Wall clock time and date at job start Tue Mar 31 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46731 * 2 1 4 4 C 1.53005 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46962 * 180.02562 * 4 3 2 6 6 O 1.21275 * 119.99768 * 0.02562 * 5 4 3 7 7 N 1.35161 * 119.99870 * 180.02562 * 5 4 3 8 8 C 1.45751 * 120.27280 * 359.97438 * 7 5 4 9 9 C 1.52556 * 113.84370 * 75.61964 * 8 7 5 10 10 C 1.52429 * 112.60899 * 22.52678 * 9 8 7 11 11 C 1.52547 * 111.03993 * 80.38964 * 10 9 8 12 12 C 1.51663 * 111.90717 * 301.82031 * 11 10 9 13 13 C 1.52516 * 112.20595 * 296.06509 * 12 11 10 14 14 H 1.10994 * 107.52584 * 225.41634 * 13 12 11 15 15 N 1.45891 * 112.49244 * 343.05257 * 13 12 11 16 16 C 1.36933 * 120.00012 * 209.75600 * 15 13 12 17 17 H 1.07997 * 120.00161 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99922 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00177 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00123 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47102 * 90.00086 * 20 18 16 22 22 H 1.48501 * 109.47334 * 210.00196 * 20 18 16 23 23 H 1.48502 * 109.47247 * 330.00438 * 20 18 16 24 24 C 1.47094 * 119.76405 * 183.57324 * 7 5 4 25 25 H 1.09001 * 109.47348 * 59.99836 * 1 2 3 26 26 H 1.09002 * 109.46844 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47263 * 299.99633 * 1 2 3 28 28 H 1.08993 * 109.47222 * 240.00853 * 2 1 3 29 29 H 1.09001 * 109.47348 * 120.00164 * 2 1 3 30 30 H 1.09002 * 109.47346 * 60.00519 * 3 2 1 31 31 H 1.08996 * 109.47644 * 300.00531 * 3 2 1 32 32 H 1.08995 * 109.47350 * 60.00275 * 4 3 2 33 33 H 1.09001 * 109.47256 * 300.00189 * 4 3 2 34 34 H 1.10031 * 108.01786 * 315.06649 * 8 7 5 35 35 H 1.09260 * 109.53419 * 199.11289 * 8 7 5 36 36 H 1.09806 * 109.21062 * 144.18660 * 9 8 7 37 37 H 1.09814 * 109.16199 * 261.16591 * 9 8 7 38 38 H 1.10610 * 108.01283 * 198.26492 * 10 9 8 39 39 H 1.08055 * 111.89515 * 315.31615 * 10 9 8 40 40 H 1.09120 * 109.99810 * 178.63780 * 11 10 9 41 41 H 1.10017 * 108.47036 * 61.65578 * 11 10 9 42 42 H 1.10184 * 108.43708 * 176.15259 * 12 11 10 43 43 H 1.09006 * 110.22234 * 59.53295 * 12 11 10 44 44 H 0.96998 * 120.00104 * 29.76680 * 15 13 12 45 45 H 0.97002 * 120.00384 * 180.02562 * 19 18 16 46 46 H 1.09558 * 109.03435 * 14.47035 * 24 7 5 47 47 H 1.09566 * 109.03708 * 132.41096 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2840 3.7852 0.0013 7 7 5.4010 3.1105 -0.0009 8 6 6.3535 2.0072 -0.0020 9 6 6.4931 1.3144 -1.3540 10 6 6.0659 2.2043 -2.5154 11 6 7.1741 3.1825 -2.8923 12 6 7.5741 4.0621 -1.7233 13 6 6.4345 4.9669 -1.2663 14 1 6.8538 5.9839 -1.1187 15 7 5.3772 5.0805 -2.2651 16 6 4.6309 6.2258 -2.3449 17 1 4.8253 7.0452 -1.6687 18 6 3.6253 6.3341 -3.2955 19 7 3.3887 5.3357 -4.1199 20 14 2.6077 7.8968 -3.4049 21 1 3.2569 8.8454 -4.3451 22 1 1.2456 7.5672 -3.8962 23 1 2.5116 8.5201 -2.0605 24 6 5.8861 4.4968 0.0793 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9565 -0.8899 32 1 3.9329 0.9290 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 6.0157 1.2653 0.7370 35 1 7.3289 2.3664 0.3345 36 1 7.5377 1.0073 -1.4964 37 1 5.8821 0.4019 -1.3562 38 1 5.8773 1.5561 -3.3916 39 1 5.1396 2.7206 -2.3079 40 1 6.8599 3.7940 -3.7397 41 1 8.0534 2.6055 -3.2152 42 1 8.4202 4.6945 -2.0366 43 1 7.9282 3.4491 -0.8944 44 1 5.2027 4.3446 -2.8725 45 1 2.6862 5.4115 -4.7845 46 1 5.0605 5.1469 0.3891 47 1 6.6727 4.5568 0.8396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692313318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:07 Heat of formation + Delta-G solvation = -40.709263 kcal Electronic energy + Delta-G solvation = -24619.218532 eV Core-core repulsion = 21415.619131 eV Total energy + Delta-G solvation = -3203.599401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.83302 -37.39603 -35.13110 -34.60922 -33.43228 -32.07870 -30.23716 -29.18109 -27.53021 -26.45725 -24.64743 -23.51183 -22.29054 -20.84923 -20.47605 -19.22897 -17.91021 -17.26394 -16.29487 -15.79721 -15.53721 -15.04837 -14.67428 -14.41331 -13.97598 -13.66030 -13.51536 -13.39216 -13.09900 -12.89796 -12.48558 -12.11588 -12.04978 -11.67739 -11.51755 -11.40818 -11.14336 -10.93815 -10.92122 -10.84084 -10.77418 -10.68086 -10.57950 -10.36495 -10.20132 -10.05656 -9.74168 -9.53587 -9.45653 -8.99002 -8.84600 -8.01204 -6.72188 -5.60831 -2.86259 3.34613 3.53992 3.59705 3.61054 3.62062 4.73745 4.83231 4.94174 5.08841 5.09028 5.24365 5.26996 5.36561 5.40420 5.51415 5.59900 5.63392 5.66375 5.68874 5.80492 5.85820 5.87958 5.89234 5.97354 6.01419 6.03997 6.09349 6.16950 6.24659 6.28376 6.34883 6.45266 6.47812 6.49718 6.62271 6.63401 6.72760 6.92411 7.00460 7.06477 7.28235 7.85736 8.06447 8.59317 8.95444 9.70971 10.30127 10.63014 11.62575 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.007572 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.693967 B = 3696.704627 C = 5174.952394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.138 4.138 5 C 0.509 3.491 6 O -0.512 6.512 7 N -0.599 5.599 8 C 0.116 3.884 9 C -0.131 4.131 10 C -0.120 4.120 11 C -0.105 4.105 12 C -0.118 4.118 13 C 0.164 3.836 14 H 0.045 0.955 15 N -0.708 5.708 16 C -0.226 4.226 17 H 0.066 0.934 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.903 3.097 21 H -0.293 1.293 22 H -0.294 1.294 23 H -0.283 1.283 24 C 0.092 3.908 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.388 0.612 45 H 0.251 0.749 46 H 0.086 0.914 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -12.866 8.899 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.144 4.144 4 C -0.178 4.178 5 C 0.297 3.703 6 O -0.385 6.385 7 N -0.333 5.333 8 C -0.008 4.008 9 C -0.170 4.170 10 C -0.158 4.158 11 C -0.143 4.143 12 C -0.156 4.156 13 C 0.051 3.949 14 H 0.063 0.937 15 N -0.351 5.351 16 C -0.358 4.358 17 H 0.084 0.916 18 C -0.206 4.206 19 N -0.582 5.582 20 Si 0.735 3.265 21 H -0.221 1.221 22 H -0.220 1.220 23 H -0.209 1.209 24 C -0.033 4.033 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.225 0.775 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.315 -12.180 8.881 15.983 hybrid contribution -0.507 0.488 -0.319 0.773 sum 4.808 -11.692 8.562 15.268 Atomic orbital electron populations 1.21759 0.95974 1.01083 1.02128 1.21529 0.95921 0.97043 1.01505 1.21375 0.93260 0.95986 1.03778 1.21728 0.97650 0.95060 1.03327 1.20549 0.82079 0.91164 0.76533 1.90762 1.54291 1.46185 1.47287 1.47647 1.05108 1.06502 1.74037 1.21283 0.93715 0.89320 0.96497 1.21947 1.01449 0.98267 0.95315 1.21425 1.00528 0.97471 0.96327 1.21106 0.97193 0.97259 0.98753 1.21646 0.97973 0.97990 0.98030 1.20438 0.89255 0.96041 0.89125 0.93701 1.42411 1.37367 1.18101 1.37181 1.19170 1.10541 0.93154 1.12903 0.91614 1.24614 0.99411 0.97595 0.98938 1.69643 1.34729 1.31044 1.22823 0.86239 0.79856 0.83066 0.77329 1.22119 1.22001 1.20922 1.22691 0.99367 0.82234 0.98993 0.92500 0.93127 0.92823 0.92129 0.92452 0.91619 0.90787 0.89304 0.90098 0.92767 0.90641 0.91737 0.92540 0.93632 0.89198 0.90908 0.94056 0.93480 0.92478 0.77480 0.93877 0.89587 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.11 -1.57 4.50 -26.73 -0.12 -1.70 16 4 C -0.14 -1.98 4.39 -27.88 -0.12 -2.10 16 5 C 0.51 9.62 6.57 -10.81 -0.07 9.55 16 6 O -0.51 -12.39 15.36 5.56 0.09 -12.30 16 7 N -0.60 -9.96 1.72 -173.08 -0.30 -10.25 16 8 C 0.12 1.43 4.48 -4.67 -0.02 1.41 16 9 C -0.13 -1.61 4.78 -27.25 -0.13 -1.74 16 10 C -0.12 -1.96 4.73 -27.26 -0.13 -2.09 16 11 C -0.11 -1.75 4.74 -27.64 -0.13 -1.89 16 12 C -0.12 -1.90 5.03 -27.66 -0.14 -2.04 16 13 C 0.16 3.25 2.63 -68.65 -0.18 3.07 16 14 H 0.05 0.92 8.11 -50.78 -0.41 0.51 16 15 N -0.71 -17.78 4.56 -53.47 -0.24 -18.02 16 16 C -0.23 -6.49 9.87 -15.06 -0.15 -6.64 16 17 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 20 Si 0.90 23.75 29.55 -169.99 -5.02 18.73 16 21 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 22 H -0.29 -7.83 7.11 56.52 0.40 -7.42 16 23 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 24 C 0.09 1.69 5.38 -3.86 -0.02 1.67 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 32 H 0.09 1.21 6.53 -51.93 -0.34 0.87 16 33 H 0.08 0.94 7.48 -51.93 -0.39 0.55 16 34 H 0.05 0.56 7.12 -51.34 -0.37 0.19 16 35 H 0.08 0.82 6.35 -51.78 -0.33 0.50 16 36 H 0.06 0.68 8.10 -51.47 -0.42 0.26 16 37 H 0.06 0.62 7.28 -51.47 -0.37 0.24 16 38 H 0.04 0.72 8.27 -51.01 -0.42 0.30 16 39 H 0.09 1.86 4.29 -52.46 -0.22 1.64 16 40 H 0.07 1.46 7.25 -51.86 -0.38 1.08 16 41 H 0.04 0.58 8.23 -51.35 -0.42 0.16 16 42 H 0.05 0.72 8.24 -51.25 -0.42 0.30 16 43 H 0.06 0.77 4.93 -51.93 -0.26 0.52 16 44 H 0.39 10.19 3.93 -40.82 -0.16 10.03 16 45 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.09 1.89 7.08 -51.61 -0.37 1.52 16 47 H 0.05 0.72 8.14 -51.61 -0.42 0.30 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -33.35 348.36 -8.80 -42.14 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.19 Total: 8.50 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.10 Total: -5.75 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.18 Total: -56.56 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.35 -8.80 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692313318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.435 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds