Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47078 * 2 1 4 4 C 1.53001 * 109.46847 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47403 * 305.00238 * 4 3 2 6 6 C 1.52995 * 109.47008 * 65.00254 * 4 3 2 7 7 C 1.50708 * 109.46915 * 185.00100 * 4 3 2 8 8 O 1.21273 * 120.00112 * 0.02562 * 7 4 3 9 9 N 1.34774 * 119.99513 * 180.02562 * 7 4 3 10 10 C 1.46507 * 119.99614 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46770 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.46900 * 180.02562 * 12 11 10 14 14 C 1.36933 * 120.00087 * 269.99829 * 13 12 11 15 15 H 1.08001 * 119.99917 * 141.41670 * 14 13 12 16 16 C 1.38815 * 120.00233 * 321.42294 * 14 13 12 17 17 N 1.31612 * 120.00492 * 157.77119 * 16 14 13 18 18 Si 1.86798 * 119.99550 * 337.77424 * 16 14 13 19 19 H 1.48500 * 109.47375 * 95.67881 * 18 16 14 20 20 H 1.48499 * 109.47210 * 215.68045 * 18 16 14 21 21 H 1.48499 * 109.47337 * 335.67817 * 18 16 14 22 22 C 1.46503 * 120.00022 * 89.99606 * 13 12 11 23 23 C 1.53003 * 117.49763 * 183.18763 * 22 13 12 24 24 C 1.53000 * 117.49560 * 114.53211 * 22 13 12 25 25 H 1.09004 * 109.47078 * 299.99949 * 1 2 3 26 26 H 1.09004 * 109.47379 * 59.99702 * 1 2 3 27 27 H 1.09003 * 109.47450 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46667 * 120.00108 * 2 1 3 29 29 H 1.08994 * 109.46981 * 240.00192 * 2 1 3 30 30 H 1.08992 * 109.47587 * 300.00169 * 3 2 1 31 31 H 1.09004 * 109.47124 * 60.00079 * 3 2 1 32 32 H 1.08998 * 109.47598 * 299.99807 * 6 4 3 33 33 H 1.09005 * 109.47076 * 59.99883 * 6 4 3 34 34 H 1.08998 * 109.47427 * 179.97438 * 6 4 3 35 35 H 0.96992 * 120.00707 * 0.02562 * 9 7 4 36 36 H 1.08996 * 109.47209 * 300.00162 * 10 9 7 37 37 H 1.08997 * 109.46872 * 60.00098 * 10 9 7 38 38 H 1.08996 * 109.47403 * 300.00213 * 11 10 9 39 39 H 1.08997 * 109.47082 * 60.00396 * 11 10 9 40 40 H 1.09005 * 109.47277 * 300.00094 * 12 11 10 41 41 H 1.08997 * 109.47131 * 60.00260 * 12 11 10 42 42 H 0.96995 * 120.00308 * 180.02562 * 17 16 14 43 43 H 1.09002 * 115.55264 * 328.86774 * 22 13 12 44 44 H 1.08995 * 117.49778 * 0.02562 * 23 22 13 45 45 H 1.08999 * 117.49556 * 145.02306 * 23 22 13 46 46 H 1.09003 * 117.50177 * 214.98283 * 24 22 13 47 47 H 1.09005 * 117.50108 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0805 0.8326 -1.3064 7 6 4.0723 2.8579 0.1245 8 8 3.2842 3.7762 0.2049 9 7 5.3974 3.1032 0.1460 10 6 5.8857 4.4792 0.2658 11 6 7.4157 4.4792 0.2666 12 6 7.9256 5.9162 0.3924 13 7 9.3906 5.9162 0.3925 14 6 10.0752 5.8129 1.5739 15 1 10.9784 5.2229 1.6248 16 6 9.6083 6.4663 2.7062 17 7 9.9681 6.0499 3.9017 18 14 8.4693 7.9366 2.5329 19 1 7.0593 7.4884 2.6607 20 1 8.7726 8.9260 3.5979 21 1 8.6703 8.5645 1.2022 22 6 10.1233 6.0268 -0.8713 23 6 11.6500 5.9459 -0.8123 24 6 10.9645 7.2855 -1.0924 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.7172 -0.1911 -1.3961 33 1 3.7175 1.4220 -2.1484 34 1 5.1704 0.8330 -1.3062 35 1 6.0277 2.3688 0.0813 36 1 5.5224 5.0683 -0.5762 37 1 5.5223 4.9139 1.1970 38 1 7.7786 3.8902 1.1089 39 1 7.7795 4.0444 -0.6644 40 1 7.5627 6.5056 -0.4497 41 1 7.5619 6.3506 1.3235 42 1 9.6415 6.5063 4.6929 43 1 9.6294 5.5924 -1.7406 44 1 12.1093 5.8100 0.1668 45 1 12.1606 5.4585 -1.6428 46 1 11.0244 7.6790 -2.1072 47 1 10.9725 8.0316 -0.2978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752248186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -17.128512 kcal Electronic energy + Delta-G solvation = -22341.638473 eV Core-core repulsion = 19139.061610 eV Total energy + Delta-G solvation = -3202.576863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89242 -37.43708 -36.26982 -35.29332 -33.68097 -32.40289 -31.65089 -29.71153 -26.84502 -25.65642 -24.18072 -23.28991 -21.70084 -21.22662 -21.13765 -19.77904 -19.56299 -16.94339 -16.60360 -15.92032 -15.81167 -15.53887 -15.31130 -14.97446 -14.32616 -14.07328 -13.79395 -13.69906 -13.24661 -12.79249 -12.64532 -12.48404 -12.46518 -12.16177 -12.13695 -12.06367 -11.45417 -11.19740 -11.14836 -11.09345 -10.99117 -10.84056 -10.73037 -10.66788 -10.37275 -10.00481 -9.78028 -9.61529 -9.47693 -9.42501 -8.89948 -8.54885 -6.77284 -6.06882 -3.49894 2.73255 3.27211 3.29731 3.44604 3.50617 4.46440 4.52561 4.57433 4.69011 4.71433 4.84521 4.93676 5.02082 5.08037 5.23203 5.28163 5.42889 5.47256 5.54008 5.57552 5.60333 5.65806 5.75581 5.76013 5.80459 5.84908 5.92730 5.95886 6.00694 6.07509 6.10211 6.18741 6.20808 6.32017 6.40096 6.47522 6.61997 6.71802 6.87124 6.91085 7.08934 7.62359 7.99681 8.32579 8.34280 8.92846 9.64044 10.04311 11.07817 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.003284 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.214664 B = 8524.949223 C = 9137.179526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.112 4.112 5 H 0.096 0.904 6 C -0.145 4.145 7 C 0.512 3.488 8 O -0.545 6.545 9 N -0.725 5.725 10 C 0.117 3.883 11 C -0.145 4.145 12 C 0.145 3.855 13 N -0.573 5.573 14 C -0.271 4.271 15 H 0.083 0.917 16 C 0.040 3.960 17 N -0.896 5.896 18 Si 0.872 3.128 19 H -0.283 1.283 20 H -0.300 1.300 21 H -0.266 1.266 22 C 0.120 3.880 23 C -0.188 4.188 24 C -0.225 4.225 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.264 0.736 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 -11.311 -10.397 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.202 4.202 7 C 0.298 3.702 8 O -0.423 6.423 9 N -0.376 5.376 10 C -0.007 4.007 11 C -0.185 4.185 12 C 0.019 3.981 13 N -0.292 5.292 14 C -0.400 4.400 15 H 0.100 0.900 16 C -0.161 4.161 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.211 1.211 20 H -0.228 1.228 21 H -0.191 1.191 22 C 0.012 3.988 23 C -0.226 4.226 24 C -0.265 4.265 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.437 -10.608 -10.118 19.225 hybrid contribution -0.143 0.608 0.121 0.636 sum -12.580 -10.000 -9.997 18.926 Atomic orbital electron populations 1.21764 0.95834 1.01402 1.01995 1.21603 0.95971 0.96735 1.02035 1.21426 0.92355 0.96523 1.03553 1.21350 0.97820 0.93691 1.00514 0.88558 1.21825 1.01238 1.01256 0.95914 1.20676 0.82361 0.91252 0.75932 1.90685 1.55406 1.46541 1.49649 1.46136 1.06925 1.10083 1.74475 1.21455 0.95365 0.82092 1.01778 1.22372 0.91554 1.01947 1.02635 1.21034 0.84235 0.93084 0.99785 1.43666 0.99841 1.83706 1.01973 1.18711 1.10567 1.25982 0.84694 0.89995 1.25492 0.97934 0.97427 0.95239 1.69849 1.46459 1.39912 0.97381 0.86998 0.80273 0.84759 0.77792 1.21121 1.22823 1.19052 1.21161 0.89668 0.98259 0.89760 1.23067 0.96419 1.00641 1.02516 1.23389 1.09726 0.92987 1.00446 0.92678 0.92737 0.92871 0.92009 0.91773 0.91357 0.91113 0.91285 0.92120 0.92074 0.76589 0.91945 0.91677 0.90493 0.92138 0.93828 0.92529 0.92575 0.89150 0.87900 0.90501 0.90830 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -0.95 5.69 -26.73 -0.15 -1.10 16 3 C -0.10 -1.00 4.03 -26.73 -0.11 -1.10 16 4 C -0.11 -1.11 2.73 -91.77 -0.25 -1.36 16 5 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.14 -1.13 8.84 37.15 0.33 -0.80 16 7 C 0.51 7.14 7.15 -10.98 -0.08 7.06 16 8 O -0.55 -9.83 15.92 5.56 0.09 -9.74 16 9 N -0.73 -9.65 5.45 -60.29 -0.33 -9.98 16 10 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 11 C -0.14 -2.48 5.65 -26.73 -0.15 -2.63 16 12 C 0.14 2.97 4.55 -4.04 -0.02 2.96 16 13 N -0.57 -13.04 2.39 -165.65 -0.40 -13.43 16 14 C -0.27 -7.24 8.95 -15.06 -0.13 -7.37 16 15 H 0.08 2.37 6.86 -52.49 -0.36 2.01 16 16 C 0.04 1.13 5.30 -17.43 -0.09 1.04 16 17 N -0.90 -26.66 13.97 55.49 0.78 -25.89 16 18 Si 0.87 21.93 25.08 -169.99 -4.26 17.67 16 19 H -0.28 -6.96 6.69 56.52 0.38 -6.58 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.12 2.36 6.56 -67.93 -0.45 1.91 16 23 C -0.19 -3.53 9.80 -26.69 -0.26 -3.79 16 24 C -0.22 -4.25 10.36 -26.69 -0.28 -4.53 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 32 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 7.56 -51.93 -0.39 0.04 16 35 H 0.40 4.31 7.89 -40.82 -0.32 3.99 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 41 H 0.06 1.30 3.40 -51.93 -0.18 1.12 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 44 H 0.10 2.18 6.44 -51.93 -0.33 1.85 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -31.23 370.67 -8.43 -39.67 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.60 Total: 4.74 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.30 Total: -8.62 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.05 Total: -49.30 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.26 Total: 17.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.23 -8.43 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752248186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.537 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds