 * 5 2 1 8 8 C 1.53947 * 86.28994 * 137.90635 * 7 5 2 9 9 N 1.47582 * 86.11840 * 336.39261 * 8 7 5 10 10 C 1.34774 * 134.49849 * 204.64355 * 9 8 7 11 11 O 1.21581 * 120.00366 * 185.25572 * 10 9 8 12 12 N 1.34783 * 119.99562 * 5.24971 * 10 9 8 13 13 C 1.46499 * 119.99586 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46581 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47182 * 299.99674 * 14 13 12 16 16 C 1.52991 * 109.47577 * 59.99949 * 14 13 12 17 17 C 1.50701 * 109.46661 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00232 * 355.60445 * 17 14 13 19 19 C 1.37878 * 119.99796 * 175.60830 * 17 14 13 20 20 N 1.31513 * 120.00053 * 5.37802 * 19 17 14 21 21 Si 1.86797 * 120.00132 * 185.37127 * 19 17 14 22 22 H 1.48505 * 109.46893 * 94.99923 * 21 19 17 23 23 H 1.48498 * 109.47657 * 214.99750 * 21 19 17 24 24 H 1.48503 * 109.47206 * 335.00403 * 21 19 17 25 25 H 1.09009 * 109.46992 * 59.99953 * 1 2 3 26 26 H 1.09002 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47251 * 300.00585 * 1 2 3 28 28 H 1.09003 * 109.47309 * 59.99451 * 3 2 1 29 29 H 1.08997 * 109.47639 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47295 * 299.99596 * 3 2 1 31 31 H 1.09000 * 109.47051 * 55.02395 * 4 2 1 32 32 H 1.08994 * 109.47171 * 175.02171 * 4 2 1 33 33 H 1.08999 * 109.47083 * 295.02399 * 4 2 1 34 34 H 1.09000 * 113.74338 * 252.25063 * 7 5 2 35 35 H 1.08998 * 113.74491 * 23.56320 * 7 5 2 36 36 H 1.09005 * 113.77115 * 90.69168 * 8 7 5 37 37 H 1.09001 * 113.77307 * 222.09062 * 8 7 5 38 38 H 0.96996 * 119.99968 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.46986 * 299.99490 * 13 12 10 40 40 H 1.08999 * 109.47297 * 59.99970 * 13 12 10 41 41 H 1.09000 * 109.47317 * 64.85768 * 15 14 13 42 42 H 1.08998 * 109.47135 * 184.86332 * 15 14 13 43 43 H 1.09010 * 109.47248 * 304.86181 * 15 14 13 44 44 H 1.09004 * 109.46929 * 59.99645 * 16 14 13 45 45 H 1.09000 * 109.47521 * 179.97438 * 16 14 13 46 46 H 1.09005 * 109.47120 * 300.00072 * 16 14 13 47 47 H 0.96998 * 120.00081 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0400 -0.7214 -1.2492 6 1 1.9633 -1.8062 -1.1750 7 6 1.4854 -0.1487 -2.5661 8 6 2.9129 -0.3080 -3.1201 9 7 3.3576 -0.2462 -1.7142 10 6 4.5057 0.1037 -1.1011 11 8 4.6197 -0.0356 0.1013 12 7 5.5274 0.6079 -1.8211 13 6 6.7756 0.9877 -1.1547 14 6 7.7631 1.5278 -2.1912 15 6 8.0505 0.4458 -3.2341 16 6 7.1597 2.7531 -2.8806 17 6 9.0473 1.9179 -1.5059 18 1 9.1245 1.8601 -0.4302 19 6 10.1236 2.3487 -2.2521 20 7 9.9975 2.5203 -3.5499 21 14 11.7610 2.6887 -1.4199 22 1 12.6260 1.4857 -1.5193 23 1 12.4280 3.8344 -2.0889 24 1 11.5309 3.0161 0.0102 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6056 -1.7199 1.2950 32 1 3.1262 -0.7992 1.2059 33 1 1.7512 -0.1585 2.1370 34 1 0.7522 -0.7935 -3.0508 35 1 1.1572 0.8879 -2.4902 36 1 3.0944 -1.2715 -3.5964 37 1 3.2466 0.5360 -3.7239 38 1 5.4366 0.7186 -2.7804 39 1 6.5709 1.7590 -0.4121 40 1 7.2053 0.1149 -0.6632 41 1 7.1387 0.2247 -3.7890 42 1 8.8181 0.7993 -3.9224 43 1 8.3993 -0.4577 -2.7337 44 1 6.9549 3.5239 -2.1376 45 1 7.8633 3.1381 -3.6187 46 1 6.2309 2.4705 -3.3763 47 1 10.7548 2.8230 -4.0750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341806043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:34 Heat of formation + Delta-G solvation = -7.728262 kcal Electronic energy + Delta-G solvation = -23903.933604 eV Core-core repulsion = 20701.764367 eV Total energy + Delta-G solvation = -3202.169238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.73530 -38.19175 -36.15104 -35.48035 -33.09786 -30.91872 -29.25292 -27.11008 -27.05431 -25.94484 -25.69960 -25.43358 -24.52951 -21.87228 -20.06963 -18.85237 -18.50877 -17.50775 -16.09737 -15.92052 -15.59974 -14.78749 -14.70427 -14.14741 -13.90405 -13.80895 -13.29974 -13.10580 -12.93273 -12.72056 -12.39048 -12.20833 -12.14779 -12.05226 -11.65997 -11.54816 -11.39600 -11.24855 -11.16171 -10.83646 -10.68821 -10.63108 -10.55628 -10.35951 -10.25317 -10.16657 -9.60578 -9.43027 -9.24303 -8.78381 -8.59981 -8.35623 -8.05080 -6.00791 -4.10098 2.81610 3.29413 3.36813 3.41152 3.68673 4.26235 4.38337 4.48902 4.72017 4.88374 4.96656 5.05524 5.17821 5.25731 5.39008 5.45530 5.52353 5.56102 5.63997 5.76807 5.85352 5.92602 5.96124 6.02445 6.17778 6.24265 6.28180 6.35156 6.39998 6.54092 6.59954 6.68248 6.85266 6.85766 6.97785 7.05688 7.20770 7.40887 7.57376 7.65528 7.72411 8.03527 8.15535 8.41653 8.54485 8.89950 9.16347 9.55291 11.00539 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.003907 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.056020 B = 7165.545248 C = 7568.230318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.154 4.154 5 C 0.167 3.833 6 H 0.084 0.916 7 C -0.149 4.149 8 C 0.099 3.901 9 N -0.662 5.662 10 C 0.723 3.277 11 O -0.589 6.589 12 N -0.732 5.732 13 C 0.152 3.848 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.392 0.608 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.089 0.911 43 H 0.024 0.976 44 H 0.026 0.974 45 H 0.082 0.918 46 H 0.005 0.995 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.163 -5.186 -0.504 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.211 4.211 5 C 0.063 3.937 6 H 0.102 0.898 7 C -0.187 4.187 8 C -0.024 4.024 9 N -0.403 5.403 10 C 0.426 3.574 11 O -0.469 6.469 12 N -0.385 5.385 13 C 0.029 3.971 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.184 4.184 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.226 0.774 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.107 0.893 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.100 0.900 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.703 -5.145 0.341 18.438 hybrid contribution 0.908 0.158 -0.109 0.929 sum -16.794 -4.987 0.233 17.521 Atomic orbital electron populations 1.21835 0.94430 1.01493 1.01743 1.20585 0.94796 0.96393 0.94822 1.21960 1.03585 0.94145 1.00272 1.22098 1.04883 0.98366 0.95787 1.22676 0.79383 0.97749 0.93932 0.89777 1.23645 0.96289 1.02701 0.96094 1.23032 0.92430 1.01725 0.85237 1.49252 1.11978 1.71196 1.07874 1.15553 0.78534 0.78257 0.85038 1.90781 1.81017 1.62316 1.12743 1.45477 1.14734 1.67289 1.11036 1.21572 0.81257 0.98357 0.95921 1.18363 0.92332 0.92206 0.91609 1.21823 0.99482 0.97489 1.00115 1.21800 0.97329 0.98757 1.00528 1.21003 0.96091 1.43877 0.93299 0.92402 1.24875 0.98698 0.95063 0.94885 1.69813 1.30648 1.46569 1.05378 0.86569 0.83911 0.77763 0.79707 1.20768 1.21315 1.19852 0.92609 0.92816 0.92582 0.93490 0.90536 0.93514 0.93882 0.88888 0.93458 0.90126 0.88833 0.90254 0.90419 0.77359 0.93101 0.93047 0.97604 0.89260 0.95713 0.95481 0.89957 0.97652 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.21 37.15 0.31 -0.92 16 2 C -0.07 -0.77 0.57 -154.51 -0.09 -0.85 16 3 C -0.14 -1.94 7.74 37.15 0.29 -1.65 16 4 C -0.15 -2.05 8.36 37.16 0.31 -1.74 16 5 C 0.17 1.89 3.58 -66.86 -0.24 1.65 16 6 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 7 C -0.15 -1.26 6.62 -25.80 -0.17 -1.43 16 8 C 0.10 1.00 8.45 -2.97 -0.03 0.98 16 9 N -0.66 -9.26 2.91 -176.89 -0.52 -9.78 16 10 C 0.72 13.22 7.05 -86.91 -0.61 12.61 16 11 O -0.59 -12.49 12.53 5.29 0.07 -12.43 16 12 N -0.73 -13.71 4.99 -65.22 -0.33 -14.03 16 13 C 0.15 3.33 4.50 -4.04 -0.02 3.31 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -3.02 8.03 37.16 0.30 -2.72 16 16 C -0.13 -2.89 8.12 37.15 0.30 -2.59 16 17 C -0.50 -13.36 8.01 -34.44 -0.28 -13.63 16 18 H 0.06 1.55 7.75 -52.49 -0.41 1.15 16 19 C 0.07 1.74 5.12 -17.82 -0.09 1.65 16 20 N -0.89 -23.72 9.36 55.43 0.52 -23.20 16 21 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.05 0.44 7.12 -51.92 -0.37 0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.32 4.48 -51.93 -0.23 1.09 16 30 H 0.05 0.58 6.76 -51.93 -0.35 0.23 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.58 5.16 -51.93 -0.27 1.31 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.80 6.45 -51.93 -0.34 0.47 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.39 6.79 5.80 -40.82 -0.24 6.56 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.00 0.10 7.00 -51.93 -0.36 -0.26 16 42 H 0.09 2.27 5.81 -51.93 -0.30 1.96 16 43 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.07 6.22 -51.93 -0.32 1.75 16 46 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 47 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -28.67 349.07 -8.29 -36.96 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.17 Total: 5.47 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.10 Total: -4.10 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.32 Total: -47.01 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.67 -8.29 -36.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341806043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.228 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds