Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47280 * 2 1 4 4 C 1.52994 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47146 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00127 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00098 * 180.02562 * 5 4 3 8 8 C 1.47135 * 120.18785 * 359.97438 * 7 5 4 9 9 C 1.53618 * 107.51720 * 252.15772 * 8 7 5 10 10 C 1.53492 * 108.46063 * 290.23835 * 9 8 7 11 11 C 1.52458 * 109.13424 * 114.21828 * 10 9 8 12 12 C 1.53111 * 109.68324 * 316.06372 * 11 10 9 13 13 C 1.53432 * 109.32361 * 282.97513 * 12 11 10 14 14 H 1.09010 * 109.62859 * 312.63534 * 13 12 11 15 15 N 1.46498 * 109.63529 * 192.04787 * 13 12 11 16 16 C 1.36939 * 119.99987 * 155.98560 * 15 13 12 17 17 H 1.07997 * 120.00420 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99584 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99706 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00189 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47292 * 90.00398 * 20 18 16 22 22 H 1.48503 * 109.47008 * 209.99537 * 20 18 16 23 23 H 1.48497 * 109.47468 * 329.99771 * 20 18 16 24 24 C 1.46057 * 120.18923 * 180.02562 * 7 5 4 25 25 H 1.08998 * 109.46979 * 60.00235 * 1 2 3 26 26 H 1.08996 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46730 * 300.00404 * 1 2 3 28 28 H 1.09003 * 109.47234 * 239.99744 * 2 1 3 29 29 H 1.08998 * 109.46979 * 119.99765 * 2 1 3 30 30 H 1.08993 * 109.47191 * 59.99649 * 3 2 1 31 31 H 1.09000 * 109.46529 * 300.00153 * 3 2 1 32 32 H 1.09003 * 109.47320 * 59.99771 * 4 3 2 33 33 H 1.08998 * 109.47023 * 299.99713 * 4 3 2 34 34 H 1.09008 * 109.84822 * 11.65918 * 8 7 5 35 35 H 1.08993 * 109.85202 * 132.58235 * 8 7 5 36 36 H 1.09001 * 109.64005 * 49.92988 * 9 8 7 37 37 H 1.09003 * 109.63853 * 170.33626 * 9 8 7 38 38 H 1.08993 * 109.52408 * 234.11909 * 10 9 8 39 39 H 1.08996 * 109.52237 * 354.31832 * 10 9 8 40 40 H 1.08999 * 109.43810 * 76.12981 * 11 10 9 41 41 H 1.08997 * 109.43385 * 196.04834 * 11 10 9 42 42 H 1.09006 * 109.49867 * 163.01732 * 12 11 10 43 43 H 1.09005 * 109.49906 * 42.92557 * 12 11 10 44 44 H 0.97000 * 120.00150 * 335.98409 * 15 13 12 45 45 H 0.96999 * 119.99993 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.36241 * 306.71531 * 24 7 5 47 47 H 1.08997 * 109.25581 * 187.04270 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2843 3.7851 -0.0017 7 7 5.3975 3.1095 -0.0024 8 6 6.3573 1.9943 -0.0025 9 6 7.0002 1.9375 1.3915 10 6 7.9109 3.1619 1.5571 11 6 7.3430 4.0633 2.6477 12 6 5.8281 4.1965 2.4697 13 6 5.5355 5.1721 1.3222 14 1 6.1413 6.0704 1.4419 15 7 4.1144 5.5277 1.3287 16 6 3.7002 6.7036 0.7622 17 1 4.4212 7.3687 0.3103 18 6 2.3536 7.0402 0.7679 19 7 1.9555 8.1707 0.2239 20 14 1.1065 5.8896 1.5489 21 1 0.9439 6.2360 2.9838 22 1 -0.1990 6.0299 0.8551 23 1 1.5828 4.4882 1.4289 24 6 5.8889 4.4849 -0.0025 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 5.8374 1.0586 -0.2088 35 1 7.1239 2.1658 -0.7580 36 1 6.2221 1.9538 2.1547 37 1 7.5878 1.0244 1.4870 38 1 8.9121 2.8358 1.8385 39 1 7.9565 3.7117 0.6170 40 1 7.5567 3.6295 3.6245 41 1 7.8035 5.0488 2.5798 42 1 5.3855 4.5752 3.3911 43 1 5.4021 3.2209 2.2352 44 1 3.4667 4.9302 1.7343 45 1 1.0145 8.4058 0.2275 46 1 5.4308 5.0324 -0.8263 47 1 6.9714 4.4799 -0.1297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692313319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -9.533548 kcal Electronic energy + Delta-G solvation = -24696.902437 eV Core-core repulsion = 21494.654916 eV Total energy + Delta-G solvation = -3202.247521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18224 -37.51048 -35.25349 -34.74446 -33.62183 -31.84676 -30.40658 -29.81958 -27.13823 -26.66899 -24.48844 -23.24902 -22.56113 -21.14767 -20.28390 -19.90730 -17.92484 -17.29923 -16.55129 -15.91445 -15.64794 -15.19585 -15.13465 -14.26367 -13.96632 -13.76088 -13.59739 -13.45483 -13.30715 -13.01991 -12.42640 -12.25853 -12.05952 -11.89643 -11.80879 -11.69119 -11.22701 -11.16678 -11.02539 -10.95697 -10.80011 -10.63405 -10.60941 -10.49398 -10.34448 -10.08359 -9.70836 -9.67272 -9.29581 -9.03596 -8.57769 -8.07176 -6.79931 -5.48101 -2.77692 3.30652 3.49141 3.63098 3.70909 3.84253 4.71162 4.81418 4.90351 4.94626 4.97980 5.00655 5.09426 5.25471 5.29378 5.35960 5.40445 5.44390 5.50787 5.54058 5.65950 5.69497 5.77997 5.80235 5.82842 5.87710 5.93374 5.95361 6.03821 6.14725 6.16117 6.18233 6.20321 6.32143 6.35956 6.38688 6.53868 6.56587 6.65411 6.80431 6.91744 7.22652 7.97989 8.25628 8.70394 8.95529 9.55113 10.29536 10.49085 11.70837 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010292 B = 0.009669 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.987172 B = 2895.008845 C = 5045.587485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.108 4.108 4 C -0.137 4.137 5 C 0.484 3.516 6 O -0.468 6.468 7 N -0.611 5.611 8 C 0.108 3.892 9 C -0.147 4.147 10 C -0.128 4.128 11 C -0.114 4.114 12 C -0.138 4.138 13 C 0.171 3.829 14 H 0.058 0.942 15 N -0.725 5.725 16 C -0.220 4.220 17 H 0.081 0.919 18 C 0.005 3.995 19 N -0.947 5.947 20 Si 0.879 3.121 21 H -0.299 1.299 22 H -0.302 1.302 23 H -0.248 1.248 24 C 0.091 3.909 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.365 0.635 45 H 0.253 0.747 46 H 0.069 0.931 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.971 -19.566 1.241 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.146 4.146 4 C -0.177 4.177 5 C 0.269 3.731 6 O -0.339 6.339 7 N -0.348 5.348 8 C -0.016 4.016 9 C -0.185 4.185 10 C -0.165 4.165 11 C -0.152 4.152 12 C -0.176 4.176 13 C 0.060 3.940 14 H 0.076 0.924 15 N -0.368 5.368 16 C -0.351 4.351 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.597 5.597 20 Si 0.710 3.290 21 H -0.228 1.228 22 H -0.229 1.229 23 H -0.173 1.173 24 C -0.034 4.034 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.200 0.800 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.484 -18.821 1.123 21.106 hybrid contribution -0.823 -0.792 0.401 1.210 sum 8.662 -19.613 1.524 21.494 Atomic orbital electron populations 1.21766 0.95925 1.01127 1.02235 1.21532 0.95990 0.96974 1.01452 1.21406 0.93244 0.95977 1.03969 1.21704 0.97667 0.95422 1.02928 1.20680 0.82529 0.91373 0.78484 1.91015 1.53673 1.44892 1.44304 1.47999 1.05259 1.06504 1.74995 1.21904 0.92684 0.90246 0.96752 1.22480 0.99756 0.98026 0.98248 1.21891 0.97905 0.96404 1.00329 1.21449 0.96296 0.99571 0.97847 1.22241 0.94975 1.01026 0.99330 1.20723 0.87715 0.94368 0.91225 0.92406 1.42719 1.01464 1.22650 1.69984 1.18934 0.92695 0.94303 1.29126 0.90106 1.24514 0.96646 0.96794 1.01020 1.69732 1.14862 1.23869 1.51212 0.86565 0.81195 0.83549 0.77659 1.22758 1.22908 1.17289 1.22631 0.97200 0.81467 1.02056 0.92624 0.93054 0.92651 0.92312 0.92319 0.91155 0.91190 0.89988 0.90056 0.90448 0.91332 0.90279 0.91874 0.92710 0.90748 0.92803 0.91969 0.92486 0.90960 0.79982 0.93720 0.91221 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.11 -1.53 4.50 -26.73 -0.12 -1.65 16 4 C -0.14 -1.76 4.05 -27.89 -0.11 -1.87 16 5 C 0.48 8.37 6.85 -10.98 -0.08 8.30 16 6 O -0.47 -10.73 10.27 5.56 0.06 -10.67 16 7 N -0.61 -9.12 1.72 -172.93 -0.30 -9.42 16 8 C 0.11 1.11 5.83 -3.37 -0.02 1.09 16 9 C -0.15 -1.42 5.60 -26.16 -0.15 -1.56 16 10 C -0.13 -1.32 5.48 -26.75 -0.15 -1.47 16 11 C -0.11 -1.39 5.67 -26.95 -0.15 -1.54 16 12 C -0.14 -2.18 4.92 -26.45 -0.13 -2.31 16 13 C 0.17 3.32 2.68 -67.52 -0.18 3.14 16 14 H 0.06 1.17 7.84 -51.92 -0.41 0.76 16 15 N -0.73 -17.98 2.84 -53.03 -0.15 -18.13 16 16 C -0.22 -6.56 10.28 -15.06 -0.15 -6.71 16 17 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 18 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.95 -31.83 13.97 55.49 0.78 -31.06 16 20 Si 0.88 24.38 27.17 -169.99 -4.62 19.76 16 21 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 22 H -0.30 -8.61 7.11 56.52 0.40 -8.21 16 23 H -0.25 -6.54 5.23 56.52 0.30 -6.24 16 24 C 0.09 1.57 4.93 -4.10 -0.02 1.55 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.08 0.88 7.59 -51.93 -0.39 0.48 16 33 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 34 H 0.08 0.66 5.98 -51.92 -0.31 0.35 16 35 H 0.07 0.64 7.97 -51.93 -0.41 0.22 16 36 H 0.08 0.88 5.45 -51.93 -0.28 0.60 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.81 4.49 -51.93 -0.23 0.58 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.77 7.85 -51.93 -0.41 0.37 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.12 3.68 -51.93 -0.19 0.93 16 44 H 0.37 9.30 4.38 -40.82 -0.18 9.12 16 45 H 0.25 8.20 8.31 -40.82 -0.34 7.86 16 46 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 47 H 0.07 0.96 5.05 -51.93 -0.26 0.70 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -35.31 339.75 -8.49 -43.79 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.23 Total: 6.36 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.15 Total: -5.76 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.33 Total: -58.60 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.06 Total: -10.67 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.62 Total: 19.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.31 -8.49 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692313319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.260 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds