Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99710 * 2 1 4 4 H 1.08998 * 109.47272 * 187.40947 * 3 2 1 5 5 C 1.53002 * 109.47203 * 307.40845 * 3 2 1 6 6 C 1.53001 * 109.46909 * 301.58017 * 5 3 2 7 7 C 1.52998 * 109.47370 * 292.39538 * 6 5 3 8 8 C 1.53004 * 109.46946 * 172.39753 * 6 5 3 9 9 C 1.50702 * 109.47074 * 67.40751 * 3 2 1 10 10 O 1.21277 * 120.00115 * 315.15378 * 9 3 2 11 11 N 1.34779 * 119.99600 * 135.15511 * 9 3 2 12 12 C 1.46496 * 119.99534 * 185.40180 * 11 9 3 13 13 C 1.50707 * 109.47041 * 90.00459 * 12 11 9 14 14 H 1.07997 * 119.99488 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00070 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47384 * 59.99999 * 17 15 13 19 19 H 1.48500 * 109.46952 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47243 * 299.99700 * 17 15 13 21 21 C 1.46502 * 120.00172 * 5.40740 * 11 9 3 22 22 C 1.53000 * 109.47108 * 88.00439 * 21 11 9 23 23 C 1.53001 * 117.49667 * 241.71206 * 22 21 11 24 24 C 1.52997 * 117.49423 * 173.05372 * 22 21 11 25 25 H 1.09003 * 109.47099 * 179.78021 * 1 2 3 26 26 H 1.08999 * 109.47290 * 299.78113 * 1 2 3 27 27 H 1.09004 * 109.46957 * 59.78020 * 1 2 3 28 28 H 1.00897 * 110.99665 * 123.95253 * 2 1 3 29 29 H 1.09002 * 109.47134 * 181.57995 * 5 3 2 30 30 H 1.08997 * 109.47271 * 61.57923 * 5 3 2 31 31 H 1.09002 * 109.47159 * 52.40080 * 6 5 3 32 32 H 1.08994 * 109.47190 * 300.00648 * 7 6 5 33 33 H 1.09006 * 109.47021 * 60.00307 * 7 6 5 34 34 H 1.08995 * 109.47506 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47184 * 175.19909 * 8 6 5 36 36 H 1.09004 * 109.47004 * 295.19601 * 8 6 5 37 37 H 1.08996 * 109.47299 * 55.19718 * 8 6 5 38 38 H 1.09006 * 109.47177 * 210.00089 * 12 11 9 39 39 H 1.09003 * 109.47815 * 329.99991 * 12 11 9 40 40 H 0.97000 * 120.00253 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46674 * 208.00667 * 21 11 9 42 42 H 1.08995 * 109.46642 * 328.00070 * 21 11 9 43 43 H 1.08994 * 115.55365 * 27.38185 * 22 21 11 44 44 H 1.09001 * 117.50006 * 0.02562 * 23 22 21 45 45 H 1.09002 * 117.50132 * 145.01933 * 23 22 21 46 46 H 1.09000 * 117.49625 * 214.97622 * 24 22 21 47 47 H 1.08996 * 117.50408 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0770 1.3456 -0.1325 5 6 1.3600 2.1616 -1.1458 6 6 1.6616 1.4651 -2.4743 7 6 3.1590 1.5622 -2.7728 8 6 0.8729 2.1434 -3.5963 9 6 1.6658 2.0360 1.3118 10 8 0.5542 1.9272 1.7843 11 7 2.6065 2.7514 1.9599 12 6 2.3242 3.2979 3.2894 13 6 2.7234 2.2942 4.3403 14 1 3.1448 1.3441 4.0470 15 6 2.5507 2.5889 5.6761 16 7 2.0380 3.7462 6.0332 17 14 3.0449 1.3445 6.9785 18 1 4.4963 1.0538 6.8601 19 1 2.7589 1.8985 8.3263 20 1 2.2717 0.0915 6.7848 21 6 3.9111 2.9824 1.3347 22 6 3.8474 4.2452 0.4732 23 6 4.1010 4.0900 -1.0276 24 6 5.1561 4.7508 -0.1370 25 1 -0.3633 -1.0277 -0.0039 26 1 -0.3634 0.5104 0.8919 27 1 -0.3633 0.5173 -0.8880 28 1 1.8305 -0.5261 0.7814 29 1 1.7714 3.1709 -1.1631 30 1 0.2812 2.2115 -0.9984 31 1 1.3713 0.4165 -2.4088 32 1 3.4492 2.6108 -2.8382 33 1 3.7209 1.0790 -1.9734 34 1 3.3737 1.0664 -3.7194 35 1 1.1518 1.7035 -4.5538 36 1 -0.1945 2.0003 -3.4279 37 1 1.0994 3.2095 -3.6065 38 1 2.8911 4.2180 3.4319 39 1 1.2587 3.5106 3.3763 40 1 1.9168 3.9537 6.9730 41 1 4.6678 3.1085 2.1090 42 1 4.1704 2.1284 0.7090 43 1 3.1165 4.9910 0.7856 44 1 4.3128 3.0882 -1.4013 45 1 3.5372 4.7340 -1.7026 46 1 5.2861 5.8293 -0.2264 47 1 6.0626 4.1840 0.0756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578751513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = -14.790714 kcal Electronic energy + Delta-G solvation = -24248.252695 eV Core-core repulsion = 21045.777206 eV Total energy + Delta-G solvation = -3202.475489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93908 -37.36277 -36.88131 -34.56268 -33.98278 -32.56520 -29.39797 -27.76767 -27.22749 -26.24466 -25.48874 -23.51317 -22.36497 -21.63551 -20.72205 -19.50247 -18.30929 -16.91200 -16.58851 -16.36816 -15.21573 -14.97726 -14.76640 -14.60622 -14.30781 -14.18235 -13.72085 -13.30782 -12.97394 -12.85244 -12.52041 -12.22848 -12.12716 -11.99421 -11.84613 -11.46371 -11.38401 -11.25283 -11.17891 -11.11479 -10.89874 -10.72111 -10.58034 -10.52018 -10.29693 -10.21885 -10.05437 -9.85736 -9.65382 -9.50795 -8.45693 -7.73778 -7.69272 -6.06729 -4.12133 3.29324 3.31897 3.34206 3.38294 3.80556 4.02417 4.42267 4.51808 4.79764 4.95061 4.99028 5.01574 5.06779 5.13496 5.26877 5.29212 5.36299 5.52014 5.60062 5.64595 5.70297 5.74792 5.82972 5.85298 5.88787 5.91980 5.97934 6.01492 6.07611 6.10555 6.14008 6.20637 6.26264 6.42275 6.46711 6.53658 6.60848 7.03927 7.14614 7.43210 7.49560 7.54096 7.89491 8.20832 8.40884 8.86731 9.06645 9.53207 11.01186 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.005543 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.740924 B = 5050.078128 C = 6028.265025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.665 5.665 3 C 0.065 3.935 4 H 0.098 0.902 5 C -0.102 4.102 6 C -0.089 4.089 7 C -0.152 4.152 8 C -0.147 4.147 9 C 0.478 3.522 10 O -0.542 6.542 11 N -0.591 5.591 12 C 0.244 3.756 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.139 3.861 22 C -0.164 4.164 23 C -0.190 4.190 24 C -0.178 4.178 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.341 0.659 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -1.866 -17.543 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 N -0.295 5.295 3 C -0.048 4.048 4 H 0.116 0.884 5 C -0.140 4.140 6 C -0.107 4.107 7 C -0.209 4.209 8 C -0.205 4.205 9 C 0.264 3.736 10 O -0.421 6.421 11 N -0.322 5.322 12 C 0.124 3.876 13 C -0.567 4.567 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.015 3.985 22 C -0.184 4.184 23 C -0.226 4.226 24 C -0.215 4.215 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.287 -1.875 -17.785 18.183 hybrid contribution 0.175 -0.247 1.839 1.864 sum 3.462 -2.123 -15.945 16.454 Atomic orbital electron populations 1.22624 0.87810 1.01235 1.03336 1.60938 1.09144 1.10944 1.48471 1.21857 1.00959 0.89428 0.92547 0.88421 1.21645 1.01143 0.98534 0.92700 1.21022 0.95283 1.01035 0.93367 1.22062 0.96174 1.01686 1.01009 1.21857 0.99945 1.00461 0.98203 1.21666 0.85115 0.79789 0.87022 1.90555 1.21591 1.60724 1.69185 1.48330 1.12743 1.51627 1.19465 1.19279 0.98110 0.93928 0.76235 1.21377 1.42137 1.02278 0.90901 0.92655 1.24927 0.95066 0.95499 0.98496 1.69924 1.44280 1.21835 1.17194 0.86571 0.78902 0.81490 0.80530 1.20210 1.21146 1.20240 1.21079 0.87002 0.94333 0.96086 1.22906 1.00060 1.00893 0.94518 1.23388 1.03275 1.02549 0.93433 1.22921 0.93386 1.00552 1.04657 0.92685 0.91123 0.91980 0.84231 0.91002 0.91345 0.89690 0.92221 0.92444 0.93256 0.92994 0.93036 0.93036 0.95082 0.93939 0.92652 0.89549 0.91257 0.87584 0.87862 0.89244 0.89104 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.56 60.07 0.57 0.56 16 2 N -0.67 -9.82 5.92 -115.24 -0.68 -10.50 16 3 C 0.07 0.99 2.42 -68.86 -0.17 0.82 16 4 H 0.10 1.36 4.04 -51.93 -0.21 1.15 16 5 C -0.10 -1.36 3.62 -26.73 -0.10 -1.46 16 6 C -0.09 -0.97 2.60 -90.62 -0.24 -1.20 16 7 C -0.15 -1.47 7.87 37.16 0.29 -1.18 16 8 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 9 C 0.48 9.71 6.64 -10.98 -0.07 9.63 16 10 O -0.54 -13.22 13.49 5.56 0.07 -13.14 16 11 N -0.59 -12.25 2.46 -175.05 -0.43 -12.68 16 12 C 0.24 6.34 5.19 -5.19 -0.03 6.31 16 13 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 17 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.14 2.24 5.53 -4.04 -0.02 2.22 16 22 C -0.16 -2.27 5.93 -90.62 -0.54 -2.80 16 23 C -0.19 -2.05 7.61 -26.69 -0.20 -2.26 16 24 C -0.18 -1.97 10.25 -26.69 -0.27 -2.24 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.33 5.26 -51.93 -0.27 1.05 16 27 H 0.06 0.87 5.84 -51.93 -0.30 0.57 16 28 H 0.34 5.20 8.81 -39.29 -0.35 4.86 16 29 H 0.07 0.95 6.30 -51.93 -0.33 0.62 16 30 H 0.07 1.02 6.40 -51.93 -0.33 0.69 16 31 H 0.08 1.02 6.94 -51.93 -0.36 0.66 16 32 H 0.06 0.54 5.79 -51.93 -0.30 0.24 16 33 H 0.06 0.58 6.47 -51.93 -0.34 0.24 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 39 H 0.04 1.26 7.36 -51.93 -0.38 0.88 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.09 1.47 8.06 -51.93 -0.42 1.05 16 42 H 0.07 0.96 5.40 -51.93 -0.28 0.68 16 43 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.10 1.03 5.10 -51.93 -0.26 0.77 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -30.98 356.52 -8.70 -39.68 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.90 Total: 6.49 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.85 Total: -6.17 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.38 Total: -48.97 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.98 -8.70 -39.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578751513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.887 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds