Wall clock time and date at job start Tue Mar 31 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99710 * 2 1 4 4 H 1.08998 * 109.47272 * 187.40947 * 3 2 1 5 5 C 1.53002 * 109.47203 * 307.40845 * 3 2 1 6 6 C 1.53001 * 109.46909 * 301.58017 * 5 3 2 7 7 C 1.52998 * 109.47370 * 292.39538 * 6 5 3 8 8 C 1.53004 * 109.46946 * 172.39753 * 6 5 3 9 9 C 1.50702 * 109.47074 * 67.40751 * 3 2 1 10 10 O 1.21277 * 120.00115 * 315.15378 * 9 3 2 11 11 N 1.34779 * 119.99600 * 135.15511 * 9 3 2 12 12 C 1.46496 * 119.99534 * 185.40180 * 11 9 3 13 13 C 1.50707 * 109.47041 * 90.00459 * 12 11 9 14 14 H 1.07997 * 119.99488 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00070 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47384 * 59.99999 * 17 15 13 19 19 H 1.48500 * 109.46952 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47243 * 299.99700 * 17 15 13 21 21 C 1.46502 * 120.00172 * 5.40740 * 11 9 3 22 22 C 1.53000 * 109.47108 * 88.00439 * 21 11 9 23 23 C 1.53001 * 117.49667 * 241.71206 * 22 21 11 24 24 C 1.52997 * 117.49423 * 173.05372 * 22 21 11 25 25 H 1.09003 * 109.47099 * 179.78021 * 1 2 3 26 26 H 1.08999 * 109.47290 * 299.78113 * 1 2 3 27 27 H 1.09004 * 109.46957 * 59.78020 * 1 2 3 28 28 H 1.00897 * 110.99665 * 123.95253 * 2 1 3 29 29 H 1.09002 * 109.47134 * 181.57995 * 5 3 2 30 30 H 1.08997 * 109.47271 * 61.57923 * 5 3 2 31 31 H 1.09002 * 109.47159 * 52.40080 * 6 5 3 32 32 H 1.08994 * 109.47190 * 300.00648 * 7 6 5 33 33 H 1.09006 * 109.47021 * 60.00307 * 7 6 5 34 34 H 1.08995 * 109.47506 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47184 * 175.19909 * 8 6 5 36 36 H 1.09004 * 109.47004 * 295.19601 * 8 6 5 37 37 H 1.08996 * 109.47299 * 55.19718 * 8 6 5 38 38 H 1.09006 * 109.47177 * 210.00089 * 12 11 9 39 39 H 1.09003 * 109.47815 * 329.99991 * 12 11 9 40 40 H 0.97000 * 120.00253 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46674 * 208.00667 * 21 11 9 42 42 H 1.08995 * 109.46642 * 328.00070 * 21 11 9 43 43 H 1.08994 * 115.55365 * 27.38185 * 22 21 11 44 44 H 1.09001 * 117.50006 * 0.02562 * 23 22 21 45 45 H 1.09002 * 117.50132 * 145.01933 * 23 22 21 46 46 H 1.09000 * 117.49625 * 214.97622 * 24 22 21 47 47 H 1.08996 * 117.50408 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 3.0770 1.3456 -0.1325 5 6 1.3600 2.1616 -1.1458 6 6 1.6616 1.4651 -2.4743 7 6 3.1590 1.5622 -2.7728 8 6 0.8729 2.1434 -3.5963 9 6 1.6658 2.0360 1.3118 10 8 0.5542 1.9272 1.7843 11 7 2.6065 2.7514 1.9599 12 6 2.3242 3.2979 3.2894 13 6 2.7234 2.2942 4.3403 14 1 3.1448 1.3441 4.0470 15 6 2.5507 2.5889 5.6761 16 7 2.0380 3.7462 6.0332 17 14 3.0449 1.3445 6.9785 18 1 4.4963 1.0538 6.8601 19 1 2.7589 1.8985 8.3263 20 1 2.2717 0.0915 6.7848 21 6 3.9111 2.9824 1.3347 22 6 3.8474 4.2452 0.4732 23 6 4.1010 4.0900 -1.0276 24 6 5.1561 4.7508 -0.1370 25 1 -0.3633 -1.0277 -0.0039 26 1 -0.3634 0.5104 0.8919 27 1 -0.3633 0.5173 -0.8880 28 1 1.8305 -0.5261 0.7814 29 1 1.7714 3.1709 -1.1631 30 1 0.2812 2.2115 -0.9984 31 1 1.3713 0.4165 -2.4088 32 1 3.4492 2.6108 -2.8382 33 1 3.7209 1.0790 -1.9734 34 1 3.3737 1.0664 -3.7194 35 1 1.1518 1.7035 -4.5538 36 1 -0.1945 2.0003 -3.4279 37 1 1.0994 3.2095 -3.6065 38 1 2.8911 4.2180 3.4319 39 1 1.2587 3.5106 3.3763 40 1 1.9168 3.9537 6.9730 41 1 4.6678 3.1085 2.1090 42 1 4.1704 2.1284 0.7090 43 1 3.1165 4.9910 0.7856 44 1 4.3128 3.0882 -1.4013 45 1 3.5372 4.7340 -1.7026 46 1 5.2861 5.8293 -0.2264 47 1 6.0626 4.1840 0.0756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578751513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:14 Heat of formation + Delta-G solvation = -34.354025 kcal Electronic energy + Delta-G solvation = -24249.101024 eV Core-core repulsion = 21045.777206 eV Total energy + Delta-G solvation = -3203.323817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42075 -38.52716 -38.14766 -36.13761 -35.18446 -34.62789 -30.85307 -29.42266 -28.01538 -27.64886 -26.81108 -25.31018 -23.29202 -23.09119 -21.88545 -20.49176 -19.79908 -18.63303 -18.35672 -17.82124 -16.91340 -16.34581 -16.10652 -15.89448 -15.55013 -15.35818 -14.93211 -14.64222 -14.37654 -14.13258 -14.00576 -13.82540 -13.32549 -13.20255 -12.98816 -12.94500 -12.79371 -12.62430 -12.56184 -12.31292 -12.28488 -12.22645 -12.05953 -11.76339 -11.72579 -11.42736 -11.29254 -11.16953 -11.04151 -10.70466 -10.67008 -9.46252 -9.18820 -8.25204 -6.41148 1.34287 1.38336 1.45769 1.74643 2.24603 2.41679 2.97151 3.04095 3.25131 3.62560 3.79657 3.94714 4.01395 4.07555 4.12966 4.25314 4.28908 4.46893 4.51553 4.61240 4.71382 4.79481 4.82289 4.85719 4.90411 4.93369 4.98669 5.01290 5.06157 5.09448 5.16577 5.18906 5.21789 5.26622 5.33470 5.35126 5.43554 5.53945 5.62400 5.70809 5.82449 5.86625 6.02604 6.21414 6.66202 6.77340 7.24897 7.44954 8.81700 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017879 B = 0.005543 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.740924 B = 5050.078128 C = 6028.265025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.651 5.651 3 C 0.082 3.918 4 H 0.119 0.881 5 C -0.097 4.097 6 C -0.081 4.081 7 C -0.152 4.152 8 C -0.146 4.146 9 C 0.468 3.532 10 O -0.592 6.592 11 N -0.595 5.595 12 C 0.262 3.738 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.277 1.277 21 C 0.139 3.861 22 C -0.193 4.193 23 C -0.167 4.167 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.339 0.661 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.016 0.984 39 H -0.007 1.007 40 H 0.267 0.733 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -3.176 -19.752 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.280 5.280 3 C -0.032 4.032 4 H 0.136 0.864 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.209 4.209 8 C -0.203 4.203 9 C 0.256 3.744 10 O -0.474 6.474 11 N -0.325 5.325 12 C 0.140 3.860 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.204 1.204 20 H -0.202 1.202 21 C 0.017 3.983 22 C -0.213 4.213 23 C -0.203 4.203 24 C -0.199 4.199 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.449 -3.185 -20.038 21.009 hybrid contribution -0.531 0.205 2.505 2.569 sum 4.918 -2.980 -17.533 18.452 Atomic orbital electron populations 1.22550 0.87928 1.02054 1.01910 1.61028 1.08862 1.10261 1.47814 1.21919 1.02208 0.89161 0.89865 0.86385 1.21646 0.99683 0.98766 0.93389 1.20959 0.96787 1.00196 0.92022 1.22066 0.94620 1.02504 1.01702 1.21841 0.99424 1.00712 0.98333 1.22789 0.84146 0.79020 0.88428 1.90548 1.23698 1.62324 1.70782 1.48338 1.14881 1.51421 1.17899 1.18677 0.94633 0.93462 0.79195 1.21654 1.42249 1.02467 0.91836 0.92730 1.25879 0.94796 0.97498 1.00907 1.70057 1.45138 1.23791 1.17835 0.85457 0.79327 0.78481 0.77493 1.18312 1.20402 1.20241 1.21283 0.84142 0.96691 0.96194 1.22615 1.02170 0.99708 0.96773 1.23495 1.02142 1.03549 0.91151 1.23045 0.92667 1.01431 1.02805 0.90733 0.95032 0.90899 0.84445 0.90723 0.93378 0.90466 0.91300 0.92642 0.91815 0.91406 0.93619 0.92637 0.96561 0.98892 0.92410 0.90878 0.88405 0.90449 0.86334 0.88125 0.88249 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.15 9.56 127.69 1.22 1.37 16 2 N -0.65 -18.54 5.92 -518.51 -3.07 -21.61 16 3 C 0.08 2.40 2.42 44.17 0.11 2.51 16 4 H 0.12 2.99 4.04 -2.39 -0.01 2.98 16 5 C -0.10 -2.46 3.62 30.60 0.11 -2.35 16 6 C -0.08 -1.55 2.60 -10.79 -0.03 -1.58 16 7 C -0.15 -2.33 7.87 71.98 0.57 -1.76 16 8 C -0.15 -2.42 9.19 71.98 0.66 -1.76 16 9 C 0.47 19.65 6.64 87.66 0.58 20.23 16 10 O -0.59 -30.65 13.49 -3.02 -0.04 -30.69 16 11 N -0.60 -25.68 2.46 -826.14 -2.03 -27.71 16 12 C 0.26 14.49 5.19 85.64 0.44 14.94 16 13 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 15 C 0.01 0.48 5.46 84.65 0.46 0.94 16 16 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 17 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 C 0.14 4.45 5.53 86.38 0.48 4.93 16 22 C -0.19 -5.21 5.93 -10.79 -0.06 -5.27 16 23 C -0.17 -3.10 7.61 30.62 0.23 -2.87 16 24 C -0.16 -3.18 10.25 30.62 0.31 -2.86 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.03 1.23 5.26 -2.39 -0.01 1.22 16 27 H 0.07 2.02 5.84 -2.38 -0.01 2.00 16 28 H 0.34 10.05 8.81 -89.70 -0.79 9.26 16 29 H 0.07 1.86 6.30 -2.39 -0.02 1.85 16 30 H 0.05 1.43 6.40 -2.39 -0.02 1.42 16 31 H 0.08 1.64 6.94 -2.39 -0.02 1.62 16 32 H 0.07 0.93 5.79 -2.39 -0.01 0.92 16 33 H 0.05 0.88 6.47 -2.38 -0.02 0.87 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.02 0.93 8.07 -2.38 -0.02 0.91 16 39 H -0.01 -0.45 7.36 -2.39 -0.02 -0.47 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.07 2.50 8.06 -2.39 -0.02 2.48 16 42 H 0.10 2.51 5.40 -2.39 -0.01 2.49 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.12 1.86 5.10 -2.39 -0.01 1.84 16 45 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.53 356.52 2.67 -68.86 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.17 Total: 25.66 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.33 Total: -4.89 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -4.82 Total: -106.03 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.04 Total: -30.69 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.53 2.67 -68.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578751513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.506 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds