Wall clock time and date at job start Tue Mar 31 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 C 1.52998 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47032 * 54.99789 * 4 3 2 6 6 C 1.52998 * 109.46899 * 294.99781 * 4 3 2 7 7 C 1.50703 * 109.46982 * 174.99805 * 4 3 2 8 8 O 1.21281 * 119.99975 * 359.97438 * 7 4 3 9 9 N 1.34774 * 120.00011 * 179.97438 * 7 4 3 10 10 C 1.46495 * 120.00562 * 180.02562 * 9 7 4 11 11 C 1.52998 * 109.47534 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47079 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47280 * 179.97438 * 12 11 10 14 14 C 1.36931 * 120.00382 * 270.00224 * 13 12 11 15 15 H 1.08001 * 120.00384 * 140.53416 * 14 13 12 16 16 C 1.38814 * 119.99808 * 320.53271 * 14 13 12 17 17 N 1.31611 * 119.99949 * 340.28159 * 16 14 13 18 18 Si 1.86803 * 119.99839 * 160.28326 * 16 14 13 19 19 H 1.48490 * 109.47303 * 90.00119 * 18 16 14 20 20 H 1.48506 * 109.46891 * 210.00111 * 18 16 14 21 21 H 1.48502 * 109.47063 * 329.99776 * 18 16 14 22 22 C 1.46507 * 119.99684 * 89.99707 * 13 12 11 23 23 C 1.53002 * 117.49583 * 183.28730 * 22 13 12 24 24 C 1.52993 * 60.00246 * 252.51443 * 23 22 13 25 25 H 1.09004 * 109.47144 * 299.99741 * 1 2 3 26 26 H 1.09002 * 109.47081 * 60.00159 * 1 2 3 27 27 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47081 * 119.99841 * 2 1 3 29 29 H 1.08997 * 109.47083 * 239.99572 * 2 1 3 30 30 H 1.09002 * 109.47046 * 299.99862 * 3 2 1 31 31 H 1.08997 * 109.47525 * 59.99842 * 3 2 1 32 32 H 1.08997 * 109.47285 * 299.99853 * 6 4 3 33 33 H 1.09001 * 109.47293 * 60.00510 * 6 4 3 34 34 H 1.09009 * 109.46875 * 180.02562 * 6 4 3 35 35 H 0.97000 * 119.99971 * 0.02562 * 9 7 4 36 36 H 1.09003 * 109.47133 * 300.00782 * 10 9 7 37 37 H 1.09007 * 109.46687 * 59.99654 * 10 9 7 38 38 H 1.08999 * 109.46957 * 299.99722 * 11 10 9 39 39 H 1.08997 * 109.47032 * 59.99957 * 11 10 9 40 40 H 1.09003 * 109.47281 * 300.00505 * 12 11 10 41 41 H 1.09007 * 109.46994 * 59.99656 * 12 11 10 42 42 H 0.97010 * 119.99984 * 175.01857 * 17 16 14 43 43 H 1.08995 * 115.55166 * 329.00291 * 22 13 12 44 44 H 1.09001 * 117.49989 * 0.02562 * 23 22 13 45 45 H 1.09003 * 117.49355 * 145.02570 * 23 22 13 46 46 H 1.09007 * 117.50404 * 252.51520 * 24 23 22 47 47 H 1.09000 * 117.51617 * 107.48170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.2841 3.7762 -0.2049 9 7 5.3973 3.1034 -0.1460 10 6 5.8857 4.4793 -0.2659 11 6 7.4157 4.4793 -0.2666 12 6 7.9256 5.9164 -0.3912 13 7 9.3905 5.9165 -0.3913 14 6 10.0754 6.0189 0.7900 15 1 10.9708 5.4359 0.9475 16 6 9.6187 6.8720 1.7853 17 7 8.7906 7.8498 1.4850 18 14 10.1798 6.6323 3.5509 19 1 11.4162 7.4195 3.7886 20 1 9.1137 7.0937 4.4760 21 1 10.4553 5.1931 3.7916 22 6 10.1229 5.8070 -1.6555 23 6 11.6495 5.7353 -1.5835 24 6 10.9666 7.0074 -2.0893 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.7176 1.4220 2.1484 33 1 3.7173 -0.1911 1.3960 34 1 5.1706 0.8331 1.3061 35 1 6.0277 2.3689 -0.0821 36 1 5.5222 4.9141 -1.1970 37 1 5.5223 5.0684 0.5763 38 1 7.7794 4.0445 0.6643 39 1 7.7785 3.8903 -1.1089 40 1 7.5617 6.3518 -1.3219 41 1 7.5626 6.5051 0.4514 42 1 8.4148 8.4008 2.1894 43 1 9.6279 5.2309 -2.4372 44 1 12.1090 5.7691 -0.5956 45 1 12.1592 5.1116 -2.3179 46 1 11.0268 7.2208 -3.1566 47 1 10.9764 7.8787 -1.4345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752248187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:11 Heat of formation + Delta-G solvation = -24.089550 kcal Electronic energy + Delta-G solvation = -22269.526155 eV Core-core repulsion = 19066.647439 eV Total energy + Delta-G solvation = -3202.878716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.81996 -37.14648 -36.21185 -35.15704 -33.56349 -32.35801 -31.33689 -29.31434 -26.80476 -25.60431 -24.19249 -23.00545 -21.43108 -21.09885 -20.97241 -19.83299 -19.43033 -16.85143 -16.44257 -15.87676 -15.64105 -15.43591 -15.00847 -14.66368 -14.27972 -14.06323 -13.79326 -13.65321 -13.12772 -12.67786 -12.62021 -12.43361 -12.19832 -12.07620 -11.89664 -11.54672 -11.37151 -11.14462 -11.03715 -10.98044 -10.80026 -10.73522 -10.70447 -10.65517 -10.21723 -10.10574 -9.67268 -9.56698 -9.52076 -9.24746 -8.80118 -8.48833 -6.54121 -5.79866 -3.47147 2.79563 3.31362 3.37596 3.40620 3.42261 4.42037 4.55890 4.62750 4.72269 4.94604 4.97054 5.04935 5.10904 5.17666 5.31596 5.33412 5.46258 5.58141 5.63338 5.66179 5.68047 5.73617 5.82095 5.89680 5.92093 5.95210 6.02328 6.13019 6.14105 6.22043 6.28249 6.39104 6.42280 6.50527 6.66722 6.68197 6.79701 7.04747 7.10071 7.24812 7.61827 7.70375 7.77669 8.39859 8.48233 9.13818 9.74837 10.33765 11.14709 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.003228 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.502751 B = 8672.251335 C = 9393.742147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.112 4.112 5 H 0.094 0.906 6 C -0.146 4.146 7 C 0.511 3.489 8 O -0.545 6.545 9 N -0.726 5.726 10 C 0.120 3.880 11 C -0.145 4.145 12 C 0.155 3.845 13 N -0.552 5.552 14 C -0.261 4.261 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.882 5.882 18 Si 0.894 3.106 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.121 3.879 23 C -0.196 4.196 24 C -0.222 4.222 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.398 0.602 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.028 0.972 41 H 0.095 0.905 42 H 0.255 0.745 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 -15.026 -3.537 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.133 4.133 5 H 0.112 0.888 6 C -0.203 4.203 7 C 0.296 3.704 8 O -0.423 6.423 9 N -0.377 5.377 10 C -0.003 4.003 11 C -0.185 4.185 12 C 0.028 3.972 13 N -0.268 5.268 14 C -0.391 4.391 15 H 0.080 0.920 16 C -0.186 4.186 17 N -0.523 5.523 18 Si 0.723 3.277 19 H -0.212 1.212 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.012 3.988 23 C -0.234 4.234 24 C -0.263 4.263 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.271 -14.156 -3.472 17.831 hybrid contribution 0.739 -0.322 0.928 1.230 sum -9.532 -14.478 -2.544 17.519 Atomic orbital electron populations 1.21766 0.95845 1.01369 1.02014 1.21604 0.95958 0.96783 1.01983 1.21426 0.92408 0.96455 1.03579 1.21343 0.97781 0.93793 1.00394 0.88759 1.21833 1.01292 1.01191 0.96017 1.20659 0.82460 0.91177 0.76072 1.90689 1.55397 1.46507 1.49657 1.46196 1.06813 1.10288 1.74364 1.21445 0.95550 0.81636 1.01716 1.22446 0.91379 1.02987 1.01737 1.20755 0.83398 0.91630 1.01434 1.43344 1.00442 1.82840 1.00188 1.18986 1.10411 1.18146 0.91514 0.91978 1.25252 0.99830 0.93974 0.99532 1.70055 1.33660 1.16816 1.31756 0.86458 0.78106 0.78060 0.85060 1.21182 1.21412 1.20266 1.21232 0.89100 0.97934 0.90569 1.23012 0.97057 1.01310 1.02056 1.23346 1.09729 0.94431 0.98763 0.92687 0.92706 0.92905 0.91765 0.92096 0.91149 0.91297 0.92021 0.91355 0.92053 0.76810 0.92055 0.91584 0.91574 0.93176 0.95318 0.88713 0.93474 0.89728 0.88521 0.90889 0.91328 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.10 -1.02 4.03 -26.73 -0.11 -1.13 16 4 C -0.11 -1.13 2.72 -91.77 -0.25 -1.38 16 5 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.15 -1.25 8.84 37.16 0.33 -0.92 16 7 C 0.51 7.30 7.15 -10.98 -0.08 7.23 16 8 O -0.55 -10.06 15.92 5.56 0.09 -9.97 16 9 N -0.73 -9.97 5.45 -60.29 -0.33 -10.30 16 10 C 0.12 1.99 5.67 -4.05 -0.02 1.97 16 11 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 12 C 0.15 3.43 5.33 -4.04 -0.02 3.41 16 13 N -0.55 -13.21 2.75 -165.66 -0.46 -13.67 16 14 C -0.26 -6.83 8.47 -15.06 -0.13 -6.95 16 15 H 0.06 1.64 6.74 -52.49 -0.35 1.28 16 16 C 0.02 0.41 4.98 -17.43 -0.09 0.32 16 17 N -0.88 -24.77 11.50 55.49 0.64 -24.14 16 18 Si 0.89 21.03 29.60 -169.99 -5.03 16.00 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 C 0.12 2.55 6.57 -67.92 -0.45 2.10 16 23 C -0.20 -3.85 9.80 -26.73 -0.26 -4.12 16 24 C -0.22 -4.56 10.36 -26.73 -0.28 -4.83 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.47 6.57 -51.93 -0.34 0.13 16 34 H 0.06 0.49 7.56 -51.92 -0.39 0.10 16 35 H 0.40 4.45 7.89 -40.82 -0.32 4.13 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 41 H 0.10 2.41 5.59 -51.92 -0.29 2.12 16 42 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 43 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 44 H 0.10 2.07 6.46 -51.93 -0.34 1.74 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -29.94 375.58 -9.40 -39.34 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.69 Total: 6.00 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.29 Total: -8.93 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.15 Total: -48.10 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.94 -9.40 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752248187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.251 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds