Wall clock time and date at job start Tue Mar 31 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 C 1.52998 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46988 * 304.99948 * 4 3 2 6 6 C 1.52998 * 109.47234 * 64.99747 * 4 3 2 7 7 C 1.50694 * 109.47601 * 184.99702 * 4 3 2 8 8 O 1.21285 * 119.99775 * 0.02562 * 7 4 3 9 9 N 1.34780 * 120.00400 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99660 * 0.02562 * 9 7 4 11 11 C 1.46493 * 119.99973 * 180.02562 * 9 7 4 12 12 C 1.53043 * 109.46255 * 240.03175 * 11 9 7 13 13 C 1.53191 * 109.31518 * 178.60297 * 12 11 9 14 14 N 1.46927 * 108.76308 * 54.65734 * 13 12 11 15 15 C 1.36936 * 120.62951 * 126.41073 * 14 13 12 16 16 H 1.08001 * 119.99682 * 332.59689 * 15 14 13 17 17 C 1.38812 * 120.00154 * 152.60605 * 15 14 13 18 18 N 1.31615 * 120.00068 * 159.33690 * 17 15 14 19 19 Si 1.86801 * 119.99928 * 339.33859 * 17 15 14 20 20 H 1.48503 * 109.47100 * 92.94141 * 19 17 15 21 21 H 1.48492 * 109.47325 * 212.94342 * 19 17 15 22 22 H 1.48506 * 109.47040 * 332.94703 * 19 17 15 23 23 C 1.46917 * 118.73809 * 306.37942 * 14 13 12 24 24 C 1.53042 * 109.46190 * 119.97923 * 11 9 7 25 25 H 1.09000 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47389 * 300.00011 * 1 2 3 27 27 H 1.08998 * 109.47423 * 60.00560 * 1 2 3 28 28 H 1.09000 * 109.47177 * 119.99907 * 2 1 3 29 29 H 1.08996 * 109.47442 * 239.99722 * 2 1 3 30 30 H 1.09000 * 109.47010 * 300.00010 * 3 2 1 31 31 H 1.09005 * 109.46989 * 59.99744 * 3 2 1 32 32 H 1.08998 * 109.47204 * 59.99730 * 6 4 3 33 33 H 1.08996 * 109.48025 * 180.02562 * 6 4 3 34 34 H 1.09007 * 109.47420 * 300.00336 * 6 4 3 35 35 H 1.09004 * 109.47449 * 89.99508 * 10 9 7 36 36 H 1.08999 * 109.47278 * 209.99339 * 10 9 7 37 37 H 1.08998 * 109.47525 * 329.99463 * 10 9 7 38 38 H 1.09000 * 109.46432 * 0.02562 * 11 9 7 39 39 H 1.09005 * 109.49623 * 298.57011 * 12 11 9 40 40 H 1.09006 * 109.49652 * 58.66176 * 12 11 9 41 41 H 1.08997 * 109.59961 * 294.86424 * 13 12 11 42 42 H 1.09002 * 109.70207 * 174.50334 * 13 12 11 43 43 H 0.97002 * 120.00255 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.59140 * 293.82621 * 23 14 13 45 45 H 1.09003 * 109.70831 * 173.46865 * 23 14 13 46 46 H 1.08999 * 109.49334 * 301.33508 * 24 11 9 47 47 H 1.09001 * 109.49599 * 61.43020 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0805 0.8327 -1.3063 7 6 4.0722 2.8579 0.1244 8 8 3.2840 3.7762 0.2047 9 7 5.3973 3.1033 0.1469 10 6 6.3493 1.9940 0.0505 11 6 5.8855 4.4792 0.2678 12 6 6.7360 4.8278 -0.9559 13 6 7.2158 6.2783 -0.8429 14 7 7.9088 6.4481 0.4415 15 6 9.1775 6.9613 0.4872 16 1 9.8401 6.8390 -0.3569 17 6 9.6120 7.6384 1.6183 18 7 10.9006 7.7748 1.8493 19 14 8.3679 8.3561 2.8128 20 1 8.0900 7.3714 3.8891 21 1 8.9157 9.6005 3.4097 22 1 7.1090 8.6667 2.0890 23 6 7.2144 6.0575 1.6759 24 6 6.7343 4.6096 1.5345 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.7175 1.4219 -2.1484 33 1 5.1705 0.8323 -1.3058 34 1 3.7173 -0.1911 -1.3960 35 1 6.5862 1.8084 -0.9972 36 1 7.2615 2.2502 0.5893 37 1 5.9087 1.0980 0.4875 38 1 5.0376 5.1615 0.3273 39 1 7.5977 4.1619 -1.0017 40 1 6.1377 4.7121 -1.8597 41 1 6.3595 6.9512 -0.8879 42 1 7.9008 6.5035 -1.6603 43 1 11.2042 8.2483 2.6396 44 1 6.3580 6.7123 1.8363 45 1 7.8972 6.1350 2.5220 46 1 6.1348 4.3386 2.4036 47 1 7.5960 3.9457 1.4650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752297653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:34 Heat of formation + Delta-G solvation = -26.119300 kcal Electronic energy + Delta-G solvation = -23508.895669 eV Core-core repulsion = 20305.928936 eV Total energy + Delta-G solvation = -3202.966733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34393 -37.91550 -36.07544 -35.33143 -32.86721 -31.85186 -30.42805 -30.16277 -27.29517 -26.56173 -25.40447 -23.76135 -22.83504 -21.91346 -20.84821 -19.36213 -18.88229 -17.05291 -16.80832 -16.17944 -15.68602 -15.15309 -15.08878 -14.29500 -14.15952 -13.92275 -13.85417 -13.70004 -13.08675 -13.04870 -12.93853 -12.59936 -12.44002 -12.37759 -12.27249 -11.95231 -11.80244 -11.75861 -11.40430 -11.15480 -10.98681 -10.88186 -10.82814 -10.73099 -10.53634 -10.16838 -10.08637 -9.82015 -9.49262 -9.45807 -8.64355 -8.43041 -6.99659 -5.95709 -3.31505 2.71298 3.08465 3.32602 3.49685 3.53676 4.38285 4.52927 4.53138 4.68315 4.91767 4.94121 4.96106 5.03113 5.09394 5.19733 5.26723 5.31792 5.38177 5.43555 5.50293 5.54017 5.56469 5.65084 5.68945 5.69731 5.75337 5.81933 5.88294 5.92497 6.03605 6.08081 6.11308 6.18990 6.19913 6.34032 6.41239 6.60183 6.61899 6.66557 6.77479 6.90689 7.52704 7.95225 8.27937 8.31919 8.93061 9.71416 10.09213 11.20204 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035051 B = 0.003703 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.648892 B = 7559.567592 C = 7856.429760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.109 4.109 5 H 0.094 0.906 6 C -0.157 4.157 7 C 0.514 3.486 8 O -0.545 6.545 9 N -0.608 5.608 10 C 0.074 3.926 11 C 0.144 3.856 12 C -0.138 4.138 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.139 4.139 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.027 0.973 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 -17.542 -4.546 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.131 4.131 5 H 0.112 0.888 6 C -0.214 4.214 7 C 0.302 3.698 8 O -0.422 6.422 9 N -0.340 5.340 10 C -0.069 4.069 11 C 0.041 3.959 12 C -0.178 4.178 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.711 3.289 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.180 4.180 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.234 -16.963 -4.420 23.224 hybrid contribution -0.454 0.357 0.825 1.007 sum -15.688 -16.605 -3.594 23.125 Atomic orbital electron populations 1.21761 0.95831 1.01383 1.02010 1.21595 0.95964 0.96751 1.01959 1.21426 0.92406 0.96471 1.03516 1.21304 0.97609 0.93776 1.00370 0.88807 1.22084 1.02424 1.01041 0.95886 1.20696 0.82021 0.91239 0.75842 1.90676 1.54935 1.46536 1.50057 1.48082 1.05536 1.08079 1.72292 1.21926 0.94104 0.89244 1.01624 1.21124 0.97328 0.81627 0.95773 1.22347 0.98982 1.00228 0.96269 1.20889 0.95461 0.92006 0.89217 1.44391 1.15237 1.73109 1.00242 1.18917 0.86757 1.29293 1.03801 0.89640 1.25274 0.95595 0.98628 0.98042 1.69833 1.12976 1.44339 1.27999 0.86979 0.82365 0.78463 0.81047 1.21639 1.23113 1.19468 1.21305 0.95835 0.91722 0.90855 1.22379 0.99065 1.00380 0.96134 0.92887 0.92703 0.92703 0.92114 0.91778 0.91357 0.91197 0.92213 0.90973 0.91479 0.92320 0.90505 0.91230 0.88679 0.91655 0.92573 0.95780 0.91510 0.92765 0.95553 0.90656 0.92647 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.15 0.37 -0.73 16 2 C -0.13 -0.94 5.69 -26.74 -0.15 -1.09 16 3 C -0.10 -1.00 4.03 -26.73 -0.11 -1.11 16 4 C -0.11 -1.09 1.92 -91.78 -0.18 -1.27 16 5 H 0.09 0.80 7.40 -51.93 -0.38 0.42 16 6 C -0.16 -1.26 8.58 37.16 0.32 -0.94 16 7 C 0.51 7.33 7.08 -10.99 -0.08 7.25 16 8 O -0.54 -9.93 15.25 5.55 0.08 -9.85 16 9 N -0.61 -8.40 2.76 -173.89 -0.48 -8.88 16 10 C 0.07 0.76 7.89 59.84 0.47 1.23 16 11 C 0.14 2.41 2.48 -67.89 -0.17 2.24 16 12 C -0.14 -2.29 5.34 -26.61 -0.14 -2.44 16 13 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 14 N -0.61 -14.41 2.77 -172.33 -0.48 -14.88 16 15 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 17 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 18 N -0.91 -27.79 13.97 55.49 0.78 -27.02 16 19 Si 0.88 22.60 24.35 -169.99 -4.14 18.47 16 20 H -0.29 -7.14 6.62 56.52 0.37 -6.76 16 21 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 22 H -0.27 -6.87 6.64 56.52 0.38 -6.50 16 23 C 0.13 2.86 4.20 -3.72 -0.02 2.84 16 24 C -0.14 -2.51 5.31 -26.61 -0.14 -2.66 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 4.53 -51.93 -0.24 0.30 16 34 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16 35 H 0.06 0.54 6.95 -51.93 -0.36 0.17 16 36 H 0.08 0.85 6.46 -51.93 -0.34 0.51 16 37 H 0.07 0.55 6.01 -51.93 -0.31 0.24 16 38 H 0.10 1.81 6.90 -51.93 -0.36 1.45 16 39 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.03 0.59 7.07 -51.93 -0.37 0.23 16 45 H 0.08 1.81 4.50 -51.93 -0.23 1.58 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.21 6.72 -51.93 -0.35 0.86 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -32.21 346.60 -7.36 -39.57 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.26 Total: -2.16 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.09 Total: -0.47 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.18 Total: -50.78 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.21 -7.36 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752297653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.448 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds