Wall clock time and date at job start Tue Mar 31 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 C 1.52998 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46988 * 304.99948 * 4 3 2 6 6 C 1.52998 * 109.47234 * 64.99747 * 4 3 2 7 7 C 1.50694 * 109.47601 * 184.99702 * 4 3 2 8 8 O 1.21285 * 119.99775 * 0.02562 * 7 4 3 9 9 N 1.34780 * 120.00400 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99660 * 0.02562 * 9 7 4 11 11 C 1.46493 * 119.99973 * 180.02562 * 9 7 4 12 12 C 1.53043 * 109.46255 * 240.03175 * 11 9 7 13 13 C 1.53191 * 109.31518 * 178.60297 * 12 11 9 14 14 N 1.46927 * 108.76308 * 54.65734 * 13 12 11 15 15 C 1.36936 * 120.62951 * 126.41073 * 14 13 12 16 16 H 1.08001 * 119.99682 * 332.59689 * 15 14 13 17 17 C 1.38812 * 120.00154 * 152.60605 * 15 14 13 18 18 N 1.31615 * 120.00068 * 159.33690 * 17 15 14 19 19 Si 1.86801 * 119.99928 * 339.33859 * 17 15 14 20 20 H 1.48503 * 109.47100 * 92.94141 * 19 17 15 21 21 H 1.48492 * 109.47325 * 212.94342 * 19 17 15 22 22 H 1.48506 * 109.47040 * 332.94703 * 19 17 15 23 23 C 1.46917 * 118.73809 * 306.37942 * 14 13 12 24 24 C 1.53042 * 109.46190 * 119.97923 * 11 9 7 25 25 H 1.09000 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47389 * 300.00011 * 1 2 3 27 27 H 1.08998 * 109.47423 * 60.00560 * 1 2 3 28 28 H 1.09000 * 109.47177 * 119.99907 * 2 1 3 29 29 H 1.08996 * 109.47442 * 239.99722 * 2 1 3 30 30 H 1.09000 * 109.47010 * 300.00010 * 3 2 1 31 31 H 1.09005 * 109.46989 * 59.99744 * 3 2 1 32 32 H 1.08998 * 109.47204 * 59.99730 * 6 4 3 33 33 H 1.08996 * 109.48025 * 180.02562 * 6 4 3 34 34 H 1.09007 * 109.47420 * 300.00336 * 6 4 3 35 35 H 1.09004 * 109.47449 * 89.99508 * 10 9 7 36 36 H 1.08999 * 109.47278 * 209.99339 * 10 9 7 37 37 H 1.08998 * 109.47525 * 329.99463 * 10 9 7 38 38 H 1.09000 * 109.46432 * 0.02562 * 11 9 7 39 39 H 1.09005 * 109.49623 * 298.57011 * 12 11 9 40 40 H 1.09006 * 109.49652 * 58.66176 * 12 11 9 41 41 H 1.08997 * 109.59961 * 294.86424 * 13 12 11 42 42 H 1.09002 * 109.70207 * 174.50334 * 13 12 11 43 43 H 0.97002 * 120.00255 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.59140 * 293.82621 * 23 14 13 45 45 H 1.09003 * 109.70831 * 173.46865 * 23 14 13 46 46 H 1.08999 * 109.49334 * 301.33508 * 24 11 9 47 47 H 1.09001 * 109.49599 * 61.43020 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0805 0.8327 -1.3063 7 6 4.0722 2.8579 0.1244 8 8 3.2840 3.7762 0.2047 9 7 5.3973 3.1033 0.1469 10 6 6.3493 1.9940 0.0505 11 6 5.8855 4.4792 0.2678 12 6 6.7360 4.8278 -0.9559 13 6 7.2158 6.2783 -0.8429 14 7 7.9088 6.4481 0.4415 15 6 9.1775 6.9613 0.4872 16 1 9.8401 6.8390 -0.3569 17 6 9.6120 7.6384 1.6183 18 7 10.9006 7.7748 1.8493 19 14 8.3679 8.3561 2.8128 20 1 8.0900 7.3714 3.8891 21 1 8.9157 9.6005 3.4097 22 1 7.1090 8.6667 2.0890 23 6 7.2144 6.0575 1.6759 24 6 6.7343 4.6096 1.5345 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.7175 1.4219 -2.1484 33 1 5.1705 0.8323 -1.3058 34 1 3.7173 -0.1911 -1.3960 35 1 6.5862 1.8084 -0.9972 36 1 7.2615 2.2502 0.5893 37 1 5.9087 1.0980 0.4875 38 1 5.0376 5.1615 0.3273 39 1 7.5977 4.1619 -1.0017 40 1 6.1377 4.7121 -1.8597 41 1 6.3595 6.9512 -0.8879 42 1 7.9008 6.5035 -1.6603 43 1 11.2042 8.2483 2.6396 44 1 6.3580 6.7123 1.8363 45 1 7.8972 6.1350 2.5220 46 1 6.1348 4.3386 2.4036 47 1 7.5960 3.9457 1.4650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752297653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:34 Heat of formation + Delta-G solvation = -46.009342 kcal Electronic energy + Delta-G solvation = -23509.758166 eV Core-core repulsion = 20305.928936 eV Total energy + Delta-G solvation = -3203.829230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46544 -39.39460 -36.94912 -36.68647 -34.46699 -33.09061 -32.01729 -31.67119 -28.20703 -27.28947 -27.03723 -24.96500 -24.41338 -23.31120 -21.78140 -20.80203 -19.95429 -18.83298 -18.05109 -17.51757 -16.85520 -16.53973 -16.08156 -15.96683 -15.39792 -15.23486 -14.92350 -14.80500 -14.58690 -14.38160 -14.17706 -13.84238 -13.70978 -13.49928 -13.43657 -13.09449 -13.04502 -12.65728 -12.55123 -12.44484 -12.20727 -12.09521 -12.04489 -11.83385 -11.81429 -11.67885 -11.43274 -11.38909 -11.36568 -10.80765 -10.56348 -9.60168 -8.99646 -8.18756 -5.50481 1.26484 1.39076 1.47491 1.64069 2.00369 2.38657 3.02659 3.29468 3.48986 3.78139 3.83304 3.92745 3.99232 4.18199 4.22150 4.27167 4.33569 4.38702 4.39754 4.45979 4.57448 4.62085 4.65297 4.72140 4.80998 4.82984 4.85956 4.89412 4.92923 5.00698 5.02693 5.03742 5.06971 5.13263 5.13766 5.27250 5.31981 5.39378 5.46513 5.52094 5.58158 5.84678 6.10989 6.46388 6.87823 7.19362 7.58799 8.00237 9.00890 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035051 B = 0.003703 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.648892 B = 7559.567592 C = 7856.429760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.098 4.098 4 C -0.101 4.101 5 H 0.118 0.882 6 C -0.153 4.153 7 C 0.507 3.493 8 O -0.593 6.593 9 N -0.606 5.606 10 C 0.067 3.933 11 C 0.150 3.850 12 C -0.123 4.123 13 C 0.145 3.855 14 N -0.618 5.618 15 C -0.246 4.246 16 H 0.059 0.941 17 C -0.030 4.030 18 N -0.953 5.953 19 Si 0.938 3.062 20 H -0.274 1.274 21 H -0.309 1.309 22 H -0.269 1.269 23 C 0.124 3.876 24 C -0.127 4.127 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.026 0.974 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.023 0.977 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -20.466 -4.836 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.136 4.136 4 C -0.122 4.122 5 H 0.136 0.864 6 C -0.210 4.210 7 C 0.297 3.703 8 O -0.473 6.473 9 N -0.337 5.337 10 C -0.075 4.075 11 C 0.047 3.953 12 C -0.162 4.162 13 C 0.020 3.980 14 N -0.343 5.343 15 C -0.375 4.375 16 H 0.077 0.923 17 C -0.225 4.225 18 N -0.599 5.599 19 Si 0.768 3.232 20 H -0.201 1.201 21 H -0.238 1.238 22 H -0.194 1.194 23 C -0.001 4.001 24 C -0.167 4.167 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.603 -19.938 -4.726 26.373 hybrid contribution -0.060 1.246 0.831 1.499 sum -16.663 -18.692 -3.895 25.342 Atomic orbital electron populations 1.21786 0.95887 1.02103 1.01475 1.21565 0.95925 0.94904 1.03185 1.21394 0.92676 0.97915 1.01652 1.21353 0.97303 0.91027 1.02493 0.86447 1.22093 1.03059 1.01913 0.93929 1.21542 0.81578 0.92622 0.74562 1.90658 1.56117 1.48379 1.52187 1.48069 1.06197 1.07569 1.71842 1.22226 0.93225 0.88949 1.03087 1.20782 0.96090 0.83413 0.95064 1.22150 0.99314 0.97691 0.97076 1.21056 0.95137 0.94414 0.87406 1.44509 1.14366 1.73211 1.02186 1.18885 0.87971 1.28138 1.02521 0.92295 1.25816 0.96859 0.99652 1.00164 1.69940 1.14677 1.46163 1.29135 0.86041 0.80042 0.77542 0.79577 1.20125 1.23800 1.19367 1.21301 0.94969 0.94378 0.89483 1.22194 0.99591 0.97393 0.97480 0.91498 0.93444 0.93158 0.90985 0.90285 0.93049 0.93410 0.93479 0.89896 0.89027 0.90544 0.91134 0.88156 0.91114 0.91046 0.90696 0.95611 0.91602 0.92890 0.95873 0.92637 0.91413 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.43 5.69 30.59 0.17 -1.26 16 3 C -0.10 -1.80 4.03 30.59 0.12 -1.68 16 4 C -0.10 -1.71 1.92 -11.54 -0.02 -1.73 16 5 H 0.12 1.49 7.40 -2.39 -0.02 1.47 16 6 C -0.15 -1.85 8.58 71.98 0.62 -1.24 16 7 C 0.51 13.53 7.08 87.65 0.62 14.15 16 8 O -0.59 -21.50 15.25 -3.05 -0.05 -21.55 16 9 N -0.61 -15.20 2.76 -822.45 -2.27 -17.47 16 10 C 0.07 1.11 7.89 127.77 1.01 2.12 16 11 C 0.15 4.80 2.48 45.02 0.11 4.91 16 12 C -0.12 -3.84 5.34 30.67 0.16 -3.67 16 13 C 0.15 5.66 6.52 86.36 0.56 6.23 16 14 N -0.62 -29.24 2.77 -699.12 -1.94 -31.18 16 15 C -0.25 -13.86 10.03 84.03 0.84 -13.01 16 16 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 17 C -0.03 -1.75 5.23 84.86 0.44 -1.30 16 18 N -0.95 -59.64 13.97 21.65 0.30 -59.33 16 19 Si 0.94 47.39 24.35 68.60 1.67 49.06 16 20 H -0.27 -13.09 6.62 99.48 0.66 -12.43 16 21 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 22 H -0.27 -13.35 6.64 99.48 0.66 -12.69 16 23 C 0.12 5.41 4.20 86.36 0.36 5.77 16 24 C -0.13 -4.37 5.31 30.67 0.16 -4.20 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.74 6.57 -2.39 -0.02 0.73 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.08 7.95 -2.38 -0.02 1.06 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.84 4.53 -2.39 -0.01 0.83 16 34 H 0.09 0.70 6.57 -2.38 -0.02 0.69 16 35 H 0.08 1.05 6.95 -2.38 -0.02 1.03 16 36 H 0.07 1.31 6.46 -2.39 -0.02 1.30 16 37 H 0.10 1.08 6.01 -2.39 -0.01 1.07 16 38 H 0.07 2.65 6.90 -2.39 -0.02 2.64 16 39 H 0.07 2.17 7.72 -2.38 -0.02 2.16 16 40 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 43 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.02 1.03 7.07 -2.39 -0.02 1.01 16 45 H 0.06 2.63 4.50 -2.39 -0.01 2.62 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.07 2.47 6.72 -2.39 -0.02 2.46 16 Total: -1.00 -71.69 346.60 4.44 -67.25 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.83 Total: 9.35 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.89 Total: 3.87 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.90 Total: -107.98 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.67 Total: 49.06 kcal Total: -71.69 4.44 -67.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752297653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.242 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds