Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 C 1.53000 * 109.47073 * 174.24740 * 3 2 1 5 5 H 1.08998 * 109.47207 * 323.13749 * 4 3 2 6 6 C 1.50700 * 109.47014 * 203.13849 * 4 3 2 7 7 O 1.21280 * 120.00037 * 343.53474 * 6 4 3 8 8 N 1.34772 * 120.00172 * 163.53706 * 6 4 3 9 9 C 1.47024 * 125.64705 * 354.19363 * 8 6 4 10 10 C 1.54322 * 107.27350 * 178.96673 * 9 8 6 11 11 C 1.55165 * 102.93860 * 337.80002 * 10 9 8 12 12 H 1.08998 * 111.00294 * 277.39431 * 11 10 9 13 13 N 1.46494 * 111.00161 * 153.57949 * 11 10 9 14 14 C 1.36946 * 120.00113 * 86.73171 * 13 11 10 15 15 H 1.07998 * 119.99760 * 359.72435 * 14 13 11 16 16 C 1.38807 * 120.00039 * 179.72548 * 14 13 11 17 17 N 1.31620 * 120.00017 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46980 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47558 * 119.99499 * 18 16 14 21 21 H 1.48507 * 109.46817 * 239.99882 * 18 16 14 22 22 C 1.47421 * 125.65287 * 174.21477 * 8 6 4 23 23 C 1.52999 * 109.46968 * 83.14023 * 4 3 2 24 24 C 1.53002 * 109.47393 * 298.56030 * 23 4 3 25 25 C 1.53003 * 109.47357 * 58.56338 * 23 4 3 26 26 H 1.09006 * 109.47397 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47490 * 300.00312 * 1 2 3 28 28 H 1.09009 * 109.46884 * 60.00320 * 1 2 3 29 29 H 1.09002 * 109.47074 * 239.99379 * 2 1 3 30 30 H 1.08997 * 109.46614 * 120.00302 * 2 1 3 31 31 H 1.09001 * 109.46826 * 54.24679 * 3 2 1 32 32 H 1.09004 * 109.46703 * 294.24508 * 3 2 1 33 33 H 1.08996 * 109.88442 * 59.53910 * 9 8 6 34 34 H 1.09007 * 110.00562 * 298.45101 * 9 8 6 35 35 H 1.08998 * 110.71784 * 219.44213 * 10 9 8 36 36 H 1.08990 * 110.88000 * 96.23509 * 10 9 8 37 37 H 0.97002 * 120.00459 * 266.45085 * 13 11 10 38 38 H 0.97001 * 119.99620 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.36702 * 85.26432 * 22 8 6 40 40 H 1.09003 * 110.36373 * 322.94758 * 22 8 6 41 41 H 1.08998 * 109.47103 * 178.56430 * 23 4 3 42 42 H 1.09008 * 109.46352 * 74.18105 * 24 23 4 43 43 H 1.09001 * 109.47255 * 194.17896 * 24 23 4 44 44 H 1.08994 * 109.47003 * 314.18740 * 24 23 4 45 45 H 1.08999 * 109.46704 * 54.36268 * 25 23 4 46 46 H 1.09005 * 109.47094 * 174.35556 * 25 23 4 47 47 H 1.08992 * 109.47167 * 294.35991 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5632 1.4448 0.1446 5 1 3.8653 0.6442 0.8198 6 6 4.0126 2.7700 0.7039 7 8 3.2622 3.7225 0.6839 8 7 5.2485 2.8967 1.2263 9 6 6.2115 1.8035 1.4237 10 6 7.4920 2.4232 2.0218 11 6 7.3858 3.9132 1.6018 12 1 7.7434 4.0581 0.5824 13 7 8.1116 4.7755 2.5376 14 6 9.4487 5.0096 2.3567 15 1 9.9691 4.5550 1.5267 16 6 10.1352 5.8312 3.2401 17 7 9.5009 6.3857 4.2514 18 14 11.9589 6.1512 2.9930 19 1 12.4320 5.4170 1.7919 20 1 12.1852 7.6067 2.8048 21 1 12.7096 5.6837 4.1860 22 6 5.8585 4.1543 1.6949 23 6 4.2059 1.2255 -1.2264 24 6 3.7781 -0.1358 -1.7785 25 6 3.7534 2.3294 -2.1843 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.5950 1.9851 0.8340 32 1 1.7632 1.9256 -0.9371 33 1 6.4392 1.3328 0.4673 34 1 5.8010 1.0645 2.1119 35 1 8.3810 1.9633 1.5902 36 1 7.4990 2.3282 3.1076 37 1 7.6443 5.1839 3.2831 38 1 9.9806 6.9602 4.8685 39 1 5.5683 4.3555 2.7262 40 1 5.5651 4.9820 1.0491 41 1 5.2910 1.2526 -1.1275 42 1 2.7420 -0.0827 -2.1131 43 1 4.4180 -0.4044 -2.6190 44 1 3.8692 -0.8898 -0.9968 45 1 3.9688 3.3031 -1.7442 46 1 4.2875 2.2318 -3.1295 47 1 2.6817 2.2399 -2.3616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752593879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -42.154474 kcal Electronic energy + Delta-G solvation = -23247.110905 eV Core-core repulsion = 20043.448835 eV Total energy + Delta-G solvation = -3203.662070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35224 -37.97552 -36.66699 -34.16794 -33.57673 -31.52475 -29.72049 -29.45392 -27.76308 -27.47178 -25.24003 -23.55319 -22.77906 -21.40710 -20.30866 -20.04918 -18.58087 -17.32716 -16.77973 -16.58820 -15.78319 -15.36079 -14.59960 -14.41450 -14.16858 -13.75939 -13.55943 -13.38335 -13.19603 -13.03475 -12.81755 -12.69142 -12.42962 -12.08203 -12.03570 -11.93008 -11.81561 -11.55280 -11.25061 -11.17899 -11.05589 -10.90191 -10.86258 -10.70159 -10.57986 -10.29795 -10.18071 -10.04142 -9.78898 -9.47519 -8.98050 -8.36695 -7.06219 -5.83928 -3.14570 2.80383 3.18646 3.39494 3.45335 3.47522 4.48222 4.51306 4.53700 4.62085 4.85554 4.95279 5.01859 5.04579 5.06455 5.24847 5.30922 5.35214 5.40638 5.48638 5.50535 5.57399 5.59126 5.60644 5.71034 5.71884 5.75416 5.80889 5.82820 5.90560 5.96959 5.98953 6.10331 6.12810 6.15661 6.22454 6.25254 6.38163 6.38674 6.56785 6.62207 6.90662 7.64250 7.78195 8.33221 8.37671 9.45153 9.99401 10.34247 11.38369 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.003299 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.664865 B = 8486.461969 C = 8726.913220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C -0.105 4.105 4 C -0.099 4.099 5 H 0.090 0.910 6 C 0.531 3.469 7 O -0.545 6.545 8 N -0.613 5.613 9 C 0.101 3.899 10 C -0.155 4.155 11 C 0.172 3.828 12 H 0.062 0.938 13 N -0.715 5.715 14 C -0.243 4.243 15 H 0.073 0.927 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.099 3.901 23 C -0.085 4.085 24 C -0.149 4.149 25 C -0.152 4.152 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 -15.566 -10.634 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C -0.143 4.143 4 C -0.121 4.121 5 H 0.108 0.892 6 C 0.320 3.680 7 O -0.423 6.423 8 N -0.347 5.347 9 C -0.022 4.022 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.080 0.920 13 N -0.356 5.356 14 C -0.374 4.374 15 H 0.091 0.909 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.024 4.024 23 C -0.103 4.103 24 C -0.206 4.206 25 C -0.209 4.209 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.833 -15.021 -10.718 23.063 hybrid contribution 1.005 0.278 0.370 1.107 sum -12.828 -14.743 -10.348 22.114 Atomic orbital electron populations 1.21766 0.96074 1.01252 1.01860 1.22026 0.95869 0.97037 1.02850 1.21560 0.92391 0.96669 1.03695 1.21445 0.97602 0.95266 0.97741 0.89208 1.20267 0.80025 0.90524 0.77221 1.90680 1.52647 1.41253 1.57694 1.48476 1.14217 1.10508 1.61504 1.22116 0.90247 0.89812 1.00037 1.23407 0.94775 0.99832 1.01613 1.21289 0.88667 0.89301 0.94719 0.91989 1.42274 1.07402 1.55491 1.30421 1.19249 0.85004 1.23951 1.09213 0.90941 1.24777 0.98313 0.99964 0.97663 1.69676 1.35350 1.35961 1.16758 0.86101 0.85004 0.77668 0.77278 1.20486 1.21780 1.21801 1.22506 0.94113 0.85983 0.99768 1.21040 1.00263 0.95984 0.93047 1.22124 1.01638 0.96023 1.00847 1.21961 1.01425 0.98681 0.98856 0.92983 0.92843 0.92832 0.90273 0.92271 0.91207 0.90736 0.91872 0.92170 0.90778 0.90558 0.77940 0.93397 0.91474 0.90778 0.90591 0.91541 0.92653 0.92290 0.92184 0.92638 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.14 -1.14 5.27 -26.73 -0.14 -1.28 16 3 C -0.11 -1.11 4.00 -26.73 -0.11 -1.22 16 4 C -0.10 -1.10 1.52 -91.77 -0.14 -1.24 16 5 H 0.09 0.89 7.35 -51.93 -0.38 0.51 16 6 C 0.53 8.13 5.80 -10.99 -0.06 8.06 16 7 O -0.55 -10.25 15.87 5.56 0.09 -10.17 16 8 N -0.61 -9.46 3.33 -170.52 -0.57 -10.03 16 9 C 0.10 1.33 6.16 -3.06 -0.02 1.31 16 10 C -0.16 -2.50 6.65 -24.89 -0.17 -2.66 16 11 C 0.17 3.31 3.69 -65.78 -0.24 3.07 16 12 H 0.06 1.22 8.13 -51.93 -0.42 0.79 16 13 N -0.72 -17.40 5.28 -51.35 -0.27 -17.68 16 14 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 18 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C 0.10 1.79 6.51 -2.53 -0.02 1.77 16 23 C -0.08 -0.82 2.70 -90.62 -0.25 -1.06 16 24 C -0.15 -1.10 7.52 37.16 0.28 -0.82 16 25 C -0.15 -1.61 8.57 37.16 0.32 -1.29 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.08 0.56 4.24 -51.93 -0.22 0.34 16 30 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 31 H 0.07 0.88 7.53 -51.93 -0.39 0.48 16 32 H 0.07 0.80 5.62 -51.93 -0.29 0.51 16 33 H 0.06 0.71 6.54 -51.93 -0.34 0.37 16 34 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.39 10.07 7.71 -40.82 -0.31 9.75 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 40 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.08 0.77 6.48 -51.93 -0.34 0.43 16 42 H 0.07 0.46 5.86 -51.92 -0.30 0.16 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.39 7.62 -51.93 -0.40 0.00 16 45 H 0.06 0.80 6.87 -51.93 -0.36 0.44 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.60 6.18 -51.93 -0.32 0.28 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -30.54 357.66 -8.33 -38.87 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.25 Total: 6.84 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.42 Total: -3.24 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.11 Total: -54.59 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.54 -8.33 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752593879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.281 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds