Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46869 * 2 1 4 4 C 1.52998 * 109.47435 * 186.76078 * 3 2 1 5 5 H 1.09000 * 109.46927 * 53.59501 * 4 3 2 6 6 C 1.50696 * 109.47350 * 173.59666 * 4 3 2 7 7 O 1.21280 * 119.99993 * 15.04967 * 6 4 3 8 8 N 1.34776 * 119.99775 * 195.05339 * 6 4 3 9 9 C 1.47430 * 125.65044 * 354.59999 * 8 6 4 10 10 C 1.54915 * 104.83038 * 204.09561 * 9 8 6 11 11 C 1.55159 * 101.58063 * 322.98841 * 10 9 8 12 12 H 1.08999 * 110.87389 * 277.06768 * 11 10 9 13 13 N 1.46496 * 110.71679 * 153.86847 * 11 10 9 14 14 C 1.36935 * 120.00104 * 91.47904 * 13 11 10 15 15 H 1.07999 * 120.00072 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99927 * 180.02562 * 14 13 11 17 17 N 1.31626 * 119.99995 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00109 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47379 * 270.00408 * 18 16 14 20 20 H 1.48494 * 109.46960 * 30.00642 * 18 16 14 21 21 H 1.48507 * 109.46786 * 150.00256 * 18 16 14 22 22 C 1.47024 * 125.64773 * 174.56384 * 8 6 4 23 23 C 1.53004 * 109.47248 * 293.59970 * 4 3 2 24 24 C 1.53002 * 109.46819 * 327.43205 * 23 4 3 25 25 C 1.52995 * 109.47272 * 87.42983 * 23 4 3 26 26 H 1.09000 * 109.47542 * 59.99992 * 1 2 3 27 27 H 1.09002 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47291 * 299.99473 * 1 2 3 29 29 H 1.09003 * 109.47291 * 240.00527 * 2 1 3 30 30 H 1.09000 * 109.47542 * 120.00008 * 2 1 3 31 31 H 1.09009 * 109.46927 * 66.76372 * 3 2 1 32 32 H 1.08998 * 109.47787 * 306.76679 * 3 2 1 33 33 H 1.09001 * 110.36572 * 322.93069 * 9 8 6 34 34 H 1.08997 * 110.36599 * 85.25653 * 9 8 6 35 35 H 1.09005 * 111.00037 * 204.91801 * 10 9 8 36 36 H 1.08993 * 111.00398 * 81.06713 * 10 9 8 37 37 H 0.97000 * 120.00062 * 271.47734 * 13 11 10 38 38 H 0.96995 * 120.00204 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.88510 * 59.55007 * 22 8 6 40 40 H 1.09005 * 109.88316 * 298.38774 * 22 8 6 41 41 H 1.09000 * 109.46917 * 207.43161 * 23 4 3 42 42 H 1.08997 * 109.47354 * 66.18453 * 24 23 4 43 43 H 1.08999 * 109.46936 * 186.18267 * 24 23 4 44 44 H 1.08997 * 109.47027 * 306.18002 * 24 23 4 45 45 H 1.09007 * 109.47254 * 62.48156 * 25 23 4 46 46 H 1.08998 * 109.47113 * 182.48341 * 25 23 4 47 47 H 1.08999 * 109.47645 * 302.48196 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5605 1.4460 -0.1698 5 1 3.8284 0.8699 -1.0554 6 6 4.0451 2.8642 -0.3275 7 8 3.3164 3.7897 -0.0388 8 7 5.2883 3.1040 -0.7895 9 6 6.3127 2.0816 -1.0704 10 6 7.6630 2.8330 -0.9615 11 6 7.3009 4.2140 -1.5689 12 1 7.3533 4.1854 -2.6573 13 7 8.1779 5.2601 -1.0372 14 6 9.3371 5.5802 -1.6922 15 1 9.6050 5.0612 -2.6006 16 6 10.1683 6.5710 -1.1880 17 7 11.2823 6.8790 -1.8179 18 14 9.7053 7.4682 0.3837 19 1 8.8937 8.6659 0.0493 20 1 8.9153 6.5627 1.2561 21 1 10.9391 7.8890 1.0951 22 6 5.8472 4.4285 -1.0975 23 6 4.2129 0.8183 1.0636 24 6 3.3681 1.1286 2.3009 25 6 4.3051 -0.6973 0.8761 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7787 1.9202 0.9444 32 1 1.5812 1.9902 -0.8232 33 1 6.2629 1.2818 -0.3315 34 1 6.1820 1.6798 -2.0751 35 1 8.4346 2.3372 -1.5507 36 1 7.9719 2.9326 0.0790 37 1 7.9375 5.7260 -0.2211 38 1 11.8629 7.5716 -1.4658 39 1 5.8354 5.0528 -0.2042 40 1 5.2665 4.9008 -1.8900 41 1 5.2137 1.2298 1.1944 42 1 2.4049 0.6249 2.2190 43 1 3.8871 0.7771 3.1927 44 1 3.2105 2.2047 2.3727 45 1 4.9430 -0.9195 0.0205 46 1 4.7294 -1.1492 1.7727 47 1 3.3087 -1.1032 0.7014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752593878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -35.735847 kcal Electronic energy + Delta-G solvation = -23358.774031 eV Core-core repulsion = 20155.390293 eV Total energy + Delta-G solvation = -3203.383738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.44913 -38.14284 -36.87428 -34.31427 -33.44552 -31.64186 -30.03195 -29.56398 -28.17415 -27.41899 -25.41203 -23.40443 -22.66162 -21.43168 -20.45636 -20.02263 -18.81666 -17.78566 -16.87403 -16.43973 -16.14617 -15.22287 -14.75991 -14.35538 -14.20069 -14.06602 -13.62343 -13.51006 -13.20822 -13.10865 -12.71340 -12.67194 -12.51470 -12.27453 -12.02612 -11.92046 -11.80123 -11.71925 -11.47605 -11.26320 -11.12723 -11.06413 -10.91206 -10.76044 -10.65647 -10.50952 -10.20260 -10.11933 -9.66815 -9.53058 -9.01215 -8.45491 -7.37268 -5.84182 -3.21586 2.73692 3.10260 3.34950 3.38622 3.43075 4.39962 4.48283 4.53576 4.58689 4.80748 4.86403 4.93030 4.94757 4.97811 5.15499 5.19224 5.30803 5.34185 5.40852 5.45042 5.45848 5.51753 5.59650 5.61280 5.64768 5.70084 5.72304 5.76657 5.84051 5.87014 5.87666 5.94153 6.01561 6.08022 6.13833 6.22771 6.26560 6.29726 6.48643 6.50527 6.76326 7.68980 7.89896 8.30046 8.34369 9.11021 9.83664 10.01951 11.33538 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.003571 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.681003 B = 7838.535590 C = 7947.191781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.098 4.098 5 H 0.092 0.908 6 C 0.529 3.471 7 O -0.546 6.546 8 N -0.614 5.614 9 C 0.095 3.905 10 C -0.154 4.154 11 C 0.177 3.823 12 H 0.076 0.924 13 N -0.739 5.739 14 C -0.249 4.249 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.930 5.930 18 Si 0.883 3.117 19 H -0.282 1.282 20 H -0.277 1.277 21 H -0.290 1.290 22 C 0.096 3.904 23 C -0.088 4.088 24 C -0.153 4.153 25 C -0.160 4.160 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 -17.645 4.567 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C -0.142 4.142 4 C -0.120 4.120 5 H 0.110 0.890 6 C 0.318 3.682 7 O -0.423 6.423 8 N -0.348 5.348 9 C -0.028 4.028 10 C -0.195 4.195 11 C 0.066 3.934 12 H 0.094 0.906 13 N -0.381 5.381 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.577 5.577 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.203 1.203 21 H -0.216 1.216 22 C -0.027 4.027 23 C -0.106 4.106 24 C -0.210 4.210 25 C -0.217 4.217 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.991 -17.103 4.571 25.240 hybrid contribution 0.004 0.740 1.047 1.282 sum -17.987 -16.363 5.618 24.957 Atomic orbital electron populations 1.21786 0.95966 1.01352 1.01955 1.21895 0.95765 0.96956 1.02320 1.21556 0.92325 0.96589 1.03731 1.21434 0.97396 0.93060 1.00077 0.88971 1.20343 0.80050 0.91368 0.76476 1.90678 1.55100 1.46351 1.50185 1.48498 1.12547 1.08995 1.64738 1.22493 0.88310 0.91493 1.00529 1.23527 0.94652 0.98546 1.02796 1.21159 0.86803 0.88009 0.97458 0.90648 1.42722 1.23902 1.42507 1.28985 1.19043 0.95664 1.16357 1.06833 0.88972 1.24668 0.96672 0.98918 0.98503 1.69696 1.13190 1.34287 1.40564 0.86579 0.77522 0.80269 0.84333 1.20897 1.20298 1.21610 1.22336 0.95535 0.84230 1.00604 1.21093 0.99634 0.96106 0.93814 1.22038 1.00095 1.02223 0.96675 1.22209 1.02906 0.94719 1.01873 0.92771 0.92904 0.92743 0.92009 0.90655 0.90305 0.91677 0.90872 0.91547 0.90072 0.90828 0.80333 0.92914 0.91591 0.91484 0.90638 0.91658 0.92842 0.92181 0.92496 0.92478 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.99 4.25 -26.73 -0.11 -1.10 16 3 C -0.10 -1.05 3.48 -26.73 -0.09 -1.14 16 4 C -0.10 -1.05 1.52 -91.77 -0.14 -1.19 16 5 H 0.09 0.86 7.67 -51.93 -0.40 0.46 16 6 C 0.53 7.88 6.90 -10.99 -0.08 7.80 16 7 O -0.55 -10.11 16.43 5.56 0.09 -10.02 16 8 N -0.61 -9.09 3.33 -170.52 -0.57 -9.65 16 9 C 0.09 1.17 6.37 -2.52 -0.02 1.15 16 10 C -0.15 -2.37 6.77 -24.58 -0.17 -2.54 16 11 C 0.18 3.23 3.61 -66.10 -0.24 3.00 16 12 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 13 N -0.74 -16.95 5.03 -51.65 -0.26 -17.21 16 14 C -0.25 -6.80 10.44 -15.06 -0.16 -6.95 16 15 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 17 N -0.93 -28.68 13.97 55.49 0.78 -27.91 16 18 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 22 C 0.10 1.65 6.62 -3.06 -0.02 1.63 16 23 C -0.09 -0.82 2.06 -90.62 -0.19 -1.01 16 24 C -0.15 -1.45 7.75 37.16 0.29 -1.16 16 25 C -0.16 -1.15 8.80 37.16 0.33 -0.82 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.08 0.51 4.15 -51.93 -0.22 0.30 16 31 H 0.08 0.87 5.92 -51.92 -0.31 0.56 16 32 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.07 0.76 5.73 -51.93 -0.30 0.46 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.36 8.37 5.42 -40.82 -0.22 8.15 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.07 1.22 7.72 -51.93 -0.40 0.82 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.08 0.81 6.15 -51.93 -0.32 0.49 16 42 H 0.06 0.53 5.15 -51.93 -0.27 0.27 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.46 4.50 -51.93 -0.23 0.22 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -31.71 353.47 -7.81 -39.53 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.14 Total: 5.62 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.32 Total: -2.89 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.05 Total: -54.78 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.71 -7.81 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752593878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.792 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds