Wall clock time and date at job start Tue Mar 31 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47238 * 239.99346 * 2 1 3 5 5 C 1.53001 * 109.46906 * 119.99635 * 2 1 3 6 6 H 1.08998 * 112.74293 * 309.04241 * 5 2 1 7 7 C 1.53499 * 113.46710 * 178.22522 * 5 2 1 8 8 C 1.53750 * 83.25989 * 218.98107 * 7 5 2 9 9 N 1.47066 * 113.47117 * 79.79040 * 5 2 1 10 10 C 1.34779 * 136.05551 * 321.86822 * 9 5 2 11 11 O 1.21588 * 119.99923 * 354.77435 * 10 9 5 12 12 N 1.34774 * 120.00133 * 174.77567 * 10 9 5 13 13 C 1.46501 * 120.00087 * 179.72225 * 12 10 9 14 14 C 1.53003 * 109.47098 * 180.27611 * 13 12 10 15 15 C 1.52999 * 109.47134 * 300.00160 * 14 13 12 16 16 C 1.52998 * 109.47113 * 59.99857 * 14 13 12 17 17 C 1.50696 * 109.47171 * 179.97438 * 14 13 12 18 18 H 1.08006 * 119.99742 * 359.97438 * 17 14 13 19 19 C 1.37872 * 120.00041 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00144 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99954 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47234 * 120.00193 * 21 19 17 24 24 H 1.48497 * 109.47404 * 240.00055 * 21 19 17 25 25 H 1.08999 * 109.47377 * 305.20576 * 1 2 3 26 26 H 1.08994 * 109.47201 * 65.20692 * 1 2 3 27 27 H 1.09003 * 109.46691 * 185.20848 * 1 2 3 28 28 H 1.09011 * 109.46758 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46910 * 299.99655 * 3 2 1 30 30 H 1.08989 * 109.47865 * 59.99778 * 3 2 1 31 31 H 1.08998 * 109.47164 * 305.48151 * 4 2 1 32 32 H 1.08999 * 109.46670 * 65.47858 * 4 2 1 33 33 H 1.08999 * 109.46983 * 185.47530 * 4 2 1 34 34 H 1.08997 * 114.20319 * 332.74062 * 7 5 2 35 35 H 1.09003 * 114.20447 * 105.36792 * 7 5 2 36 36 H 1.08994 * 113.46981 * 271.50616 * 8 7 5 37 37 H 1.09005 * 113.55298 * 140.98412 * 8 7 5 38 38 H 0.97006 * 119.99638 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.46693 * 300.27514 * 13 12 10 40 40 H 1.08998 * 109.47027 * 60.27397 * 13 12 10 41 41 H 1.09002 * 109.47256 * 59.99588 * 15 14 13 42 42 H 1.08996 * 109.47196 * 180.02562 * 15 14 13 43 43 H 1.08998 * 109.46858 * 300.00132 * 15 14 13 44 44 H 1.09006 * 109.47383 * 60.00035 * 16 14 13 45 45 H 1.08999 * 109.47143 * 179.97438 * 16 14 13 46 46 H 1.08997 * 109.47590 * 299.99928 * 16 14 13 47 47 H 0.97003 * 120.00536 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2493 6 1 1.5834 -0.3491 2.1665 7 6 3.5706 -0.8126 1.3204 8 6 3.2801 -2.2175 1.8733 9 7 2.0098 -2.1869 1.1329 10 6 1.1801 -3.1005 0.5911 11 8 0.1191 -2.7496 0.1118 12 7 1.5263 -4.4029 0.5805 13 6 0.6217 -5.3967 -0.0029 14 6 1.2460 -6.7883 0.1188 15 6 2.5820 -6.8149 -0.6265 16 6 1.4791 -7.1153 1.5951 17 6 0.3153 -7.8106 -0.4808 18 1 -0.6275 -7.4989 -0.9058 19 6 0.6672 -9.1436 -0.4868 20 7 1.8149 -9.5231 0.0311 21 14 -0.4863 -10.4107 -1.2307 22 1 -1.7034 -9.7317 -1.7432 23 1 0.1988 -11.1078 -2.3487 24 1 -0.8710 -11.4000 -0.1922 25 1 -0.3634 0.5924 0.8397 26 1 -0.3633 0.4309 -0.9329 27 1 -0.3633 -1.0235 0.0933 28 1 3.1301 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8898 31 1 1.5988 -1.7168 -1.2995 32 1 1.7590 -0.1541 -2.1364 33 1 3.1256 -0.8071 -1.2014 34 1 4.0643 -0.8044 0.3487 35 1 4.0259 -0.1330 2.0408 36 1 3.1512 -2.2400 2.9554 37 1 3.9732 -2.9786 1.5149 38 1 2.3729 -4.6828 0.9626 39 1 -0.3300 -5.3777 0.5281 40 1 0.4557 -5.1636 -1.0547 41 1 3.2550 -6.0754 -0.1924 42 1 3.0265 -7.8063 -0.5401 43 1 2.4159 -6.5818 -1.6782 44 1 0.5273 -7.0963 2.1262 45 1 1.9234 -8.1068 1.6819 46 1 2.1521 -6.3760 2.0293 47 1 2.0627 -10.4609 0.0266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341806045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:37 Heat of formation + Delta-G solvation = -1.572795 kcal Electronic energy + Delta-G solvation = -23899.457196 eV Core-core repulsion = 20697.554879 eV Total energy + Delta-G solvation = -3201.902317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84909 -38.26724 -36.17621 -35.50554 -33.11627 -30.93385 -29.30779 -27.16398 -27.01086 -25.79728 -25.70598 -25.42460 -24.56141 -21.99391 -20.07170 -18.88570 -18.53358 -17.52480 -16.00487 -15.95979 -15.61437 -14.81160 -14.68199 -14.19153 -13.95630 -13.83371 -13.22931 -13.16450 -12.92330 -12.69302 -12.50666 -12.22620 -12.13669 -12.07660 -11.69226 -11.55676 -11.37057 -11.25842 -11.18181 -10.86149 -10.68017 -10.59501 -10.56945 -10.36222 -10.17681 -10.12012 -9.61035 -9.33432 -9.19779 -8.76214 -8.64402 -8.38833 -8.07125 -6.00734 -4.10483 2.82169 3.28224 3.36826 3.41960 3.65358 4.23163 4.36721 4.48137 4.74074 4.88885 4.94706 5.05066 5.19402 5.26177 5.38983 5.43875 5.52547 5.55015 5.65783 5.80460 5.82428 5.91545 5.99033 6.04924 6.18582 6.26533 6.28666 6.34698 6.39205 6.53191 6.56317 6.73244 6.84965 6.88011 6.96891 7.05190 7.25435 7.42280 7.57741 7.66143 7.72239 8.02795 8.14793 8.40715 8.52690 8.89869 9.16442 9.55277 11.00724 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.003899 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.215535 B = 7180.313992 C = 7583.189152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.067 4.067 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.164 3.836 6 H 0.084 0.916 7 C -0.154 4.154 8 C 0.099 3.901 9 N -0.664 5.664 10 C 0.729 3.271 11 O -0.585 6.585 12 N -0.730 5.730 13 C 0.152 3.848 14 C 0.056 3.944 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.012 17.388 3.690 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.068 4.068 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.060 3.940 6 H 0.101 0.899 7 C -0.192 4.192 8 C -0.025 4.025 9 N -0.405 5.405 10 C 0.433 3.567 11 O -0.465 6.465 12 N -0.384 5.384 13 C 0.029 3.971 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.227 0.773 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.149 17.238 3.243 18.281 hybrid contribution -0.192 -0.843 -0.093 0.869 sum 4.957 16.396 3.151 17.416 Atomic orbital electron populations 1.22430 0.93740 1.06722 0.99953 1.20614 0.96959 0.94524 0.94698 1.21819 1.00696 0.95316 1.01630 1.21880 1.00114 1.01561 0.95940 1.22526 0.94056 0.79664 0.97739 0.89868 1.23609 0.96154 0.96886 1.02543 1.22872 0.85329 0.97513 0.96803 1.48807 1.25274 1.06972 1.59409 1.15393 0.82078 0.80356 0.78838 1.90653 1.23273 1.78557 1.54006 1.45472 1.24019 1.04720 1.64179 1.21577 0.91543 0.87526 0.96475 1.18368 0.93724 0.89038 0.93392 1.21801 0.97459 1.01598 0.97733 1.21806 0.98246 1.01939 0.96627 1.21026 1.03750 0.91207 1.38244 0.92367 1.24876 0.95198 0.98322 0.95141 1.69815 1.21201 1.16122 1.45365 0.86521 0.81109 0.81413 0.78879 1.19743 1.21084 1.21087 0.94218 0.93792 0.86960 0.92704 0.92632 0.92863 0.91369 0.93399 0.93233 0.88465 0.89722 0.90300 0.90742 0.77296 0.93027 0.92996 0.97650 0.89689 0.95497 0.95515 0.89674 0.97665 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 8.36 37.16 0.31 -2.09 16 2 C -0.07 -0.80 0.58 -154.51 -0.09 -0.89 16 3 C -0.14 -1.24 8.29 37.16 0.31 -0.93 16 4 C -0.14 -1.82 7.81 37.16 0.29 -1.53 16 5 C 0.16 1.86 3.29 -72.39 -0.24 1.62 16 6 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.15 -1.29 6.94 -26.08 -0.18 -1.47 16 8 C 0.10 0.99 8.30 -8.37 -0.07 0.92 16 9 N -0.66 -9.26 3.02 -183.03 -0.55 -9.81 16 10 C 0.73 13.27 7.27 -86.92 -0.63 12.63 16 11 O -0.58 -12.30 12.26 5.29 0.06 -12.24 16 12 N -0.73 -13.59 4.96 -65.22 -0.32 -13.91 16 13 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 17 C -0.50 -13.30 8.01 -34.44 -0.28 -13.58 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 21 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.11 1.99 4.19 -52.01 -0.22 1.77 16 28 H 0.05 0.43 7.50 -51.92 -0.39 0.04 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.44 8.14 -51.94 -0.42 0.01 16 31 H 0.07 1.14 5.36 -51.93 -0.28 0.86 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.58 6.18 -51.93 -0.32 0.26 16 34 H 0.10 0.84 6.23 -51.93 -0.32 0.52 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 6.77 5.89 -40.82 -0.24 6.53 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 42 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 46 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -28.45 348.73 -8.37 -36.82 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.15 Total: 5.66 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.16 Total: -4.41 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.36 Total: -46.91 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.06 Total: -12.24 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.45 -8.37 -36.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341806045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.249 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds