Wall clock time and date at job start Tue Mar 31 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47276 * 2 1 4 4 C 1.53000 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47107 * 54.99818 * 4 3 2 6 6 C 1.53000 * 109.47013 * 294.99861 * 4 3 2 7 7 C 1.50703 * 109.47199 * 175.00214 * 4 3 2 8 8 O 1.21277 * 120.00244 * 21.80481 * 7 4 3 9 9 N 1.34776 * 119.99635 * 201.81061 * 7 4 3 10 10 C 1.46499 * 119.99635 * 184.92837 * 9 7 4 11 11 C 1.46501 * 120.00334 * 4.92232 * 9 7 4 12 12 C 1.53045 * 109.45995 * 234.63240 * 11 9 7 13 13 C 1.53194 * 109.31040 * 178.60101 * 12 11 9 14 14 N 1.46927 * 108.76640 * 54.65177 * 13 12 11 15 15 C 1.36938 * 120.62932 * 126.40141 * 14 13 12 16 16 H 1.07996 * 120.00049 * 330.87591 * 15 14 13 17 17 C 1.38815 * 119.99584 * 150.86985 * 15 14 13 18 18 N 1.31628 * 119.99694 * 166.72903 * 17 15 14 19 19 Si 1.86800 * 120.00337 * 346.72783 * 17 15 14 20 20 H 1.48494 * 109.46886 * 95.39780 * 19 17 15 21 21 H 1.48502 * 109.46970 * 215.39637 * 19 17 15 22 22 H 1.48493 * 109.46794 * 335.39475 * 19 17 15 23 23 C 1.46928 * 118.74009 * 306.38919 * 14 13 12 24 24 C 1.53042 * 109.46017 * 114.57478 * 11 9 7 25 25 H 1.08995 * 109.47142 * 59.99651 * 1 2 3 26 26 H 1.09002 * 109.47058 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46821 * 299.99769 * 1 2 3 28 28 H 1.08993 * 109.47569 * 120.00654 * 2 1 3 29 29 H 1.09009 * 109.46821 * 240.00230 * 2 1 3 30 30 H 1.09005 * 109.47241 * 300.00351 * 3 2 1 31 31 H 1.08998 * 109.47318 * 59.99998 * 3 2 1 32 32 H 1.08999 * 109.47275 * 184.71093 * 6 4 3 33 33 H 1.09003 * 109.47346 * 304.71665 * 6 4 3 34 34 H 1.09002 * 109.47305 * 64.70966 * 6 4 3 35 35 H 1.09002 * 109.47624 * 87.80265 * 10 9 7 36 36 H 1.09007 * 109.46980 * 207.79699 * 10 9 7 37 37 H 1.08995 * 109.47340 * 327.79304 * 10 9 7 38 38 H 1.09006 * 109.45819 * 354.60373 * 11 9 7 39 39 H 1.08998 * 109.49548 * 298.56321 * 12 11 9 40 40 H 1.08996 * 109.49893 * 58.66617 * 12 11 9 41 41 H 1.09007 * 109.59966 * 294.86772 * 13 12 11 42 42 H 1.08996 * 109.70335 * 174.50416 * 13 12 11 43 43 H 0.96995 * 119.99699 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.58141 * 293.81315 * 23 14 13 45 45 H 1.09001 * 109.70473 * 173.46328 * 23 14 13 46 46 H 1.08999 * 109.49774 * 301.34031 * 24 11 9 47 47 H 1.09001 * 109.49301 * 61.40669 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0805 0.8326 1.3064 7 6 4.0723 2.8579 -0.1244 8 8 3.3552 3.7852 0.1865 9 7 5.3184 3.0932 -0.5808 10 6 5.8456 4.4599 -0.5996 11 6 6.1458 1.9823 -1.0579 12 6 7.4793 1.9804 -0.3069 13 6 8.3274 0.7970 -0.7834 14 7 8.4584 0.8676 -2.2451 15 6 9.6931 0.8432 -2.8369 16 1 10.5518 1.2334 -2.3110 17 6 9.8408 0.3167 -4.1129 18 7 10.9531 0.5237 -4.7855 19 14 8.4610 -0.6855 -4.8753 20 1 7.6233 0.1947 -5.7288 21 1 9.0393 -1.7738 -5.7039 22 1 7.6239 -1.2741 -3.7993 23 6 7.2395 0.9647 -3.0598 24 6 6.4035 2.1459 -2.5576 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 5.1673 0.9086 1.3427 33 1 3.6502 1.3709 2.1510 34 1 3.7878 -0.2161 1.3568 35 1 6.3145 4.6818 0.3590 36 1 6.5845 4.5533 -1.3956 37 1 5.0304 5.1614 -0.7765 38 1 5.6270 1.0403 -0.8793 39 1 8.0097 2.9117 -0.5052 40 1 7.2940 1.8874 0.7632 41 1 7.8403 -0.1376 -0.5050 42 1 9.3153 0.8449 -0.3253 43 1 11.0562 0.1561 -5.6771 44 1 6.6638 0.0437 -2.9670 45 1 7.5073 1.1244 -4.1043 46 1 5.4524 2.1707 -3.0896 47 1 6.9437 3.0759 -2.7345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752297655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:37 Heat of formation + Delta-G solvation = -46.659250 kcal Electronic energy + Delta-G solvation = -23873.954692 eV Core-core repulsion = 20670.097280 eV Total energy + Delta-G solvation = -3203.857412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48654 -39.40844 -37.01734 -36.61541 -34.17333 -32.94497 -32.01157 -31.88363 -28.45672 -27.55096 -26.84829 -24.54716 -24.35293 -23.51914 -21.74045 -21.16808 -19.68178 -18.78835 -18.25622 -17.34332 -16.84905 -16.52257 -16.05554 -15.93280 -15.36760 -15.24368 -14.89029 -14.81947 -14.65201 -14.35632 -14.09541 -13.84210 -13.67489 -13.47242 -13.33210 -13.12027 -13.07258 -12.76975 -12.65839 -12.47952 -12.17561 -12.08682 -11.95343 -11.84725 -11.68298 -11.64507 -11.47542 -11.33331 -11.31849 -10.78749 -10.61897 -9.66015 -8.90029 -8.12462 -5.50512 1.33133 1.44152 1.52609 1.58855 1.98561 2.44202 3.12409 3.31433 3.44938 3.70247 3.79237 3.91416 3.98662 4.14597 4.24724 4.31657 4.34736 4.39655 4.43060 4.49365 4.57898 4.60850 4.66194 4.70854 4.81719 4.85033 4.87308 4.90603 4.91783 4.94930 5.01184 5.04867 5.10934 5.13189 5.19933 5.23128 5.31727 5.37522 5.44918 5.51173 5.57354 5.90447 6.15835 6.38838 6.94139 7.13999 7.64013 8.03078 9.07408 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.004828 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.436701 B = 5797.691865 C = 6522.915584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.112 4.112 5 H 0.105 0.895 6 C -0.140 4.140 7 C 0.514 3.486 8 O -0.584 6.584 9 N -0.606 5.606 10 C 0.083 3.917 11 C 0.148 3.852 12 C -0.131 4.131 13 C 0.148 3.852 14 N -0.621 5.621 15 C -0.245 4.245 16 H 0.051 0.949 17 C -0.042 4.042 18 N -0.967 5.967 19 Si 0.952 3.048 20 H -0.283 1.283 21 H -0.318 1.318 22 H -0.238 1.238 23 C 0.122 3.878 24 C -0.137 4.137 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.260 0.740 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.231 -0.961 11.593 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.133 4.133 4 C -0.133 4.133 5 H 0.123 0.877 6 C -0.197 4.197 7 C 0.304 3.696 8 O -0.465 6.465 9 N -0.337 5.337 10 C -0.059 4.059 11 C 0.045 3.955 12 C -0.170 4.170 13 C 0.023 3.977 14 N -0.345 5.345 15 C -0.375 4.375 16 H 0.068 0.932 17 C -0.235 4.235 18 N -0.614 5.614 19 Si 0.781 3.219 20 H -0.210 1.210 21 H -0.248 1.248 22 H -0.161 1.161 23 C -0.003 4.003 24 C -0.177 4.177 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.513 -0.483 11.660 21.884 hybrid contribution 0.279 0.073 -1.057 1.095 sum -18.234 -0.411 10.603 21.096 Atomic orbital electron populations 1.21771 0.95515 1.02094 1.01661 1.21579 0.96214 0.95147 1.03016 1.21397 0.92021 0.97929 1.01990 1.21460 0.97876 0.91805 1.02192 0.87720 1.21804 1.01493 1.02186 0.94208 1.21257 0.80536 0.92341 0.75435 1.90635 1.56710 1.47352 1.51761 1.48122 1.14519 1.08647 1.62383 1.21598 0.99420 0.82673 1.02231 1.21230 0.91720 0.89762 0.92801 1.22251 0.94899 0.99879 1.00005 1.21075 0.98670 0.95982 0.82008 1.44470 1.01266 1.86252 1.02555 1.18872 0.86563 1.32543 0.99498 0.93159 1.26029 0.98849 1.00303 0.98366 1.69927 1.29210 1.49506 1.12750 0.85894 0.79250 0.78281 0.78438 1.20987 1.24801 1.16144 1.21465 0.87661 0.96603 0.94604 1.22322 0.99842 0.99475 0.96105 0.93222 0.91726 0.92818 0.90485 0.91442 0.93159 0.92188 0.91807 0.92514 0.89025 0.92069 0.90750 0.91741 0.87125 0.92578 0.89518 0.93358 0.92345 0.93129 0.93269 0.93557 0.90717 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.75 5.69 30.59 0.17 -1.58 16 3 C -0.10 -1.84 4.09 30.59 0.12 -1.71 16 4 C -0.11 -2.22 1.86 -11.54 -0.02 -2.24 16 5 H 0.10 1.87 6.38 -2.39 -0.02 1.86 16 6 C -0.14 -2.23 8.59 71.98 0.62 -1.61 16 7 C 0.51 13.65 6.81 87.66 0.60 14.25 16 8 O -0.58 -19.53 15.74 -3.02 -0.05 -19.57 16 9 N -0.61 -15.35 2.76 -822.42 -2.27 -17.62 16 10 C 0.08 2.06 9.35 127.77 1.19 3.25 16 11 C 0.15 3.73 1.98 45.02 0.09 3.82 16 12 C -0.13 -3.47 5.25 30.67 0.16 -3.31 16 13 C 0.15 4.91 6.52 86.36 0.56 5.47 16 14 N -0.62 -26.62 2.79 -699.09 -1.95 -28.56 16 15 C -0.24 -13.31 10.09 84.03 0.85 -12.47 16 16 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 17 C -0.04 -2.37 5.36 84.86 0.45 -1.92 16 18 N -0.97 -60.27 13.97 21.65 0.30 -59.97 16 19 Si 0.95 44.60 24.30 68.60 1.67 46.27 16 20 H -0.28 -12.73 6.80 99.48 0.68 -12.05 16 21 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 22 H -0.24 -9.98 5.80 99.48 0.58 -9.40 16 23 C 0.12 4.63 4.11 86.36 0.35 4.98 16 24 C -0.14 -4.17 5.41 30.67 0.17 -4.00 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.08 0.94 6.67 -2.39 -0.02 0.92 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 32 H 0.06 1.03 7.56 -2.39 -0.02 1.01 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.09 6.80 -2.39 -0.02 1.08 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.82 6.68 -2.38 -0.02 1.80 16 37 H 0.06 1.68 7.42 -2.39 -0.02 1.66 16 38 H 0.11 2.43 5.01 -2.38 -0.01 2.41 16 39 H 0.06 1.65 7.54 -2.39 -0.02 1.63 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 43 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.05 1.72 6.62 -2.38 -0.02 1.71 16 45 H 0.05 2.01 4.30 -2.39 -0.01 2.00 16 46 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 47 H 0.06 1.88 6.94 -2.39 -0.02 1.87 16 Total: -1.00 -68.02 349.96 4.50 -63.52 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.76 Total: 14.38 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.04 Total: 1.56 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.92 Total: -106.15 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.27 kcal Total: -68.02 4.50 -63.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752297655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.861 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds