Wall clock time and date at job start Tue Mar 31 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47276 * 2 1 4 4 C 1.53000 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47107 * 54.99818 * 4 3 2 6 6 C 1.53000 * 109.47013 * 294.99861 * 4 3 2 7 7 C 1.50703 * 109.47199 * 175.00214 * 4 3 2 8 8 O 1.21277 * 120.00244 * 21.80481 * 7 4 3 9 9 N 1.34776 * 119.99635 * 201.81061 * 7 4 3 10 10 C 1.46499 * 119.99635 * 184.92837 * 9 7 4 11 11 C 1.46501 * 120.00334 * 4.92232 * 9 7 4 12 12 C 1.53045 * 109.45995 * 234.63240 * 11 9 7 13 13 C 1.53194 * 109.31040 * 178.60101 * 12 11 9 14 14 N 1.46927 * 108.76640 * 54.65177 * 13 12 11 15 15 C 1.36938 * 120.62932 * 126.40141 * 14 13 12 16 16 H 1.07996 * 120.00049 * 330.87591 * 15 14 13 17 17 C 1.38815 * 119.99584 * 150.86985 * 15 14 13 18 18 N 1.31628 * 119.99694 * 166.72903 * 17 15 14 19 19 Si 1.86800 * 120.00337 * 346.72783 * 17 15 14 20 20 H 1.48494 * 109.46886 * 95.39780 * 19 17 15 21 21 H 1.48502 * 109.46970 * 215.39637 * 19 17 15 22 22 H 1.48493 * 109.46794 * 335.39475 * 19 17 15 23 23 C 1.46928 * 118.74009 * 306.38919 * 14 13 12 24 24 C 1.53042 * 109.46017 * 114.57478 * 11 9 7 25 25 H 1.08995 * 109.47142 * 59.99651 * 1 2 3 26 26 H 1.09002 * 109.47058 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46821 * 299.99769 * 1 2 3 28 28 H 1.08993 * 109.47569 * 120.00654 * 2 1 3 29 29 H 1.09009 * 109.46821 * 240.00230 * 2 1 3 30 30 H 1.09005 * 109.47241 * 300.00351 * 3 2 1 31 31 H 1.08998 * 109.47318 * 59.99998 * 3 2 1 32 32 H 1.08999 * 109.47275 * 184.71093 * 6 4 3 33 33 H 1.09003 * 109.47346 * 304.71665 * 6 4 3 34 34 H 1.09002 * 109.47305 * 64.70966 * 6 4 3 35 35 H 1.09002 * 109.47624 * 87.80265 * 10 9 7 36 36 H 1.09007 * 109.46980 * 207.79699 * 10 9 7 37 37 H 1.08995 * 109.47340 * 327.79304 * 10 9 7 38 38 H 1.09006 * 109.45819 * 354.60373 * 11 9 7 39 39 H 1.08998 * 109.49548 * 298.56321 * 12 11 9 40 40 H 1.08996 * 109.49893 * 58.66617 * 12 11 9 41 41 H 1.09007 * 109.59966 * 294.86772 * 13 12 11 42 42 H 1.08996 * 109.70335 * 174.50416 * 13 12 11 43 43 H 0.96995 * 119.99699 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.58141 * 293.81315 * 23 14 13 45 45 H 1.09001 * 109.70473 * 173.46328 * 23 14 13 46 46 H 1.08999 * 109.49774 * 301.34031 * 24 11 9 47 47 H 1.09001 * 109.49301 * 61.40669 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0805 0.8326 1.3064 7 6 4.0723 2.8579 -0.1244 8 8 3.3552 3.7852 0.1865 9 7 5.3184 3.0932 -0.5808 10 6 5.8456 4.4599 -0.5996 11 6 6.1458 1.9823 -1.0579 12 6 7.4793 1.9804 -0.3069 13 6 8.3274 0.7970 -0.7834 14 7 8.4584 0.8676 -2.2451 15 6 9.6931 0.8432 -2.8369 16 1 10.5518 1.2334 -2.3110 17 6 9.8408 0.3167 -4.1129 18 7 10.9531 0.5237 -4.7855 19 14 8.4610 -0.6855 -4.8753 20 1 7.6233 0.1947 -5.7288 21 1 9.0393 -1.7738 -5.7039 22 1 7.6239 -1.2741 -3.7993 23 6 7.2395 0.9647 -3.0598 24 6 6.4035 2.1459 -2.5576 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 5.1673 0.9086 1.3427 33 1 3.6502 1.3709 2.1510 34 1 3.7878 -0.2161 1.3568 35 1 6.3145 4.6818 0.3590 36 1 6.5845 4.5533 -1.3956 37 1 5.0304 5.1614 -0.7765 38 1 5.6270 1.0403 -0.8793 39 1 8.0097 2.9117 -0.5052 40 1 7.2940 1.8874 0.7632 41 1 7.8403 -0.1376 -0.5050 42 1 9.3153 0.8449 -0.3253 43 1 11.0562 0.1561 -5.6771 44 1 6.6638 0.0437 -2.9670 45 1 7.5073 1.1244 -4.1043 46 1 5.4524 2.1707 -3.0896 47 1 6.9437 3.0759 -2.7345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752297655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:38 Heat of formation + Delta-G solvation = -28.372494 kcal Electronic energy + Delta-G solvation = -23873.161719 eV Core-core repulsion = 20670.097280 eV Total energy + Delta-G solvation = -3203.064439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35294 -38.01930 -36.14144 -35.19707 -32.32099 -32.19148 -30.57795 -30.25010 -27.39151 -26.80024 -25.14390 -23.46323 -22.99677 -22.05071 -20.92917 -19.74764 -18.54514 -17.20459 -16.93672 -15.92504 -15.63146 -15.30054 -14.98644 -14.31380 -14.11352 -14.01702 -13.93314 -13.69010 -13.20060 -13.03910 -12.91059 -12.50274 -12.47565 -12.28517 -12.11829 -12.04115 -11.92617 -11.79024 -11.41425 -11.16516 -11.06457 -11.01799 -10.78391 -10.65007 -10.61011 -10.25557 -10.03318 -9.93130 -9.50172 -9.48861 -8.75943 -8.46747 -7.03780 -5.98160 -3.40713 2.69217 3.08618 3.26293 3.40713 3.44346 4.40474 4.46090 4.60571 4.76339 4.84210 4.93810 5.00535 5.05530 5.14459 5.18950 5.30629 5.32349 5.44448 5.51275 5.53890 5.60968 5.64263 5.68087 5.71123 5.72315 5.81794 5.85782 5.91478 5.93607 5.96566 6.03975 6.09525 6.15497 6.20479 6.23096 6.29439 6.46468 6.52031 6.57381 6.59320 6.84096 7.50619 7.91227 8.25230 8.28120 8.86808 9.65338 10.01628 11.17786 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.004828 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.436701 B = 5797.691865 C = 6522.915584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.099 4.099 4 C -0.115 4.115 5 H 0.094 0.906 6 C -0.142 4.142 7 C 0.518 3.482 8 O -0.551 6.551 9 N -0.608 5.608 10 C 0.085 3.915 11 C 0.139 3.861 12 C -0.142 4.142 13 C 0.152 3.848 14 N -0.607 5.607 15 C -0.261 4.261 16 H 0.087 0.913 17 C 0.022 3.978 18 N -0.914 5.914 19 Si 0.889 3.111 20 H -0.290 1.290 21 H -0.304 1.304 22 H -0.265 1.265 23 C 0.127 3.873 24 C -0.145 4.145 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.263 0.737 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 0.397 10.254 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.136 4.136 5 H 0.112 0.888 6 C -0.200 4.200 7 C 0.306 3.694 8 O -0.429 6.429 9 N -0.340 5.340 10 C -0.058 4.058 11 C 0.036 3.964 12 C -0.182 4.182 13 C 0.026 3.974 14 N -0.331 5.331 15 C -0.390 4.390 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.557 5.557 19 Si 0.720 3.280 20 H -0.218 1.218 21 H -0.233 1.233 22 H -0.190 1.190 23 C 0.000 4.000 24 C -0.185 4.185 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.999 0.867 10.273 19.033 hybrid contribution -0.521 -0.458 -0.727 1.005 sum -16.520 0.409 9.546 19.084 Atomic orbital electron populations 1.21758 0.95853 1.01434 1.01855 1.21598 0.95897 0.96667 1.02252 1.21438 0.92370 0.96696 1.03213 1.21388 0.97561 0.93781 1.00867 0.88764 1.21788 1.01600 1.01105 0.95476 1.20677 0.80971 0.91361 0.76374 1.90645 1.55966 1.45982 1.50325 1.48132 1.14535 1.08590 1.62695 1.21567 0.99641 0.82918 1.01674 1.21341 0.91710 0.88837 0.94522 1.22405 0.95436 1.01957 0.98425 1.20888 0.98101 0.93708 0.84740 1.44352 1.02293 1.85823 1.00584 1.18943 0.85401 1.34690 0.99939 0.89583 1.25329 0.96317 0.98578 0.97452 1.69767 1.26413 1.47315 1.12214 0.86909 0.81873 0.80326 0.78849 1.21823 1.23308 1.18951 1.21429 0.88015 0.94428 0.96083 1.22461 0.99953 1.01831 0.94299 0.92778 0.92829 0.92769 0.91653 0.91918 0.91750 0.91048 0.91856 0.92088 0.91191 0.93008 0.90787 0.91098 0.89143 0.91312 0.92281 0.95721 0.91377 0.92712 0.95015 0.90995 0.92495 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.11 5.69 -26.74 -0.15 -1.26 16 3 C -0.10 -1.07 4.09 -26.74 -0.11 -1.18 16 4 C -0.11 -1.32 1.86 -91.77 -0.17 -1.49 16 5 H 0.09 1.06 6.38 -51.93 -0.33 0.73 16 6 C -0.14 -1.42 8.59 37.16 0.32 -1.10 16 7 C 0.52 7.50 6.81 -10.98 -0.07 7.42 16 8 O -0.55 -9.57 15.74 5.56 0.09 -9.48 16 9 N -0.61 -8.51 2.76 -173.88 -0.48 -8.99 16 10 C 0.08 1.11 9.35 59.85 0.56 1.67 16 11 C 0.14 1.99 1.98 -67.88 -0.13 1.86 16 12 C -0.14 -2.11 5.25 -26.61 -0.14 -2.25 16 13 C 0.15 2.72 6.52 -3.71 -0.02 2.70 16 14 N -0.61 -13.47 2.79 -172.32 -0.48 -13.95 16 15 C -0.26 -7.02 10.09 -15.06 -0.15 -7.17 16 16 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 17 C 0.02 0.62 5.36 -17.43 -0.09 0.52 16 18 N -0.91 -27.55 13.97 55.49 0.78 -26.78 16 19 Si 0.89 21.68 24.30 -169.99 -4.13 17.55 16 20 H -0.29 -6.90 6.80 56.52 0.38 -6.51 16 21 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 22 H -0.26 -6.13 5.80 56.52 0.33 -5.80 16 23 C 0.13 2.57 4.11 -3.71 -0.02 2.55 16 24 C -0.15 -2.40 5.41 -26.61 -0.14 -2.55 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.53 6.67 -51.93 -0.35 0.18 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 32 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.58 6.80 -51.93 -0.35 0.23 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.95 6.68 -51.93 -0.35 0.60 16 37 H 0.07 0.96 7.42 -51.93 -0.39 0.57 16 38 H 0.09 1.22 5.01 -51.93 -0.26 0.96 16 39 H 0.07 1.08 7.54 -51.93 -0.39 0.69 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.03 0.63 6.62 -51.93 -0.34 0.29 16 45 H 0.07 1.63 4.30 -51.93 -0.22 1.41 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.22 6.94 -51.93 -0.36 0.86 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -30.82 349.96 -7.36 -38.18 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.44 Total: -0.68 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.19 Total: -49.72 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.13 Total: 17.55 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.82 -7.36 -38.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752297655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.807 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds