Wall clock time and date at job start Tue Mar 31 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 C 1.50698 * 109.47184 * 299.99369 * 4 2 1 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99944 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.46866 * 90.00390 * 9 7 5 11 11 H 1.48502 * 109.47245 * 210.00175 * 9 7 5 12 12 H 1.48494 * 109.47271 * 330.00312 * 9 7 5 13 13 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 14 14 N 1.46496 * 109.47294 * 60.00514 * 13 2 1 15 15 C 1.34779 * 120.00447 * 179.97438 * 14 13 2 16 16 O 1.21284 * 119.99695 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00208 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.46999 * 179.97438 * 17 15 14 19 19 H 1.08998 * 110.01461 * 54.30203 * 18 17 15 20 20 C 1.54259 * 110.03239 * 292.90874 * 18 17 15 21 21 C 1.54968 * 104.15937 * 217.13441 * 20 18 17 22 22 C 1.54890 * 102.77810 * 37.89168 * 21 20 18 23 23 C 1.53879 * 110.02879 * 175.69324 * 18 17 15 24 24 H 1.08998 * 110.03620 * 359.94621 * 23 18 17 25 25 N 1.46901 * 110.02752 * 238.57043 * 23 18 17 26 26 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 27 27 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 28 28 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 32 32 H 1.09001 * 109.46801 * 59.99811 * 4 2 1 33 33 H 1.09001 * 109.46998 * 179.97438 * 4 2 1 34 34 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47289 * 180.02562 * 13 2 1 36 36 H 1.09004 * 109.47261 * 300.00382 * 13 2 1 37 37 H 0.97006 * 119.99755 * 359.97438 * 14 13 2 38 38 H 1.09001 * 109.47324 * 300.00411 * 17 15 14 39 39 H 1.09004 * 109.47043 * 60.00043 * 17 15 14 40 40 H 1.09001 * 110.49249 * 335.78464 * 20 18 17 41 41 H 1.09002 * 110.48790 * 98.43037 * 20 18 17 42 42 H 1.08994 * 110.71943 * 279.57676 * 21 20 18 43 43 H 1.09003 * 110.92328 * 156.29771 * 21 20 18 44 44 H 1.08989 * 110.49035 * 203.40589 * 22 21 20 45 45 H 1.09000 * 110.60241 * 80.81124 * 22 21 20 46 46 H 1.00909 * 110.99790 * 179.97438 * 25 23 18 47 47 H 1.00899 * 111.00603 * 303.95257 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9165 0.8672 2.3806 7 6 1.8702 -0.4822 3.7320 8 7 2.6262 -1.5516 3.8527 9 14 1.2470 0.3981 5.2572 10 1 -0.0614 -0.1770 5.6607 11 1 2.2247 0.2270 6.3617 12 1 1.0822 1.8440 4.9616 13 6 2.0399 -0.7213 -1.2492 14 7 1.5517 -0.0308 -2.4454 15 6 1.8777 -0.4909 -3.6695 16 8 2.5757 -1.4766 -3.7807 17 6 1.3750 0.2191 -4.9000 18 6 1.8861 -0.5014 -6.1492 19 1 1.6142 -1.5562 -6.1090 20 6 3.4181 -0.3542 -6.2544 21 6 3.6805 -0.1993 -7.7739 22 6 2.4855 0.6683 -8.2412 23 6 1.2933 0.1481 -7.4119 24 1 0.6407 0.9760 -7.1347 25 7 0.5400 -0.8489 -8.1842 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6764 -1.7489 1.2493 33 1 3.1299 -0.7217 1.2492 34 1 2.8604 -1.8830 4.7337 35 1 3.1300 -0.7217 -1.2490 36 1 1.6765 -1.7490 -1.2492 37 1 0.9938 0.7578 -2.3564 38 1 0.2850 0.2185 -4.9000 39 1 1.7377 1.2471 -4.8999 40 1 3.7541 0.5326 -5.7171 41 1 3.9143 -1.2453 -5.8698 42 1 3.6693 -1.1707 -8.2681 43 1 4.6248 0.3139 -7.9555 44 1 2.3020 0.5232 -9.3057 45 1 2.6689 1.7211 -8.0267 46 1 0.1440 -0.4379 -9.0164 47 1 1.1197 -1.6424 -8.4132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575298779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:18 Heat of formation + Delta-G solvation = -77.685647 kcal Electronic energy + Delta-G solvation = -22680.135536 eV Core-core repulsion = 19474.932719 eV Total energy + Delta-G solvation = -3205.202818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99824 -38.58291 -36.98426 -33.54745 -32.73379 -32.15002 -31.49168 -27.43416 -27.04086 -26.52181 -26.50450 -24.82319 -22.72402 -20.99312 -20.17614 -19.75765 -18.27516 -16.81125 -16.38219 -16.14193 -15.74534 -15.28322 -15.08443 -14.90845 -14.48831 -14.00725 -13.78580 -13.51361 -13.23453 -12.94994 -12.73270 -12.52368 -12.06742 -12.03183 -11.91763 -11.49723 -11.22722 -11.12793 -11.01058 -10.90503 -10.85519 -10.82371 -10.70910 -10.63131 -10.39153 -10.24717 -9.86685 -9.66038 -9.13984 -8.94921 -8.90785 -8.65722 -8.35623 -5.99648 -4.00962 2.91061 3.30979 3.37911 3.39455 3.49589 4.21809 4.34864 4.41717 4.45727 4.71866 4.95307 5.01333 5.13586 5.27671 5.35839 5.38471 5.41443 5.43983 5.53806 5.59809 5.60775 5.64466 5.76326 5.83416 5.85649 5.92671 6.17073 6.18367 6.24303 6.31684 6.34103 6.41057 6.60290 6.63630 6.80539 6.90059 7.07381 7.08179 7.14161 7.15976 7.64615 7.77080 7.81994 7.99259 8.40796 8.52081 9.03921 9.62152 11.11859 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043571 B = 0.002796 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.470310 B =10010.321467 C =10161.936833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.128 3.872 14 N -0.724 5.724 15 C 0.506 3.494 16 O -0.544 6.544 17 C -0.133 4.133 18 C -0.068 4.068 19 H 0.089 0.911 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.160 4.160 23 C 0.088 3.912 24 H 0.082 0.918 25 N -0.842 5.842 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.397 0.603 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.338 0.662 47 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 6.162 -23.060 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.006 3.994 14 N -0.376 5.376 15 C 0.292 3.708 16 O -0.422 6.422 17 C -0.174 4.174 18 C -0.088 4.088 19 H 0.107 0.893 20 C -0.153 4.153 21 C -0.164 4.164 22 C -0.199 4.199 23 C -0.023 4.023 24 H 0.100 0.900 25 N -0.371 5.371 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.232 0.768 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.151 0.849 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.342 5.274 -22.338 23.072 hybrid contribution 0.147 1.027 0.298 1.079 sum -2.195 6.301 -22.041 23.028 Atomic orbital electron populations 1.21756 0.95296 1.01146 1.00197 1.20899 0.95455 0.95825 0.95133 1.21755 1.00488 0.95934 1.00193 1.19090 0.96329 0.95221 0.89517 1.21186 1.31128 1.12062 0.90534 0.92268 1.25018 0.95319 0.95099 0.99092 1.69968 1.36944 1.23072 1.23430 0.86649 0.78573 0.80017 0.83067 1.20767 1.21340 1.19955 1.21590 0.98786 0.95991 0.83081 1.46242 1.53316 1.32007 1.06009 1.20611 0.80571 0.84852 0.84761 1.90678 1.38068 1.26519 1.86911 1.21788 1.02440 1.00294 0.92837 1.21535 0.94899 1.00837 0.91486 0.89293 1.22433 0.95231 1.02582 0.95008 1.22518 0.97790 0.99461 0.96658 1.23219 0.97042 1.00388 0.99273 1.22167 0.92955 0.93992 0.93233 0.89965 1.58935 1.39829 1.10847 1.27449 0.91481 0.95233 0.93390 0.93425 0.95255 0.91473 0.96374 0.96382 0.93041 0.91985 0.91963 0.76788 0.88935 0.89283 0.91919 0.90462 0.91834 0.91732 0.92090 0.91278 0.84929 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.13 2.29 4.56 -4.05 -0.02 2.27 16 14 N -0.72 -10.38 4.96 -60.30 -0.30 -10.68 16 15 C 0.51 7.30 7.61 -10.99 -0.08 7.22 16 16 O -0.54 -9.89 14.78 5.55 0.08 -9.81 16 17 C -0.13 -1.36 4.83 -27.88 -0.13 -1.50 16 18 C -0.07 -0.70 2.29 -89.50 -0.20 -0.90 16 19 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 20 C -0.11 -1.20 5.40 -25.03 -0.14 -1.34 16 21 C -0.13 -1.04 6.91 -24.70 -0.17 -1.21 16 22 C -0.16 -1.13 6.52 -25.07 -0.16 -1.30 16 23 C 0.09 0.71 3.69 -66.59 -0.25 0.46 16 24 H 0.08 0.63 7.67 -51.93 -0.40 0.23 16 25 N -0.84 -6.42 9.11 -3.72 -0.03 -6.45 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 31 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.40 4.79 6.16 -40.82 -0.25 4.54 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.75 8.02 -51.93 -0.42 0.33 16 40 H 0.06 0.67 7.77 -51.93 -0.40 0.26 16 41 H 0.08 0.98 7.63 -51.93 -0.40 0.58 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.38 8.03 -51.94 -0.42 -0.04 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.34 1.98 9.06 -39.29 -0.36 1.62 16 47 H 0.34 2.47 8.97 -39.29 -0.35 2.12 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -30.70 361.99 -8.65 -39.35 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.45 Total: 4.95 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.12 Total: -13.22 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.40 Total: -42.93 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.70 -8.65 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575298779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.336 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds